Spo08283.1 (mRNA) | SpinachBase

Overview


Name	Spo08283.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RNA-binding CRS1 / YhbY (CRM) domain protein
Location	SpoScf_00895 : 51623 .. 57584 (-)
Sequence length	1980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTACCAGAATTATGATGCAGGCAATGTGTAGAAGAACTAAGTGTACTATCTTCAATTCATTCCATTTCCAATCCATTCCACGGTTGGTTTTTTCTGTTTTAATTTCCCCCACATTTTAATTTACTTTCCTTAGCTTATTAGGGTTAATTCATCTTTACGCTTTCAAATTCTAGTAATATTCTCTACAATTAGCTGCTATTTTCACTGATTTTCATGAAATTGAGATACAACTTTATTGATTTTTAATGCAGGATTTCTTACGATGTGAACAATTTATCTCAATATTCATCAAATTTTCATACTTTTCTGCAATACCCATCAAAGAACGTATATTATTATAAGCCATTGGAATCTAGTATCTTCTGGGTTTCCGAGGGTGTTACCAGATGGTTGAGTGTTAGGCACTTGAGCAATGCATCTGTTGGGGTAAAAGATGATAATGGTGTTGTTAGGTTTTCTTTCGGTGAAAAGGGTGATACAAGAGTTTCCCCTGGAGAAGGAAAAAGGATAATGGTGAAAAAGAAGAAGTCAAAAAAGGCCAAGGTGAATGAATTGAGGTTTTACCGCCTTATGGCGAAGAAGAAGATGAATTCTTCGAATCCTGAAGTTAGGATTAGATATAAACTGGAAAAGGTAGCATAATTGTTAAGAGTTTTTGATGCTTTTGTCTAATTTGTGATTCAGTTGTTTGTTTGAAATTAATCATTTACAGTCTAGGATGGGCTAAATCAATCTTTCATTTTCGATTTTTCGTACATTTAAGGTCATACTAAGTATCTCAGTTCTGTTATCCTTTGCATTATTGACAAGATTAGCAAAAGACGATGTTAGTTCGAAATGGATAATAACTTTTCCCTTTCAAATTGAAGGGTCACTTTTGACTTCCACTGTCAAATCTTGTCAACTTTGATATTAGTTTCCATGGTTATACACTTATATACTAATAGTTACAGAACTCATAGTAACAACACTATTTGGCTAGTTAATTGGGACGGAGGTTGTAATTAAACTTTGATGCCGTAATGCTTTGAGAACATGTTTGTTATAAACTTAGGAAATGAAATGGAAAGGAAACAAATAAGAAGGGGAAAGGATATTACCATTATTAGTTGTTTGGTATACCTTAGAAAATGAATCACTTGTAACAAATTGGGGGATTGAGGAGGGTAACCATTTTGTTACTATAGGGTTGGGAGAGGTAACAAATGGTGGTAATGGTTAGCCTTAGGAAATGGATTGTATTACCACTTCTCTCATACCACACATTAGGTAATGGAAATAGTTAATTGATTCCATTTCCAACACTTAAAAACTCTATACCAAACATGCTCCGAATGTTTTCAGTTTTGTCTGCATATAGTGTATTGCACAATATGCTAATGCACATCTGTTCTCTTCTTAGGCAAAGCGAAAGGAAGCTTGGCTGATTGAGAAACTGAGAAAATTTGTGTTACCTAAGGCTCCAGCTGAAACATATGATCCTGAAAGTTTAACTGAGGAAGAGAAATTTTATCTGAAACGCACTGGTGAGAAGAAAAAGAATTATGTTCCTGTTGGGAGACGTGGAGTCTTTGGAGGAGTTGTGCTCAATATGCATCTGCATTGGAAAAAGCATGAAACAGTCAAGGTTGTTTGCAAACCTTGTAAGCCTGGGCAGGTTCATGAAATTGCGGAAGAGATTACCAGGCTCAGCAAAGGTATTGCTATTGATATAAAGCCTGACAACACTATAATATTTTACCGTGGGAAGAATTATGTGCAACCAGAAGTAATGTCTCCTCCTGATACACTGTCAAAGGCAAAGGTATAATAGATAACGGGTGTTTGGCATGGTCCCTTGTTTATGATGGAAGTTGTTGCAGTTTCTGTTCTATCATACTTCCTCCATTCTTATTTACATGACACAATTTGGTTTTGGACATTGTTCAAAGAGCTACTTTGACTTCCTTTTGTGATTTATACTTAAGAAAAAACATAGTCGTGTGAAATCTTGGTAGAGTCGTCTCAATAAATATTTTTTAAATATCAACTTTTATATTTTTTTCTTATTCATTGAAGATATTAATGTTTGAAATCGTGCATTCGCAAACGTGATTAAATTAGTGTGTCATTTAAATAAGAACAAAGGAAGTGTTATTTAATCTGTTCCTTTTCTATTTAGGCCTTAGAGAAGTATCAGCATGAACAGTCTCTTGAGCATACAAGTCAATTCATCGAAAAGTTGGAGAAGGAGCTCGAAGAGTATCATGAGCATGTAGATCGGTATGGGAGAGGGAAAAATAATGCACCAAAAGATTCTACTGCACTTGATTAATGGTAATTTTTATTTTGTATGTGATTATAGTCTTTTACCTTGACTGACACTGTTATTACCTGTTTGCTTACTGTATCTTGGTTGTGAGGAGATTTAACTAGAAATTACTTTTCAACTCTATAGTCTGTACAAACTATGTCTTTTGATACTTGAGACTTGAGAGGCATAAAGGGTGTATGAGAAAAAAAAGCAACAGTTAGAAGAAATTGGATCATTTCACATTTCATATTTGGTTACTTGGGAGGCAAGATAGGTTGCTAAACTTAATTCTTCTGAATGGTACTAGCACATAAAATTGAAAGTTACTGGGTGCTCTCCAATCTTACTGAAGACCTTAGTTTGGTCTCATATATTGTCGTTTCGGATCTGAACTTCTACAACTTTTTTGGTGATGTCATATGGGATGCTGGTGTTCTCCCTACTAGTCTATAATGTACTCCTGGTTACTGGAAAGACTGAACGGATTTGGGAAAACTGAAACCTCGTAGCTTGAACGTATTAGCGTATAACAATTGTTTGTTACTCATGCTCTCCAACCAGTCTTTTAGGTGTAGAACTTGGAATTTGTCAGATACGGAGTAGTCGTTATGGTTCCAAATCAGTAGAGATACTTTAATTAGTCTGGCATGTTGAGTTCTGATTTATGGGTTCCTAGTGGCAGAATTTGTTGGGGGAATCCTTCATGTTTAACCTGGGCTCCCTGGTTCTATAATTGAACTTTGATAATTGTTTCCAGTTTTACTTTTTTGATCACGGCATTTTTATGTTGATTCTTGGGTCTAAAATGTTACTGAAGGTTGAGCTCTTGTAGGTTGACCTGTCTGTTGTAAACTTGTAAAAGGTGAAACTGTGCTATGAACTAAGACAATTCTTAGCTAATCTCTCTTGAACTAGATCAGTAGAACATAATGAAGAATCGATGAAGAATTTAATGGAAAATTACTAAGATATGATTGTATTGATGACAAACACAGATTACAACCTACCGAACATTCGTGAGCTTTGCCTTCTCCCGAGTAACAATTTTTATCTTTAACATGATAATCCCTTCCTAATGTTCTCCTATTTATGTATTGCTAATCTAACTCACTTATTTTTCTCTTCAAGATATTATTAACTGAATTATATTGTACTACCTAATATTCCCCTCCCCCTGTTTGCCAGTTGATTCAGCAAACTGCTCAGCTTAACATAAAAGGCCTAATCTTGTTTATAAATCTGGAAATGAACTGAGATAGACGTAAGAGCTTTTTTTAAGATGATGTAGATAATACACTACATATTCCTCAATGACATGCCCAGTGCTATTAGTCTCACTTATCCTAAGAGGTACTGTTAGGTCATTTCTTAGGCATATCCTTCACATGAAAATGGTAAACTATTTGTGCCTATTACGTTAAATGGAATCTTCTTTTGAGTTCCTGAATTTATTGGTCCATTGTATCTACGAAATATATGTTTTACCAATTACTTCTTTACTTTACAATGTCAAAGTCAGACCTATTACAGAAAGAAGAAGTTACAGAGTGGCATTACTGAAATGCAAGAATGAGAAATAGATAGTGTTATATGCTAGACAGCTCGATCAATAAAAGTTAGGGTGAGCCTTCCCCACGAAGGTTCAGTTTTTCCCTCAATCTATATTTGAAGCTGTTTTTTTTATTCCATTTTAGTTCCAATATGTTTTGTACTCCCTCTGTCCCTTAATACTCGCACCGTTTTGACTTTTTACACTATTCACATAATTCACTTTGACCCTATTTTATTTCTAGTATATGAAAACAAATGTTACTATATAATATATTGTTGACTTCATCTTAATATATATTTTCAAAATATTAATATTTTTATAAATTTTTATAATATGTAGTTAAAGATATTGGTGGTCAAAGATGTGCATTGGCAAGCGTGTCCAGTCGAAACGGTGCGAGTATTAAGGGACGGAGGGAGTACAATTTATCTGCAATAGGTAGTGACTGATATTATCTAGAAGACAAATTAGGTAGATGTAGTAGAATGGTTATAAATACTGGCACATTAGGTTATGGGAGGTAGGTTGAGTATTTGGTAAAGCTTAGGCTTTATACTTGGAGATTGGAGGCCTCAAGTCACTACCTTTTGTATCCCATTTTGTGTTCATCATCTTTCAAACAAATTAATATATTTTCTTTACATTGTGCAGGAGTATAAGTCTTGATATGAAAATCTAGTAACTGGATAATATAAAGAAATTGGTTGTTTTTGGGTTTAACCTTTTGGTATATTATGTGGTGAAAACTCTTGTTTAACATGGTTGAAACTGCGGTGCATCAATTCAGCGCTGCAGCTAGAAGATGCTCTGATGTATGCAAAACCTGTCGAAATGCCAAGCATACCCTTACTTCTCTTCGCTAAATCTCTCCTCCCCAAAACACTGACAAAAACAAAACAAAAAAAGTAAAAAAAAGAGGAAAAGGTAAGTTATGTCTCTGAATTCTCCATGTTCTTGCTAGCAGTAGAAGAGAATCATACTGATTTTTTTCTGAACCTTTTGGTTCATTTGGTACCAAGGTTGCAGGTTAAGGGAATCATACTGAGTTTCTGCGTGGTTTGTGTTGTATCTCTTGCTACCAAGCATGTTTCTATTTGTTTTAATTTTTTTACTGTTTTTTTAATTTCAACTGATACTCACATCTGTTGGTTGTAATAGGCGAATAAGGTGATAATGTAAAGGAGTTCATAAAAACATTTGCTTGCGAGTGGAGAATCTGAAGATGCAACAACTGCATTCACCAGTATATATTTCCACAACTAGTCATCTGCTTAAAGACATTGTATCATTTATCAAATGAGAGATTTGTGTTGGGTGGAGGGAGGAAATTGATCGTTCGAGAGACCAGTGTAAGGCTGAAGATGCATCTACAGGTTCACACCAAAAAAAACAGACAGGAACATGTAACGAACTTTTGGTGCAAGATATGGGCCCCATTTTGAACTTTTTGGCCCGGACCAGCACGATGCAGGGTGGGCTTGGTGCGGCCCGTGGGCTCGACCCGAAGCCATGTTTATACAGGTGGAACCAAGTTAACGTGGAAATGCATTCAGTGCCTATACAATTGGGAAAAACCGAAAATGGATTTATCATTGCGTTAGGCTAGATTATGTGATCGGGTACAAGTACAACTCATGTTAAGCGAATAGTATGTTGAAGAGCTTTCCTGGGTTCTACATTGATGATATCGCTAGAGAGTTGGAGTCCTTAGTTATGCTCACAGAGGTCAAGTTAAGTTTTCACATTAGATTATGCTTTAGTATGATGCTGTTCTTGTAAAATTATACATTACAGAGTAACATACCATTAATGTAATTTATTATGACTATGAAACAGTAAATAGTTGGTTGTTTCACATGTGAAAAGGGGAGGATGCTTGAGTCTCAGACAATCTGAAATAGAATCAAGGCCTCAAGGAATTTATATCGAAGCTGATCTTCCAAATTTTGAAAGCAAATCTCCAAAAATATACTCCACAAGAATGACCGGCAGAGGTGAAATGAGCCGAACTGAGTACTATATATCTTGTTCATGTTTATTTAATCTAGGTGAGCTTGCGTCCGAACCCGAACTTTCAATCGAGCTCAAAAATTTGTTCAAGCTCGGTTCGCTT

mRNA sequence

ATGGTTACCAGAATTATGATGCAGGCAATGTGTAGAAGAACTAAGTGTACTATCTTCAATTCATTCCATTTCCAATCCATTCCACGGATTTCTTACGATGTGAACAATTTATCTCAATATTCATCAAATTTTCATACTTTTCTGCAATACCCATCAAAGAACGTATATTATTATAAGCCATTGGAATCTAGTATCTTCTGGGTTTCCGAGGGTGTTACCAGATGGTTGAGTGTTAGGCACTTGAGCAATGCATCTGTTGGGGTAAAAGATGATAATGGTGTTGTTAGGTTTTCTTTCGGTGAAAAGGGTGATACAAGAGTTTCCCCTGGAGAAGGAAAAAGGATAATGGTGAAAAAGAAGAAGTCAAAAAAGGCCAAGGTGAATGAATTGAGGTTTTACCGCCTTATGGCGAAGAAGAAGATGAATTCTTCGAATCCTGAAGTTAGGATTAGATATAAACTGGAAAAGGCAAAGCGAAAGGAAGCTTGGCTGATTGAGAAACTGAGAAAATTTGTGTTACCTAAGGCTCCAGCTGAAACATATGATCCTGAAAGTTTAACTGAGGAAGAGAAATTTTATCTGAAACGCACTGGTGAGAAGAAAAAGAATTATGTTCCTGTTGGGAGACGTGGAGTCTTTGGAGGAGTTGTGCTCAATATGCATCTGCATTGGAAAAAGCATGAAACAGTCAAGGTTGTTTGCAAACCTTGTAAGCCTGGGCAGGTTCATGAAATTGCGGAAGAGATTACCAGGCTCAGCAAAGGTATTGCTATTGATATAAAGCCTGACAACACTATAATATTTTACCGTGGGAAGAATTATGTGCAACCAGAAGTAATGTCTCCTCCTGATACACTGTCAAAGGCAAAGGCCTTAGAGAAGTATCAGCATGAACAGTCTCTTGAGCATACAAGTCAATTCATCGAAAAGTTGGAGAAGGAGCTCGAAGAGTATCATGAGCATGTAGATCGGTATGGGAGAGGGAAAAATAATGCACCAAAAGATTCTACTGCACTTGATTAATGGCGAATAAGGTGATAATGTAAAGGAGTTCATAAAAACATTTGCTTGCGAGTGGAGAATCTGAAGATGCAACAACTGCATTCACCAGTATATATTTCCACAACTAGTCATCTGCTTAAAGACATTGTATCATTTATCAAATGAGAGATTTGTGTTGGGTGGAGGGAGGAAATTGATCGTTCGAGAGACCAGTGTAAGGCTGAAGATGCATCTACAGGTTCACACCAAAAAAAACAGACAGGAACATGTAACGAACTTTTGGTGCAAGATATGGGCCCCATTTTGAACTTTTTGGCCCGGACCAGCACGATGCAGGGTGGGCTTGGTGCGGCCCGTGGGCTCGACCCGAAGCCATGTTTATACAGGTGGAACCAAGTTAACGTGGAAATGCATTCAGTGCCTATACAATTGGGAAAAACCGAAAATGGATTTATCATTGCGTTAGGCTAGATTATGTGATCGGGTACAAGTACAACTCATGTTAAGCGAATAGTATGTTGAAGAGCTTTCCTGGGTTCTACATTGATGATATCGCTAGAGAGTTGGAGTCCTTAGTTATGCTCACAGAGGTCAAGTTAAGTTTTCACATTAGATTATGCTTTAGTATGATGCTGTTCTTGTAAAATTATACATTACAGAGTAACATACCATTAATGTAATTTATTATGACTATGAAACAGTAAATAGTTGGTTGTTTCACATGTGAAAAGGGGAGGATGCTTGAGTCTCAGACAATCTGAAATAGAATCAAGGCCTCAAGGAATTTATATCGAAGCTGATCTTCCAAATTTTGAAAGCAAATCTCCAAAAATATACTCCACAAGAATGACCGGCAGAGGTGAAATGAGCCGAACTGAGTACTATATATCTTGTTCATGTTTATTTAATCTAGGTGAGCTTGCGTCCGAACCCGAACTTTCAATCGAGCTCAAAAATTTGTTCAAGCTCGGTTCGCTT

Coding sequence (CDS)

ATGGTTACCAGAATTATGATGCAGGCAATGTGTAGAAGAACTAAGTGTACTATCTTCAATTCATTCCATTTCCAATCCATTCCACGGATTTCTTACGATGTGAACAATTTATCTCAATATTCATCAAATTTTCATACTTTTCTGCAATACCCATCAAAGAACGTATATTATTATAAGCCATTGGAATCTAGTATCTTCTGGGTTTCCGAGGGTGTTACCAGATGGTTGAGTGTTAGGCACTTGAGCAATGCATCTGTTGGGGTAAAAGATGATAATGGTGTTGTTAGGTTTTCTTTCGGTGAAAAGGGTGATACAAGAGTTTCCCCTGGAGAAGGAAAAAGGATAATGGTGAAAAAGAAGAAGTCAAAAAAGGCCAAGGTGAATGAATTGAGGTTTTACCGCCTTATGGCGAAGAAGAAGATGAATTCTTCGAATCCTGAAGTTAGGATTAGATATAAACTGGAAAAGGCAAAGCGAAAGGAAGCTTGGCTGATTGAGAAACTGAGAAAATTTGTGTTACCTAAGGCTCCAGCTGAAACATATGATCCTGAAAGTTTAACTGAGGAAGAGAAATTTTATCTGAAACGCACTGGTGAGAAGAAAAAGAATTATGTTCCTGTTGGGAGACGTGGAGTCTTTGGAGGAGTTGTGCTCAATATGCATCTGCATTGGAAAAAGCATGAAACAGTCAAGGTTGTTTGCAAACCTTGTAAGCCTGGGCAGGTTCATGAAATTGCGGAAGAGATTACCAGGCTCAGCAAAGGTATTGCTATTGATATAAAGCCTGACAACACTATAATATTTTACCGTGGGAAGAATTATGTGCAACCAGAAGTAATGTCTCCTCCTGATACACTGTCAAAGGCAAAGGCCTTAGAGAAGTATCAGCATGAACAGTCTCTTGAGCATACAAGTCAATTCATCGAAAAGTTGGAGAAGGAGCTCGAAGAGTATCATGAGCATGTAGATCGGTATGGGAGAGGGAAAAATAATGCACCAAAAGATTCTACTGCACTTGATTAA

Protein sequence

MVTRIMMQAMCRRTKCTIFNSFHFQSIPRISYDVNNLSQYSSNFHTFLQYPSKNVYYYKPLESSIFWVSEGVTRWLSVRHLSNASVGVKDDNGVVRFSFGEKGDTRVSPGEGKRIMVKKKKSKKAKVNELRFYRLMAKKKMNSSNPEVRIRYKLEKAKRKEAWLIEKLRKFVLPKAPAETYDPESLTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQVHEIAEEITRLSKGIAIDIKPDNTIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQSLEHTSQFIEKLEKELEEYHEHVDRYGRGKNNAPKDSTALD

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo08283	Spo08283	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo08283.1	Spo08283.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08283.1.CDS.4	Spo08283.1.CDS.4	CDS
Spo08283.1.CDS.3	Spo08283.1.CDS.3	CDS
Spo08283.1.CDS.2	Spo08283.1.CDS.2	CDS
Spo08283.1.CDS.1	Spo08283.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08283.1.utr3p.2	Spo08283.1.utr3p.2	three_prime_UTR
Spo08283.1.utr3p.1	Spo08283.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08283.1.exon.5	Spo08283.1.exon.5	exon
Spo08283.1.exon.4	Spo08283.1.exon.4	exon
Spo08283.1.exon.3	Spo08283.1.exon.3	exon
Spo08283.1.exon.2	Spo08283.1.exon.2	exon
Spo08283.1.exon.1	Spo08283.1.exon.1	exon

Homology

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BLAST of Spo08283.1 vs. NCBI nr
Match: gi|902239677|gb|KNA25671.1| (hypothetical protein SOVF_004350 [Spinacia oleracea])

HSP 1 Score: 668.7 bits (1724), Expect = 5.400e-189
Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 1


		  
Query: 6   MMQAMCRRTKCTIFNSFHFQSIPRISYDVNNLSQYSSNFHTFLQYPSKNVYYYKPLESSI 65
           MMQAMCRRTKCTIFNSFHFQSIPRISYDVNNLSQYSSNFHTFLQYPSKNVYYYKPLESSI
Sbjct: 1   MMQAMCRRTKCTIFNSFHFQSIPRISYDVNNLSQYSSNFHTFLQYPSKNVYYYKPLESSI 60

Query: 66  FWVSEGVTRWLSVRHLSNASVGVKDDNGVVRFSFGEKGDTRVSPGEGKRIMVKKKKSKKA 125
           FWVSEGVTRWLSVRHLSNASVGVKDDNGVVRFSFGEKGDTRVSPGEGKRIMVKKKKSKKA
Sbjct: 61  FWVSEGVTRWLSVRHLSNASVGVKDDNGVVRFSFGEKGDTRVSPGEGKRIMVKKKKSKKA 120

Query: 126 KVNELRFYRLMAKKKMNSSNPEVRIRYKLEKAKRKEAWLIEKLRKFVLPKAPAETYDPES 185
           KVNELRFYRLMAKKKMNSSNPEVRIRYKLEKAKRKEAWLIEKLRKFVLPKAPAETYDPES
Sbjct: 121 KVNELRFYRLMAKKKMNSSNPEVRIRYKLEKAKRKEAWLIEKLRKFVLPKAPAETYDPES 180

Query: 186 LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQVHEI 245
           LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQVHEI
Sbjct: 181 LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQVHEI 240

Query: 246 AEEITRLSKGIAIDIKPDNTIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQSLEHTS 305
           AEEITRLSKGIAIDIKPDNTIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQSLEHTS
Sbjct: 241 AEEITRLSKGIAIDIKPDNTIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQSLEHTS 300

Query: 306 QFIEKLEKELEEYHEHVDRYGRGKNNAPKDSTALD 341
           QFIEKLEKELEEYHEHVDRYGRGKNNAPKDSTALD
Sbjct: 301 QFIEKLEKELEEYHEHVDRYGRGKNNAPKDSTALD 335

[Close]

BLAST of Spo08283.1 vs. NCBI nr
Match: gi|731339734|ref|XP_010681016.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 491.1 bits (1263), Expect = 1.500e-135
Identity = 257/341 (75.37%), Postives = 291/341 (85.34%), Query Frame = 1


		  
Query: 6   MMQAMCRRTKCTIFNSFHFQSIPRISYDVNNLSQYSSNFHTFLQYPSKNVYYYKPLESSI 65
           MMQA+ RRTKC + +S HF SI R S  VN LS+YS NFHT L+Y S N  +YKP +S+ 
Sbjct: 1   MMQALFRRTKCIVSHSSHFHSILRDSSPVNYLSRYSLNFHTCLEY-SLNSSFYKPWDSNR 60

Query: 66  FWVSEGV-TRWLSVRHLSNASVGVKDDNGVVRFSFGE----KGDTRVSPGEGK-RIMVKK 125
           + +S  V TRWL VRH+S++SVG+K DNGVVRF FG+    KG+  V   EG+ R+M KK
Sbjct: 61  YRISGDVATRWLCVRHMSSSSVGIKADNGVVRFCFGDSPDQKGNVGVVTDEGRGRMMKKK 120

Query: 126 KKSKKAKVNELRFYRLMAKKKMNSSNPEVRIRYKLEKAKRKEAWLIEKLRKFVLPKAPAE 185
           K S+K+K+NELRFYRL AKKKM SSNPEVRIRYKL KAKRKEAWLIEKLRK  LPK PAE
Sbjct: 121 KNSRKSKLNELRFYRLKAKKKMKSSNPEVRIRYKLGKAKRKEAWLIEKLRKLELPKPPAE 180

Query: 186 TYDPESLTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKP 245
           TYDPESLTEEE+FYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKP
Sbjct: 181 TYDPESLTEEERFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKP 240

Query: 246 GQVHEIAEEITRLSKGIAIDIKPDNTIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQ 305
           GQ+HEIAEE+ RLSKGI IDIKPDNT+IFYRGKNYV+PEVMSPPDTLSK KALEKY++EQ
Sbjct: 241 GQIHEIAEELARLSKGIVIDIKPDNTVIFYRGKNYVRPEVMSPPDTLSKTKALEKYKYEQ 300

Query: 306 SLEHTSQFIEKLEKELEEYHEHVDRYGRGKNNAPKDSTALD 341
           SLEHTS+FIEKLE++LEEYHEH+ R+ RGK+NA KDS ALD
Sbjct: 301 SLEHTSEFIEKLEEQLEEYHEHLTRFRRGKDNASKDSRALD 340

[Close]

BLAST of Spo08283.1 vs. NCBI nr
Match: gi|731339738|ref|XP_010681018.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 436.8 bits (1122), Expect = 3.500e-119
Identity = 220/274 (80.29%), Postives = 245/274 (89.42%), Query Frame = 1


		  
Query: 72  VTRWLSVRHLSNASVGVKDDNGVVRFSFGE----KGDTRVSPGEGK-RIMVKKKKSKKAK 131
           + RWL VRH+S++SVG+K DNGVVRF FG+    KG+  V   EG+ R+M KKK S+K+K
Sbjct: 22  ILRWLCVRHMSSSSVGIKADNGVVRFCFGDSPDQKGNVGVVTDEGRGRMMKKKKNSRKSK 81

Query: 132 VNELRFYRLMAKKKMNSSNPEVRIRYKLEKAKRKEAWLIEKLRKFVLPKAPAETYDPESL 191
           +NELRFYRL AKKKM SSNPEVRIRYKL KAKRKEAWLIEKLRK  LPK PAETYDPESL
Sbjct: 82  LNELRFYRLKAKKKMKSSNPEVRIRYKLGKAKRKEAWLIEKLRKLELPKPPAETYDPESL 141

Query: 192 TEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQVHEIA 251
           TEEE+FYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQ+HEIA
Sbjct: 142 TEEERFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQIHEIA 201

Query: 252 EEITRLSKGIAIDIKPDNTIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQSLEHTSQ 311
           EE+ RLSKGI IDIKPDNT+IFYRGKNYV+PEVMSPPDTLSK KALEKY++EQSLEHTS+
Sbjct: 202 EELARLSKGIVIDIKPDNTVIFYRGKNYVRPEVMSPPDTLSKTKALEKYKYEQSLEHTSE 261

Query: 312 FIEKLEKELEEYHEHVDRYGRGKNNAPKDSTALD 341
           FIEKLE++LEEYHEH+ R+ RGK+NA KDS ALD
Sbjct: 262 FIEKLEEQLEEYHEHLTRFRRGKDNASKDSRALD 295

[Close]

BLAST of Spo08283.1 vs. NCBI nr
Match: gi|590688605|ref|XP_007042997.1| (RNA-binding CRS1 / YhbY domain protein isoform 1 [Theobroma cacao])

HSP 1 Score: 393.3 bits (1009), Expect = 4.400e-106
Identity = 201/275 (73.09%), Postives = 229/275 (83.27%), Query Frame = 1


		  
Query: 61  LESSIFWVSEGVTRWLSVRHLSNASVGVKDDNGVVRFSFGEKGDTRVSPGEGKRIMVKKK 120
           LE +IFW    + +WL  R++SNASV +K D  V+RFSF  K   RV    GK    + K
Sbjct: 74  LEPNIFWHRNILCKWLCARNMSNASVELKTDEDVIRFSF-SKALGRVGSTYGKGTTKRHK 133

Query: 121 KSKKAKVNELRFYRLMAKKKMNSSNPEVRIRYKLEKAKRKEAWLIEKLRKFVLPKAPAET 180
            SK+AK+NELRFYRL AKKKMNS NPEVRIRYKLEKA+RKEAWL+EKL K+ +PKAPAET
Sbjct: 134 MSKRAKLNELRFYRLKAKKKMNSPNPEVRIRYKLEKAQRKEAWLVEKLIKYEVPKAPAET 193

Query: 181 YDPESLTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPG 240
           YDPE LTEEE+ YLKRTGEKKKNYV VGRRGVFGGVVLNMHLHWK HETVKV CKPCKPG
Sbjct: 194 YDPEILTEEERHYLKRTGEKKKNYVQVGRRGVFGGVVLNMHLHWKNHETVKVTCKPCKPG 253

Query: 241 QVHEIAEEITRLSKGIAIDIKPDNTIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQS 300
           QVHE A E+ RLSKGI IDIKP+NTIIFYRGKNYVQP++MSPPDTLSK+KALEKY++EQS
Sbjct: 254 QVHEYAGELARLSKGIVIDIKPNNTIIFYRGKNYVQPKIMSPPDTLSKSKALEKYKYEQS 313

Query: 301 LEHTSQFIEKLEKELEEYHEHVDRYGRGKNNAPKD 336
           L+HTS+FIEKLEKELEEY EH  RY + K +AP++
Sbjct: 314 LDHTSEFIEKLEKELEEYLEHKARYKKAKESAPQN 347

[Close]

BLAST of Spo08283.1 vs. NCBI nr
Match: gi|731405604|ref|XP_010655847.1| (PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Vitis vinifera])

HSP 1 Score: 393.3 bits (1009), Expect = 4.400e-106
Identity = 197/271 (72.69%), Postives = 228/271 (84.13%), Query Frame = 1


		  
Query: 63  SSIFWVSEGVTRWLSVRHLSNASVGVKDDNGVVRFSFGEKGDTRVSPGEGKRIMVKKKKS 122
           S++    + +++W   R++SN S+ +K D+ VVRF+ GE      +  +GK+ M + K S
Sbjct: 65  SNMVGCGDALSKWARARYMSNTSIELKPDSDVVRFNIGELPGKTGTSKKGKKKMRRVKMS 124

Query: 123 KKAKVNELRFYRLMAKKKMNSSNPEVRIRYKLEKAKRKEAWLIEKLRKFVLPKAPAETYD 182
           +KAK+NELRFYRL AKKKM S NPEVRIRYKLEKAKRKE WLIEKLRKF +PKAP E YD
Sbjct: 125 RKAKLNELRFYRLKAKKKMTSPNPEVRIRYKLEKAKRKEEWLIEKLRKFDIPKAPTEAYD 184

Query: 183 PESLTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQV 242
           PE LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKV+CKPCK GQV
Sbjct: 185 PEILTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCKVGQV 244

Query: 243 HEIAEEITRLSKGIAIDIKPDNTIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQSLE 302
           +E AEE+ RLSKGI IDIKP+NTIIFYRGKNYVQP+VMSPPDTLSK+KALEKY++EQSLE
Sbjct: 245 YEYAEELARLSKGIMIDIKPNNTIIFYRGKNYVQPQVMSPPDTLSKSKALEKYRYEQSLE 304

Query: 303 HTSQFIEKLEKELEEYHEHVDRYGRGKNNAP 334
           HTSQFIEKLE ELEEYH+H+ +Y + K N P
Sbjct: 305 HTSQFIEKLENELEEYHKHLAQYRKQKENQP 335

[Close]

BLAST of Spo08283.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S1Q3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_004350 PE=4 SV=1)

HSP 1 Score: 668.7 bits (1724), Expect = 3.800e-189
Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 1


		  
Query: 6   MMQAMCRRTKCTIFNSFHFQSIPRISYDVNNLSQYSSNFHTFLQYPSKNVYYYKPLESSI 65
           MMQAMCRRTKCTIFNSFHFQSIPRISYDVNNLSQYSSNFHTFLQYPSKNVYYYKPLESSI
Sbjct: 1   MMQAMCRRTKCTIFNSFHFQSIPRISYDVNNLSQYSSNFHTFLQYPSKNVYYYKPLESSI 60

Query: 66  FWVSEGVTRWLSVRHLSNASVGVKDDNGVVRFSFGEKGDTRVSPGEGKRIMVKKKKSKKA 125
           FWVSEGVTRWLSVRHLSNASVGVKDDNGVVRFSFGEKGDTRVSPGEGKRIMVKKKKSKKA
Sbjct: 61  FWVSEGVTRWLSVRHLSNASVGVKDDNGVVRFSFGEKGDTRVSPGEGKRIMVKKKKSKKA 120

Query: 126 KVNELRFYRLMAKKKMNSSNPEVRIRYKLEKAKRKEAWLIEKLRKFVLPKAPAETYDPES 185
           KVNELRFYRLMAKKKMNSSNPEVRIRYKLEKAKRKEAWLIEKLRKFVLPKAPAETYDPES
Sbjct: 121 KVNELRFYRLMAKKKMNSSNPEVRIRYKLEKAKRKEAWLIEKLRKFVLPKAPAETYDPES 180

Query: 186 LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQVHEI 245
           LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQVHEI
Sbjct: 181 LTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQVHEI 240

Query: 246 AEEITRLSKGIAIDIKPDNTIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQSLEHTS 305
           AEEITRLSKGIAIDIKPDNTIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQSLEHTS
Sbjct: 241 AEEITRLSKGIAIDIKPDNTIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQSLEHTS 300

Query: 306 QFIEKLEKELEEYHEHVDRYGRGKNNAPKDSTALD 341
           QFIEKLEKELEEYHEHVDRYGRGKNNAPKDSTALD
Sbjct: 301 QFIEKLEKELEEYHEHVDRYGRGKNNAPKDSTALD 335

[Close]

BLAST of Spo08283.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4Y4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g138720 PE=4 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 1.100e-135
Identity = 257/341 (75.37%), Postives = 291/341 (85.34%), Query Frame = 1


		  
Query: 6   MMQAMCRRTKCTIFNSFHFQSIPRISYDVNNLSQYSSNFHTFLQYPSKNVYYYKPLESSI 65
           MMQA+ RRTKC + +S HF SI R S  VN LS+YS NFHT L+Y S N  +YKP +S+ 
Sbjct: 1   MMQALFRRTKCIVSHSSHFHSILRDSSPVNYLSRYSLNFHTCLEY-SLNSSFYKPWDSNR 60

Query: 66  FWVSEGV-TRWLSVRHLSNASVGVKDDNGVVRFSFGE----KGDTRVSPGEGK-RIMVKK 125
           + +S  V TRWL VRH+S++SVG+K DNGVVRF FG+    KG+  V   EG+ R+M KK
Sbjct: 61  YRISGDVATRWLCVRHMSSSSVGIKADNGVVRFCFGDSPDQKGNVGVVTDEGRGRMMKKK 120

Query: 126 KKSKKAKVNELRFYRLMAKKKMNSSNPEVRIRYKLEKAKRKEAWLIEKLRKFVLPKAPAE 185
           K S+K+K+NELRFYRL AKKKM SSNPEVRIRYKL KAKRKEAWLIEKLRK  LPK PAE
Sbjct: 121 KNSRKSKLNELRFYRLKAKKKMKSSNPEVRIRYKLGKAKRKEAWLIEKLRKLELPKPPAE 180

Query: 186 TYDPESLTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKP 245
           TYDPESLTEEE+FYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKP
Sbjct: 181 TYDPESLTEEERFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKP 240

Query: 246 GQVHEIAEEITRLSKGIAIDIKPDNTIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQ 305
           GQ+HEIAEE+ RLSKGI IDIKPDNT+IFYRGKNYV+PEVMSPPDTLSK KALEKY++EQ
Sbjct: 241 GQIHEIAEELARLSKGIVIDIKPDNTVIFYRGKNYVRPEVMSPPDTLSKTKALEKYKYEQ 300

Query: 306 SLEHTSQFIEKLEKELEEYHEHVDRYGRGKNNAPKDSTALD 341
           SLEHTS+FIEKLE++LEEYHEH+ R+ RGK+NA KDS ALD
Sbjct: 301 SLEHTSEFIEKLEEQLEEYHEHLTRFRRGKDNASKDSRALD 340

[Close]

BLAST of Spo08283.1 vs. UniProtKB/TrEMBL
Match: A0A061E1B7_THECC (RNA-binding CRS1 / YhbY domain protein isoform 1 OS=Theobroma cacao GN=TCM_007507 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 3.100e-106
Identity = 201/275 (73.09%), Postives = 229/275 (83.27%), Query Frame = 1


		  
Query: 61  LESSIFWVSEGVTRWLSVRHLSNASVGVKDDNGVVRFSFGEKGDTRVSPGEGKRIMVKKK 120
           LE +IFW    + +WL  R++SNASV +K D  V+RFSF  K   RV    GK    + K
Sbjct: 74  LEPNIFWHRNILCKWLCARNMSNASVELKTDEDVIRFSF-SKALGRVGSTYGKGTTKRHK 133

Query: 121 KSKKAKVNELRFYRLMAKKKMNSSNPEVRIRYKLEKAKRKEAWLIEKLRKFVLPKAPAET 180
            SK+AK+NELRFYRL AKKKMNS NPEVRIRYKLEKA+RKEAWL+EKL K+ +PKAPAET
Sbjct: 134 MSKRAKLNELRFYRLKAKKKMNSPNPEVRIRYKLEKAQRKEAWLVEKLIKYEVPKAPAET 193

Query: 181 YDPESLTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPG 240
           YDPE LTEEE+ YLKRTGEKKKNYV VGRRGVFGGVVLNMHLHWK HETVKV CKPCKPG
Sbjct: 194 YDPEILTEEERHYLKRTGEKKKNYVQVGRRGVFGGVVLNMHLHWKNHETVKVTCKPCKPG 253

Query: 241 QVHEIAEEITRLSKGIAIDIKPDNTIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQS 300
           QVHE A E+ RLSKGI IDIKP+NTIIFYRGKNYVQP++MSPPDTLSK+KALEKY++EQS
Sbjct: 254 QVHEYAGELARLSKGIVIDIKPNNTIIFYRGKNYVQPKIMSPPDTLSKSKALEKYKYEQS 313

Query: 301 LEHTSQFIEKLEKELEEYHEHVDRYGRGKNNAPKD 336
           L+HTS+FIEKLEKELEEY EH  RY + K +AP++
Sbjct: 314 LDHTSEFIEKLEKELEEYLEHKARYKKAKESAPQN 347

[Close]

BLAST of Spo08283.1 vs. UniProtKB/TrEMBL
Match: D7U8D5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0092g00060 PE=4 SV=1)

HSP 1 Score: 392.9 bits (1008), Expect = 4.000e-106
Identity = 196/264 (74.24%), Postives = 225/264 (85.23%), Query Frame = 1


		  
Query: 70  EGVTRWLSVRHLSNASVGVKDDNGVVRFSFGEKGDTRVSPGEGKRIMVKKKKSKKAKVNE 129
           + +++W   R++SN S+ +K D+ VVRF+ GE      +  +GK+ M + K S+KAK+NE
Sbjct: 6   DALSKWARARYMSNTSIELKPDSDVVRFNIGELPGKTGTSKKGKKKMRRVKMSRKAKLNE 65

Query: 130 LRFYRLMAKKKMNSSNPEVRIRYKLEKAKRKEAWLIEKLRKFVLPKAPAETYDPESLTEE 189
           LRFYRL AKKKM S NPEVRIRYKLEKAKRKE WLIEKLRKF +PKAP E YDPE LTEE
Sbjct: 66  LRFYRLKAKKKMTSPNPEVRIRYKLEKAKRKEEWLIEKLRKFDIPKAPTEAYDPEILTEE 125

Query: 190 EKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQVHEIAEEI 249
           EKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKV+CKPCK GQV+E AEE+
Sbjct: 126 EKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVICKPCKVGQVYEYAEEL 185

Query: 250 TRLSKGIAIDIKPDNTIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQSLEHTSQFIE 309
            RLSKGI IDIKP+NTIIFYRGKNYVQP+VMSPPDTLSK+KALEKY++EQSLEHTSQFIE
Sbjct: 186 ARLSKGIMIDIKPNNTIIFYRGKNYVQPQVMSPPDTLSKSKALEKYRYEQSLEHTSQFIE 245

Query: 310 KLEKELEEYHEHVDRYGRGKNNAP 334
           KLE ELEEYH+H+ +Y + K N P
Sbjct: 246 KLENELEEYHKHLAQYRKQKENQP 269

[Close]

BLAST of Spo08283.1 vs. UniProtKB/TrEMBL
Match: K7KRJ8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G236500 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 6.800e-106
Identity = 198/273 (72.53%), Postives = 230/273 (84.25%), Query Frame = 1


		  
Query: 63  SSIFWVSEGVTRWLSVRHLSNASVGVKDDNGVVRFSFGEKGDTRVSPGEGKRIMVKKKKS 122
           S+IF   + +  WL  R++SN SV +K  N V+RFS G+  D  ++  +  ++  K K S
Sbjct: 84  SNIFGSHDILGSWLPARYISNESVELKTHNDVIRFSLGKSDD--INNAKKSQLNKKFKMS 143

Query: 123 KKAKVNELRFYRLMAKKKMNSSNPEVRIRYKLEKAKRKEAWLIEKLRKFVLPKAPAETYD 182
           +KAK+NELRFYRL AKKKMNS NPEVRIRYKLEKAKRKE WLIEKLRKF +PK P ETYD
Sbjct: 144 RKAKLNELRFYRLKAKKKMNSPNPEVRIRYKLEKAKRKETWLIEKLRKFDVPKPPPETYD 203

Query: 183 PESLTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQV 242
           PE LTEEE+ YLKRTGE+KK+YVPVGRRGVFGGVVLNMHLHWK HETVKV+CKPCKPGQV
Sbjct: 204 PEILTEEERHYLKRTGERKKHYVPVGRRGVFGGVVLNMHLHWKNHETVKVICKPCKPGQV 263

Query: 243 HEIAEEITRLSKGIAIDIKPDNTIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQSLE 302
           HE AEE+ RLSKGI IDIKP+NTIIFYRGKNYV+PEVMSPP+TLSKAKALEKY++EQSLE
Sbjct: 264 HEYAEELARLSKGIVIDIKPNNTIIFYRGKNYVKPEVMSPPNTLSKAKALEKYRYEQSLE 323

Query: 303 HTSQFIEKLEKELEEYHEHVDRYGRGKNNAPKD 336
           HTSQFIEKLEKELEEYH+H+ ++ +GK +  KD
Sbjct: 324 HTSQFIEKLEKELEEYHQHLAKFKKGKEDTAKD 354

[Close]

BLAST of Spo08283.1 vs. ExPASy Swiss-Prot
Match: Y3544_ARATH (Uncharacterized CRM domain-containing protein At3g25440, chloroplastic OS=Arabidopsis thaliana GN=At3g25440 PE=2 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.600e-44
Identity = 105/227 (46.26%), Postives = 143/227 (63.00%), Query Frame = 1


		  
Query: 101 EKGDTRVSPGEGK---------RIMVKKKKSKKAKVNELRFYRLMAKKKMNSSNPEVRIR 160
           E GD  +S  E           ++  KK K K+A V  L+F+R   KK+      E +I 
Sbjct: 83  ETGDDDISKSENSSSQDGDSCTKLKRKKLKGKRAVVRWLKFFRWKKKKEFERMTSEEKIL 142

Query: 161 YKLEKAKRKEAWLIEKLRKFVLPKAPAETYDPESLTEEEKFYLKRTGEKKKNYVPVGRRG 220
            KL KA++KE  L+E ++K    ++   T+DPE LT EE FY  + G K KNYVPVGRRG
Sbjct: 143 NKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRG 202

Query: 221 VFGGVVLNMHLHWKKHETVKVVCKPCKPGQVHEIAEEITRLSKGIAIDIKPDNTIIFYRG 280
           ++ GV+LNMHLHWKKH+T++VV K   P +V EIA E+ RL+ GI +D+   NTII YRG
Sbjct: 203 IYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRG 262

Query: 281 KNYVQP--EVMSPPDTLSKAKALEKYQHEQSLEHTSQFIEKLEKELE 317
           KNYVQP  E+MSP  TL + KAL+K +   +L    ++I +LE+EL+
Sbjct: 263 KNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQ 309

[Close]

BLAST of Spo08283.1 vs. ExPASy Swiss-Prot
Match: CFM2_ARATH (CRM-domain containing factor CFM2, chloroplastic OS=Arabidopsis thaliana GN=CFM2 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.300e-19
Identity = 63/191 (32.98%), Postives = 98/191 (51.31%), Query Frame = 1


		  
Query: 139 KKMNSSNPEV---RIRYKLEKAKRKEAWLIEKLRKFVLPKAPA-ETYDPESLTEEEKFYL 198
           K    ++PE    +   KL  A  K+A   + L      ++P     D E +T +EK+ L
Sbjct: 528 KSRQRNSPEAILEKTSMKLSMALEKKANAEKVLADLENRESPQLSDIDKEGITNDEKYML 587

Query: 199 KRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQVHEIAEEITRLSK 258
           ++ G K K ++ +GRRGVF G + NMHLHWK  E VK++C        H++AE +   S 
Sbjct: 588 RKIGLKMKPFLLLGRRGVFDGTIENMHLHWKYRELVKIICNEYSIEAAHKVAEILEAESG 647

Query: 259 GIAIDIK---PDNTIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQSLEHTSQFIEKL 318
           GI + ++       II YRGKNY +P+ + P   LSK +AL++    Q  +     + KL
Sbjct: 648 GILVAVEMVSKGYAIIVYRGKNYERPQCLRPQTLLSKREALKRSVEAQRRKSLKLHVLKL 707

Query: 319 EKELEEYHEHV 323
              +EE +  +
Sbjct: 708 SNNIEELNRQL 718

[Close]

BLAST of Spo08283.1 vs. ExPASy Swiss-Prot
Match: CFM3A_ARATH (CRM-domain containing factor CFM3A, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CFM3A PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.600e-18
Identity = 68/187 (36.36%), Postives = 101/187 (54.01%), Query Frame = 1


		  
Query: 149 RIRYKLEKAKRKEAWLIEKLRKFVLPKAPAETY-DPESLTEEEKFYLKRTGEKKKNYVPV 208
           ++  KL  A+RK       L K  +   PAE   DPES+T+EE+F  ++ G K K ++ +
Sbjct: 600 KLERKLAFAERKLLKAERGLAKVEVCLKPAEQREDPESITDEERFMFRKLGLKMKAFLLL 659

Query: 209 GRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQVHEIAEEITRLSKGIAIDI---KPDN 268
           GRRGVF G V NMHLHWK  E VK++ K      V ++A  +   S GI + I       
Sbjct: 660 GRRGVFDGTVENMHLHWKYRELVKIIVKAKTFDGVKKVALALEAESGGILVSIDKVTKGY 719

Query: 269 TIIFYRGKNYVQPEVMSPPDTLSKAKAL----EKYQHEQSLEHTSQF---IEKLEKELEE 325
            II YRG++Y +P ++ P + L+K KAL    E  + E  L+H S      ++L  E+E+
Sbjct: 720 AIIVYRGQDYKRPTMLRPKNLLTKRKALARSIELQRREGLLKHISTMQAKAKQLRAEIEQ 779

[Close]

BLAST of Spo08283.1 vs. ExPASy Swiss-Prot
Match: CFM3_ORYSJ (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CFM3 PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 3.400e-18
Identity = 59/173 (34.10%), Postives = 93/173 (53.76%), Query Frame = 1


		  
Query: 149 RIRYKLEKAKRKEAWLIEKLRKFVLPKAPAETYD-PESLTEEEKFYLKRTGEKKKNYVPV 208
           ++ +KL+ A++K       L K      P E    PE++T+EE+F  ++ G + K ++ +
Sbjct: 554 KLEWKLQLAQKKIEKAERVLGKVETALKPTEGIQPPETITDEERFMFRKLGLRMKAFLLL 613

Query: 209 GRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQVHEIAEEITRLSKGIAID---IKPDN 268
           GRRGVF G + NMHLHWK  E VK++ K    G V +IA  +   S GI +    +    
Sbjct: 614 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFGDVKKIALSLEAESGGILVSVDKVSKGY 673

Query: 269 TIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQSLEHTSQFIEKLEKELEE 318
            I+ +RGK+Y +P  + P + LSK KAL +    Q  E  S  I  L + +++
Sbjct: 674 AIVVFRGKDYARPSKLRPRNLLSKRKALARSIEIQRREALSHHIATLNRRVKK 726

[Close]

BLAST of Spo08283.1 vs. ExPASy Swiss-Prot
Match: CFM3_MAIZE (CRM-domain containing factor CFM3, chloroplastic/mitochondrial OS=Zea mays GN=CFM3 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.500e-18
Identity = 59/172 (34.30%), Postives = 92/172 (53.49%), Query Frame = 1


		  
Query: 149 RIRYKLEKAKRKEAWLIEKLRKFVLPKAPAE-TYDPESLTEEEKFYLKRTGEKKKNYVPV 208
           ++ +KL  A++K       L K      P E +  PE++T+EE+F  ++ G + K ++ +
Sbjct: 546 KLEWKLSLAQKKMEKAERVLGKVETALRPTEDSRPPETITDEERFMFRKLGLRMKAFLLL 605

Query: 209 GRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQVHEIAEEITRLSKGIAID---IKPDN 268
           GRRGVF G + NMHLHWK  E VK++ K      V  IA  +   S GI +    +    
Sbjct: 606 GRRGVFDGTIENMHLHWKYRELVKILVKAKSFADVKRIALSLEAESGGILVSVDKVSKGY 665

Query: 269 TIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQSLEHTSQFIEKLEKELE 317
            I+ +RGKNY +P  + P + LSK KAL +    Q  +  S+   KL +++E
Sbjct: 666 AIVVFRGKNYRRPSSLRPRNLLSKRKALARSIELQRHQALSRHFAKLNRKVE 717

[Close]

BLAST of Spo08283.1 vs. TAIR (Arabidopsis)
Match: AT4G13070.1 (RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 361.3 bits (926), Expect = 6.500e-100
Identity = 194/304 (63.82%), Postives = 235/304 (77.30%), Query Frame = 1


		  
Query: 30  ISYDVNNLSQYSSNFHTFLQYPSKNVYYYKPLESSIFWVSEGVTRWLSVRHLSNASVGVK 89
           + Y  +N S Y  +   FLQ   K+  +   +  +  W         S R+LSN+++ ++
Sbjct: 27  LHYQSSNYSSYVKS-RPFLQVQCKSASF--DVSQAQRWNLFAYDGLFSRRYLSNSTIELR 86

Query: 90  DDNGVVRFSFGEKGDT--RVSPGEGKRIMVKKKKSKKAKVNELRFYRLMAKKKMNSSNPE 149
            D+ VVRF+F     +   V P   ++   + K S+KAKVNELRFYRL AKKKMNS NPE
Sbjct: 87  TDDNVVRFAFNNVSSSGNNVVPTRKEKKWKRAKLSRKAKVNELRFYRLKAKKKMNSPNPE 146

Query: 150 VRIRYKLEKAKRKEAWLIEKLRKFVLPKAPAETYDPESLTEEEKFYLKRTGEKKKNYVPV 209
           VRIRYKLEKAKRKE WLIEKLRK+ +PK+PAE YDPESLTEEE+ YLKRTGEK+KN+V V
Sbjct: 147 VRIRYKLEKAKRKEEWLIEKLRKYDVPKSPAEPYDPESLTEEEQHYLKRTGEKRKNFVLV 206

Query: 210 GRRGVFGGVVLNMHLHWKKHETVKVVCKPC-KPGQVHEIAEEITRLSKGIAIDIKPDNTI 269
           GRRGVFGGVVLN+HLHWKKHETVKV+CKPC KPGQVHE AEE+ RLSKGI ID+KP+NTI
Sbjct: 207 GRRGVFGGVVLNLHLHWKKHETVKVICKPCNKPGQVHEYAEELARLSKGIVIDVKPNNTI 266

Query: 270 IFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQSLEHTSQFIEKLEKELEEYHEHVDRYG 329
           + YRGKNYV+PEVMSP DTLSK KALEKY++EQSLEHTS+FIEKLEKELEEYH++V R+ 
Sbjct: 267 VLYRGKNYVRPEVMSPVDTLSKDKALEKYRYEQSLEHTSEFIEKLEKELEEYHKYVARHK 326

Query: 330 RGKN 331
           + K+
Sbjct: 327 KKKD 327

[Close]

BLAST of Spo08283.1 vs. TAIR (Arabidopsis)
Match: AT2G28480.1 (RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 227.3 bits (578), Expect = 1.500e-59
Identity = 124/224 (55.36%), Postives = 156/224 (69.64%), Query Frame = 1


		  
Query: 113 KRIMVKKKKSKKAK--VNELRFYRLMAK-KKMNSSNPEVRIRYKLEKAKRKEAWLIEKLR 172
           KR+ +K+KK ++ +   N     RL  K KK    N E RI+YKLEKAK KEA LIE+L+
Sbjct: 88  KRLKLKRKKEREERNAANRKDPRRLTVKGKKKKFVNAEERIKYKLEKAKIKEALLIERLK 147

Query: 173 KFVLPKAPAETYDPESLTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLNMHLHWKKHET 232
           ++ + K       P  +T EE+FYLK+ G+K+ NYVP+GRRGVFGGV+LNMHLHWKKHET
Sbjct: 148 RYEVAKVQGPEVRPHEITGEERFYLKKMGQKRSNYVPIGRRGVFGGVILNMHLHWKKHET 207

Query: 233 VKVVCKPCKPGQVHEIAEEITRLSKGIAIDIKPDNTIIFYRGKNYVQPEVMSPPDTLSKA 292
           VKV+C   KPGQV + AEE+ +LS G+ ++I  D+TIIFYRGK YVQP+VMSP DTLSK 
Sbjct: 208 VKVICNNSKPGQVQQYAEELAKLSGGVPVNIIGDDTIIFYRGKGYVQPQVMSPIDTLSKK 267

Query: 293 KALEKYQHEQSLEHTSQFIEKLEKELEEYHEHVDRYGRGKNNAP 334
           +A EK ++EQSLE    FI   EKELE Y+ HV  Y    N  P
Sbjct: 268 RAYEKSKYEQSLESVRHFIAIAEKELELYYRHVALYDDPNNRNP 311

[Close]

BLAST of Spo08283.1 vs. TAIR (Arabidopsis)
Match: AT3G25440.1 (RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 181.4 bits (459), Expect = 9.200e-46
Identity = 105/227 (46.26%), Postives = 143/227 (63.00%), Query Frame = 1


		  
Query: 101 EKGDTRVSPGEGK---------RIMVKKKKSKKAKVNELRFYRLMAKKKMNSSNPEVRIR 160
           E GD  +S  E           ++  KK K K+A V  L+F+R   KK+      E +I 
Sbjct: 83  ETGDDDISKSENSSSQDGDSCTKLKRKKLKGKRAVVRWLKFFRWKKKKEFERMTSEEKIL 142

Query: 161 YKLEKAKRKEAWLIEKLRKFVLPKAPAETYDPESLTEEEKFYLKRTGEKKKNYVPVGRRG 220
            KL KA++KE  L+E ++K    ++   T+DPE LT EE FY  + G K KNYVPVGRRG
Sbjct: 143 NKLRKARKKEERLMETMKKLEPSESAETTHDPEILTPEEHFYYLKMGLKCKNYVPVGRRG 202

Query: 221 VFGGVVLNMHLHWKKHETVKVVCKPCKPGQVHEIAEEITRLSKGIAIDIKPDNTIIFYRG 280
           ++ GV+LNMHLHWKKH+T++VV K   P +V EIA E+ RL+ GI +D+   NTII YRG
Sbjct: 203 IYQGVILNMHLHWKKHQTLQVVIKTFTPDEVKEIAVELARLTGGIVLDVHEGNTIIMYRG 262

Query: 281 KNYVQP--EVMSPPDTLSKAKALEKYQHEQSLEHTSQFIEKLEKELE 317
           KNYVQP  E+MSP  TL + KAL+K +   +L    ++I +LE+EL+
Sbjct: 263 KNYVQPPTEIMSPRITLPRKKALDKSKCRDALRAVRKYIPRLEQELQ 309

[Close]

BLAST of Spo08283.1 vs. TAIR (Arabidopsis)
Match: AT3G27550.1 (RNA-binding CRS1 / YhbY (CRM) domain protein)

HSP 1 Score: 157.1 bits (396), Expect = 1.900e-38
Identity = 96/216 (44.44%), Postives = 134/216 (62.04%), Query Frame = 1


		  
Query: 102 KGDTR-VSPGEGKRIMVK-KKKSKKAKVNELRFYRLMAKKKMNSSNPEVRIRYKLEKAKR 161
           KG +R +S   G+ +  K + + +K     LR  R   K K      E R+ Y L++AK+
Sbjct: 6   KGWSRGMSTSRGRSMRSKVESRMRKESGKTLREIRRAKKLKKKLMTDEERLIYNLKRAKK 65

Query: 162 KEAWLIEKLRKFVLPKAPAETYDPESLTEEEKFYLKRTGEKKKNYVPVGRRGVFGGVVLN 221
           K A L++KL+K+ LP+ P+  +DPE  T E+    K+ G K KNYVPVG RGVFGGVV N
Sbjct: 66  KVALLLQKLKKYDLPELPSPVHDPELFTSEQVQAFKKIGFKNKNYVPVGVRGVFGGVVQN 125

Query: 222 MHLHWKKHETVKVVCKPCKPGQVHEIAEEITRLSKGIAIDIKPDNTIIFYRGKNYVQPEV 281
           MH+HWK HETV+V C      ++ E+A  I RLS G+ I+I    TII +RG+NY QP+ 
Sbjct: 126 MHMHWKFHETVQVCCDNFPKEKIKEMASMIARLSGGVVINIHNVKTIIMFRGRNYRQPKN 185

Query: 282 MSPPDTLSKAKALEKYQHEQSLEHTSQFIEKLEKEL 316
           + P +TL+K KAL K + EQ+LE     I+K E++L
Sbjct: 186 LIPVNTLTKRKALFKARFEQALESQKLNIKKTEQQL 221

[Close]

BLAST of Spo08283.1 vs. TAIR (Arabidopsis)
Match: AT3G18390.1 (CRS1 / YhbY (CRM) domain-containing protein)

HSP 1 Score: 109.0 bits (271), Expect = 5.800e-24
Identity = 68/175 (38.86%), Postives = 101/175 (57.71%), Query Frame = 1


		  
Query: 149 RIRYKLEKAKRK---EAWLIEKLRKFVLPKAPAETYDPESLTEEEKFYLKRTGEKKKNYV 208
           RI++KL  A+ K      L+ K+   ++P  P   YD E ++EEE+   ++ G K K Y+
Sbjct: 615 RIQHKLNLAQSKFQRAEKLLSKIEASMIPNGP--DYDQEVISEEERAMFRKVGLKMKAYL 674

Query: 209 PVGRRGVFGGVVLNMHLHWKKHETVKVVCKPCKPGQVHEIAEEITRLSKGIAIDIK---P 268
           P+G RGVF GV+ NMHLHWK  E VK++ K      V E A  +   S G+ + I+    
Sbjct: 675 PIGIRGVFDGVIENMHLHWKHRELVKLISKQKNQAFVEETARLLEYESGGVLVAIEKVPK 734

Query: 269 DNTIIFYRGKNYVQPEVMSPPDTLSKAKALEKYQHEQSLEHTSQFIEKLEKELEE 318
              +I+YRGKNY +P  + P + L+KAKAL++    Q  E  SQ I +LE+ +E+
Sbjct: 735 GFALIYYRGKNYRRPISLRPRNLLTKAKALKRSIAMQRHEALSQHISELERTIEQ 787

The following BLAST results are available for this feature:

BLAST of Spo08283.1 vs. NCBI nr
BLAST of Spo08283.1 vs. UniProtKB/TrEMBL
BLAST of Spo08283.1 vs. ExPASy Swiss-Prot
BLAST of Spo08283.1 vs. TAIR (Arabidopsis)

BLAST of Spo08283.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902239677\|gb\|KNA25671.1\|	5.4e-189	100.	hypothetical protein SOVF_0043...	[more]
gi\|731339734\|ref\|XP_010681016.1\|	1.5e-135	75.3	PREDICTED: uncharacterized CRM...	[more]
gi\|731339738\|ref\|XP_010681018.1\|	3.5e-119	80.2	PREDICTED: uncharacterized CRM...	[more]
gi\|590688605\|ref\|XP_007042997.1\|	4.4e-106	73.0	RNA-binding CRS1 / YhbY domain...	[more]
gi\|731405604\|ref\|XP_010655847.1\|	4.4e-106	72.6	PREDICTED: uncharacterized CRM...	[more]

BLAST of Spo08283.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S1Q3_SPIOL	3.8e-189	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C4Y4_BETVU	1.1e-135	75.3	Uncharacterized protein OS=Bet...	[more]
A0A061E1B7_THECC	3.1e-106	73.0	RNA-binding CRS1 / YhbY domain...	[more]
D7U8D5_VITVI	4.0e-106	74.2	Putative uncharacterized prote...	[more]
K7KRJ8_SOYBN	6.8e-106	72.5	Uncharacterized protein OS=Gly...	[more]

BLAST of Spo08283.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
Y3544_ARATH	1.6e-44	46.2	Uncharacterized CRM domain-con...	[more]
CFM2_ARATH	5.3e-19	32.9	CRM-domain containing factor C...	[more]
CFM3A_ARATH	2.6e-18	36.3	CRM-domain containing factor C...	[more]
CFM3_ORYSJ	3.4e-18	34.1	CRM-domain containing factor C...	[more]
CFM3_MAIZE	4.5e-18	34.3	CRM-domain containing factor C...	[more]

BLAST of Spo08283.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT4G13070.1	6.5e-100	63.8	RNA-binding CRS1 / YhbY (CRM) ...	[more]
AT2G28480.1	1.5e-59	55.3	RNA-binding CRS1 / YhbY (CRM) ...	[more]
AT3G25440.1	9.2e-46	46.2	RNA-binding CRS1 / YhbY (CRM) ...	[more]
AT3G27550.1	1.9e-38	44.4	RNA-binding CRS1 / YhbY (CRM) ...	[more]
AT3G18390.1	5.8e-24	38.8	CRS1 / YhbY (CRM) domain-conta...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001890	RNA-binding, CRM domain	GENE3D	3.30.110.60		coord: 185..280 score: 1.1
IPR001890	RNA-binding, CRM domain	PFAM	PF01985	CRS1_YhbY	coord: 186..270 score: 5.5
IPR001890	RNA-binding, CRM domain	SMART	SM01103	CRS1_YhbY_2	coord: 186..270 score: 1.2
IPR001890	RNA-binding, CRM domain	PROFILE	PS51295	CRM	coord: 184..281 score: 18
IPR001890	RNA-binding, CRM domain	unknown	SSF75471	YhbY-like	coord: 185..280 score: 5.23
None	No IPR available	unknown	Coil	Coil	coord: 301..328 scor
None	No IPR available	PANTHER	PTHR31426	FAMILY NOT NAMED	coord: 1..335 score: 1.5E
None	No IPR available	PANTHER	PTHR31426:SF3	SUBFAMILY NOT NAMED	coord: 1..335 score: 1.5E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding