Spo08334.1 (mRNA) | SpinachBase

Overview


Name	Spo08334.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	DNA-binding enhancer family protein
Location	chr3 : 11300404 .. 11301918 (-)
Sequence length	671

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTATGTTGGGGAGGAAAAGTCGGACCATCGAACTGGGGTGGGATCAGAGCAGATGATGTAAAATATCAGGGAGCAGGTGTGCCATGCTGGGTTAGGTGACCCAAGACTTGACCTTTTATTCATCAAGTCAACCCTCGTGTGAGGTTTAAACTGAATGGAAATATTGATGAGTTTGAATACTAAAAGATAGTTATGGTAACAACCAGAGCATATTACTCACTCCACCAAAGAAAGTTCCATAATCCATTATCTCTCCAAAATTGGAGAGATTTGGAGGAAAGATGGAGCTCCACCTTCCCCTCTCTTCCTCCTTTTTCCCTCTCCTTTCTTTCCCTTATATTTTGTTATCCAAACAAAGCATAATGGTTGTGTTTGAATCCTAAAATCTAGATATAAGACTGTAATCGTTACCTTTTTTTCTTCATGTCAGACAGCTATTGTTGCTTTCTCCTCTGACTTCCATGTAGAATGTGATGAATCATTGCTGTATTGGACTTGTTTTGAGTAAGGTCAGGGACAGTTTATATAATCTATATTATCCATAGACTGATTTGTGAGACTTGTCAAAATTCTTTATTCTTCCTTATGACAGGTAATCCTTTCTGCCTACCCGGTGGCTTTCAATATCAATCTGTAATGCTAACAGATTCAAGAATCTTCCCTTTACGACAATTTAGCCTACAATTTCTATTCAATACTGAAAAGTTGGCCCCAAGTTCTCATATTGGTTTAATTAACTTATGATCACCCCATTCATTTTTGTTATTAACTTTCTTCATATCAGTCCTTAATTTAGCATTTACTTCCGTTCTTTTTGTGATTGTTCTAGCTGCAGGCCTACTTTGCCCCCTCCCCTTCCCCTTTTAATAATCATTTTAACACTCTTCTCATTTCACCGGCTAACAGGGAAAAAGAATTGGCTGCTGTAAAGATCAATGCGGAAGATATCGATACAATTGCAAATGAACTTGAGGTTAATTTCATACTCTATTTACACTGGTTCTGTTTTCTAATTCTCCTGCCTCATTTGTAACACTCTAAATCTTCCTCCTAACAGTTGGACAGGAAGGTTGCTGAGAGAACCTTGCGAGAGCACAAGGGTGATGCTGTTGCAGCCGTACGATCCCTGCTTGGCCTGCTTCACTAGAAGTTTCCCTGCTTGGCCTGCTTCATAGATTCAATCTGTTAATCTAGTTTTTCGGAATTTTCATGAATATTTTGTTTCTTGTAACTTGATCATGTGTGAAAGTTGGTAGTTGTTTCCATACTTTGCTTTACTACACAGTAAACTGGCATAACAAACCCAAAACCAGTATAATGTACGGAGTATGAAGAACTTCCAGATAATTTTTTCTGCTAATTGAGACAGATTAACATGAATATTTGCTTATTGTATTGCGTGTTCATGAACATTGTATTGCGTGTACCTGCATAGTTCATGGCATATTATTTGCTTATTTACAGGCAGAAAGGTCAATACCGGCCTGTTTGCTACACGGTGTATTCTCA

mRNA sequence

ATGGCTGTATGTTGGGGAGGAAAAGTCGGACCATCGAACTGGGGTGGGATCAGAGCAGATGATGTAAAATATCAGGGAGCAGCTATTGTTGCTTTCTCCTCTGACTTCCATGTAGAATGTGATGAATCATTGCTGTATTGGACTTGTTTTGAGGAAAAAGAATTGGCTGCTGTAAAGATCAATGCGGAAGATATCGATACAATTGCAAATGAACTTGAGTTGGACAGGAAGGTTGCTGAGAGAACCTTGCGAGAGCACAAGGGTGATGCTGTTGCAGCCGTACGATCCCTGCTTGGCCTGCTTCACTAGAAGTTTCCCTGCTTGGCCTGCTTCATAGATTCAATCTGTTAATCTAGTTTTTCGGAATTTTCATGAATATTTTGTTTCTTGTAACTTGATCATGTGTGAAAGTTGGTAGTTGTTTCCATACTTTGCTTTACTACACAGTAAACTGGCATAACAAACCCAAAACCAGTATAATGTACGGAGTATGAAGAACTTCCAGATAATTTTTTCTGCTAATTGAGACAGATTAACATGAATATTTGCTTATTGTATTGCGTGTTCATGAACATTGTATTGCGTGTACCTGCATAGTTCATGGCATATTATTTGCTTATTTACAGGCAGAAAGGTCAATACCGGCCTGTTTGCTACACGGTGTATTCTCA

Coding sequence (CDS)

ATGGCTGTATGTTGGGGAGGAAAAGTCGGACCATCGAACTGGGGTGGGATCAGAGCAGATGATGTAAAATATCAGGGAGCAGCTATTGTTGCTTTCTCCTCTGACTTCCATGTAGAATGTGATGAATCATTGCTGTATTGGACTTGTTTTGAGGAAAAAGAATTGGCTGCTGTAAAGATCAATGCGGAAGATATCGATACAATTGCAAATGAACTTGAGTTGGACAGGAAGGTTGCTGAGAGAACCTTGCGAGAGCACAAGGGTGATGCTGTTGCAGCCGTACGATCCCTGCTTGGCCTGCTTCACTAG

Protein sequence

MAVCWGGKVGPSNWGGIRADDVKYQGAAIVAFSSDFHVECDESLLYWTCFEEKELAAVKINAEDIDTIANELELDRKVAERTLREHKGDAVAAVRSLLGLLH

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo08334	Spo08334	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo08334.1	Spo08334.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08334.1.CDS.4	Spo08334.1.CDS.4	CDS
Spo08334.1.CDS.3	Spo08334.1.CDS.3	CDS
Spo08334.1.CDS.2	Spo08334.1.CDS.2	CDS
Spo08334.1.CDS.1	Spo08334.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08334.1.utr3p.1	Spo08334.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08334.1.exon.4	Spo08334.1.exon.4	exon
Spo08334.1.exon.3	Spo08334.1.exon.3	exon
Spo08334.1.exon.2	Spo08334.1.exon.2	exon
Spo08334.1.exon.1	Spo08334.1.exon.1	exon

Homology

[Close]

BLAST of Spo08334.1 vs. NCBI nr
Match: gi|731322154|ref|XP_010671737.1| (PREDICTED: huntingtin-interacting protein K [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 84.3 bits (207), Expect = 1.300e-13
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 1


		  
Query: 52  EKELAAVKINAEDIDTIANELELDRKVAERTLREHKGDAVAAVRSLL 99
           EKELAAVKINA DID IANELELD+KVAERTLREHKGDAVAA+RSLL
Sbjct: 63  EKELAAVKINASDIDVIANELELDKKVAERTLREHKGDAVAAIRSLL 109

[Close]

BLAST of Spo08334.1 vs. NCBI nr
Match: gi|747104998|ref|XP_011100759.1| (PREDICTED: huntingtin-interacting protein K [Sesamum indicum])

HSP 1 Score: 83.2 bits (204), Expect = 2.900e-13
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1


		  
Query: 52  EKELAAVKINAEDIDTIANELELDRKVAERTLREHKGDAVAAVRSLL 99
           EKELAAVKINA D+D IANELELD+KVAERTLREHKGDAVAA+RSLL
Sbjct: 63  EKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRSLL 109

[Close]

BLAST of Spo08334.1 vs. NCBI nr
Match: gi|629087117|gb|KCW53474.1| (hypothetical protein EUGRSUZ_J02724 [Eucalyptus grandis])

HSP 1 Score: 82.8 bits (203), Expect = 3.800e-13
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1


		  
Query: 52 EKELAAVKINAEDIDTIANELELDRKVAERTLREHKGDAVAAVRSLL 99
          EKELAAVKINA D+D IAN+LELDRKVAERTLREHKGDAVAA+RSLL
Sbjct: 40 EKELAAVKINAADVDIIANKLELDRKVAERTLREHKGDAVAAIRSLL 86

[Close]

BLAST of Spo08334.1 vs. NCBI nr
Match: gi|702487264|ref|XP_010034766.1| (PREDICTED: huntingtin-interacting protein K-like, partial [Eucalyptus grandis])

HSP 1 Score: 82.8 bits (203), Expect = 3.800e-13
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1


		  
Query: 52 EKELAAVKINAEDIDTIANELELDRKVAERTLREHKGDAVAAVRSLL 99
          EKELAAVKINA D+D IAN+LELDRKVAERTLREHKGDAVAA+RSLL
Sbjct: 19 EKELAAVKINAADVDIIANKLELDRKVAERTLREHKGDAVAAIRSLL 65

[Close]

BLAST of Spo08334.1 vs. NCBI nr
Match: gi|702446998|ref|XP_010024798.1| (PREDICTED: huntingtin-interacting protein K [Eucalyptus grandis])

HSP 1 Score: 82.8 bits (203), Expect = 3.800e-13
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 1


		  
Query: 52  EKELAAVKINAEDIDTIANELELDRKVAERTLREHKGDAVAAVRSLL 99
           EKELAAVKINA D D IANELELDRKVAERTLREHKGDAVAA+RSLL
Sbjct: 64  EKELAAVKINAADADIIANELELDRKVAERTLREHKGDAVAAIRSLL 110

[Close]

BLAST of Spo08334.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FK34_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g054270 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.100e-14
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 1


		  
Query: 52  EKELAAVKINAEDIDTIANELELDRKVAERTLREHKGDAVAAVRSLL 99
           EKELAAVKINA DID IANELELD+KVAERTLREHKGDAVAA+RSLL
Sbjct: 63  EKELAAVKINASDIDVIANELELDKKVAERTLREHKGDAVAAIRSLL 109

[Close]

BLAST of Spo08334.1 vs. UniProtKB/TrEMBL
Match: A0A059B6K9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04047 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.700e-13
Identity = 43/47 (91.49%), Postives = 44/47 (93.62%), Query Frame = 1


		  
Query: 52  EKELAAVKINAEDIDTIANELELDRKVAERTLREHKGDAVAAVRSLL 99
           EKELAAVKINA D D IANELELDRKVAERTLREHKGDAVAA+RSLL
Sbjct: 64  EKELAAVKINAADADIIANELELDRKVAERTLREHKGDAVAAIRSLL 110

[Close]

BLAST of Spo08334.1 vs. UniProtKB/TrEMBL
Match: A0A059AIC6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02724 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.700e-13
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1


		  
Query: 52 EKELAAVKINAEDIDTIANELELDRKVAERTLREHKGDAVAAVRSLL 99
          EKELAAVKINA D+D IAN+LELDRKVAERTLREHKGDAVAA+RSLL
Sbjct: 40 EKELAAVKINAADVDIIANKLELDRKVAERTLREHKGDAVAAIRSLL 86

[Close]

BLAST of Spo08334.1 vs. UniProtKB/TrEMBL
Match: A0A0D2RA78_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G067500 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.500e-13
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 1


		  
Query: 52  EKELAAVKINAEDIDTIANELELDRKVAERTLREHKGDAVAAVRSLL 99
           E+ELAAVKINA D+D IANELELD+KVAERTLREHKGDAVAA+RSLL
Sbjct: 63  ERELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRSLL 109

[Close]

BLAST of Spo08334.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QZU3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G030300 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.900e-13
Identity = 41/47 (87.23%), Postives = 45/47 (95.74%), Query Frame = 1


		  
Query: 52  EKELAAVKINAEDIDTIANELELDRKVAERTLREHKGDAVAAVRSLL 99
           EKELAAVKINA ++D IANELELD+KVAERTLREHKGDAVAA+RSLL
Sbjct: 63  EKELAAVKINAAEVDIIANELELDKKVAERTLREHKGDAVAAIRSLL 109

[Close]

BLAST of Spo08334.1 vs. TAIR (Arabidopsis)
Match: AT3G06610.1 (DNA-binding enhancer protein-related)

HSP 1 Score: 69.7 bits (169), Expect = 1.200e-12
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1


		  
Query: 52  EKELAAVKINAEDIDTIANELELDRKVAERTLREHKGDAVAAVRSLL 99
           EKELA+VKIN  D++ I NELE+++ VAERTLREHKGDAVAA R LL
Sbjct: 64  EKELASVKINPADVEFIVNELEIEKNVAERTLREHKGDAVAATRQLL 110

The following BLAST results are available for this feature:

BLAST of Spo08334.1 vs. NCBI nr
BLAST of Spo08334.1 vs. UniProtKB/TrEMBL
BLAST of Spo08334.1 vs. ExPASy Swiss-Prot
BLAST of Spo08334.1 vs. TAIR (Arabidopsis)

BLAST of Spo08334.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|731322154\|ref\|XP_010671737.1\|	1.3e-13	91.4	PREDICTED: huntingtin-interact...	[more]
gi\|747104998\|ref\|XP_011100759.1\|	2.9e-13	89.3	PREDICTED: huntingtin-interact...	[more]
gi\|629087117\|gb\|KCW53474.1\|	3.8e-13	89.3	hypothetical protein EUGRSUZ_J...	[more]
gi\|702487264\|ref\|XP_010034766.1\|	3.8e-13	89.3	PREDICTED: huntingtin-interact...	[more]
gi\|702446998\|ref\|XP_010024798.1\|	3.8e-13	91.4	PREDICTED: huntingtin-interact...	[more]

BLAST of Spo08334.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8FK34_BETVU	9.1e-14	91.4	Uncharacterized protein OS=Bet...	[more]
A0A059B6K9_EUCGR	2.7e-13	91.4	Uncharacterized protein OS=Euc...	[more]
A0A059AIC6_EUCGR	2.7e-13	89.3	Uncharacterized protein OS=Euc...	[more]
A0A0D2RA78_GOSRA	4.5e-13	87.2	Uncharacterized protein OS=Gos...	[more]
A0A0D2QZU3_GOSRA	5.9e-13	87.2	Uncharacterized protein OS=Gos...	[more]

BLAST of Spo08334.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo08334.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G06610.1	1.2e-12	72.3	DNA-binding enhancer protein-r...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 69..89 scor
None	No IPR available	GENE3D	1.10.8.10		coord: 60..97 score: 3.
None	No IPR available	PANTHER	PTHR31184	FAMILY NOT NAMED	coord: 52..100 score: 9.2
None	No IPR available	PANTHER	PTHR31184:SF3	SUBFAMILY NOT NAMED	coord: 52..100 score: 9.2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005829	cytosol
molecular_function	GO:0003677	DNA binding