Spo08407.1 (mRNA)

Overview
NameSpo08407.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02784 : 24478 .. 25573 (+)
Sequence length522
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGTCCTCCCTCCTCTTATGTCTGCATCCATCGCTCGTCCTTTTCGTCTCCCCTCCTCCTCTGTTCCAGCGTAACTAATTGGTTAATGCTTTCAGATTCTTTTGCCCCTTCTCTCTACTTCCCCTTCACTAACTCTTTTATTCCAAATTCCACCCAAAAATCGATACAAAAGTAAAGCAGAACCCACCAATTAATTCCCCTCAACCCCTCCAATTTCCATTATTTTGATCGGAAAAAATGGATCTGTGGTCAGTTCATATCAAATACAATAACCCATCTCCCATTTTTGCTCGAAGTTCATTTCCAGAGAAACCCAGTTCGTTTAATTTTGTTAAGAATTCGCCATTTTCAGTTGAAGATGGTGGGCGTGTTTTTGAGTTTAGAATTTCAAAGCGCAAGTATTCTCTCTCTCATAACAGTTCCTTCATTGTTAAATCTATGGGGAAGAAGGATTCTGATAATTTTTCATCTTCTTCAGGTACCCTTTTAGCCTTTCTCTATTTTGGGTACTTTTGATTTTTGCATTTTATTTTGCTGTAATTGTTTATACTGTTGCTTTTTACTTTCTTGAATTCTGTGTGTTTTTTATGGGACTTTTTTGAAATTTAGACATTAGTTTAGTTACAGATTTTGTCATGAGTGGATGCTAACTAATTTAGTGGATTAAAGCATTTAGGATGGTACCCAAAACCTCAGCTCAAATCCCGCTTGGGATTGGAATAATTTTGTACACATTATGGTCTTGCATATTGGGATTGTGAAATTGAAACTGGTAGAAATGGGGTTGGGGGGAGGGGGGCATTAAGTAGCCTTGCCATATTAGGGGCTAAAAGTTGGAAATATCGGGTGGGATGTTCATGTTTCGGAAGTGATTATAATGTCTAGTTGAGTTTTACTGGCAAATGTGGAAACTGTGTAGTATTCATCTCAGAATTCTCCTACTATCACATGGTCATATCTCATTCACTTGGTAGTGAAGATGGTTTATCTTATAAGGTTTCATTTCAAGGTTAATTTGCCATATAGTCTCCGCACTTCAACGTATGACGCAGGCCTTGCTCGGCACTGTTGTGTGGCTGACGAGAGGACTGACTAG

mRNA sequence

CTGTCCTCCCTCCTCTTATGTCTGCATCCATCGCTCGTCCTTTTCGTCTCCCCTCCTCCTCTGTTCCAGCGTAACTAATTGGTTAATGCTTTCAGATTCTTTTGCCCCTTCTCTCTACTTCCCCTTCACTAACTCTTTTATTCCAAATTCCACCCAAAAATCGATACAAAAGTAAAGCAGAACCCACCAATTAATTCCCCTCAACCCCTCCAATTTCCATTATTTTGATCGGAAAAAATGGATCTGTGGTCAGTTCATATCAAATACAATAACCCATCTCCCATTTTTGCTCGAAGTTCATTTCCAGAGAAACCCAGTTCGTTTAATTTTGTTAAGAATTCGCCATTTTCAGTTGAAGATGGTGGGCGTGTTTTTGAGTTTAGAATTTCAAAGCGCAAGTATTCTCTCTCTCATAACAGTTCCTTCATTGTTAAATCTATGGGGAAGAAGGATTCTGATAATTTTTCATCTTCTTCAGGCCTTGCTCGGCACTGTTGTGTGGCTGACGAGAGGACTGACTAG

Coding sequence (CDS)

ATGGATCTGTGGTCAGTTCATATCAAATACAATAACCCATCTCCCATTTTTGCTCGAAGTTCATTTCCAGAGAAACCCAGTTCGTTTAATTTTGTTAAGAATTCGCCATTTTCAGTTGAAGATGGTGGGCGTGTTTTTGAGTTTAGAATTTCAAAGCGCAAGTATTCTCTCTCTCATAACAGTTCCTTCATTGTTAAATCTATGGGGAAGAAGGATTCTGATAATTTTTCATCTTCTTCAGGCCTTGCTCGGCACTGTTGTGTGGCTGACGAGAGGACTGACTAG

Protein sequence

MDLWSVHIKYNNPSPIFARSSFPEKPSSFNFVKNSPFSVEDGGRVFEFRISKRKYSLSHNSSFIVKSMGKKDSDNFSSSSGLARHCCVADERTD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo08407Spo08407gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo08407.1Spo08407.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08407.1.exon.1Spo08407.1.exon.1exon
Spo08407.1.exon.2Spo08407.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08407.1.utr5p.1Spo08407.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08407.1.CDS.1Spo08407.1.CDS.1CDS
Spo08407.1.CDS.2Spo08407.1.CDS.2CDS


Homology
[Close]
BLAST of Spo08407.1 vs. NCBI nr
Match: gi|902228507|gb|KNA21133.1| (hypothetical protein SOVF_046170 [Spinacia oleracea])

HSP 1 Score: 166.0 bits (419), Expect = 3.100e-38
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 1 

		  

Query: 1  MDLWSVHIKYNNPSPIFARSSFPEKPSSFNFVKNSPFSVEDGGRVFEFRISKRKYSLSHN 60
          MDLWSVHIKYNNPSPIFARSSFPEKPSSFNFVKNSPFSVEDGGRVFEFRISKRKYSLSHN
Sbjct: 1  MDLWSVHIKYNNPSPIFARSSFPEKPSSFNFVKNSPFSVEDGGRVFEFRISKRKYSLSHN 60

Query: 61 SSFIVKSMGKKDSDNFSSSSGLARH 86
          SSFIVKSMGKKDSDNFSSSSG   H
Sbjct: 61 SSFIVKSMGKKDSDNFSSSSGNGDH 85
[Close]
BLAST of Spo08407.1 vs. NCBI nr
Match: gi|731313910|ref|XP_010683164.1| (PREDICTED: uncharacterized protein LOC104897895 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 116.7 bits (291), Expect = 2.200e-23
Identity = 63/88 (71.59%), Postives = 69/88 (78.41%), Query Frame = 1 

		  

Query: 1  MDLWSVHIKYNNPSPIFARSSFPEKPSSFNFVKNSPFSVEDGGRVFEFRISKRKYSLSH- 60
          MDLWSVH+KYNNPSPI AR+S  EK +SFNFVKNSPFSVED  RVFE RI KRKY  SH 
Sbjct: 1  MDLWSVHVKYNNPSPILARNSCLEKSASFNFVKNSPFSVED--RVFEIRIPKRKYCFSHG 60

Query: 61 --NSSFIVKSMGKKDSDNFSSSSGLARH 86
             +  IVK+MGKK+SDNFSSSSG   H
Sbjct: 61 YNKNPAIVKAMGKKNSDNFSSSSGNGDH 86
[Close]
BLAST of Spo08407.1 vs. NCBI nr
Match: gi|703112349|ref|XP_010100097.1| (hypothetical protein L484_014286 [Morus notabilis])

HSP 1 Score: 73.6 bits (179), Expect = 2.100e-10
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 1 

		  

Query: 1  MDLWSVHIKYNNPSPIFARSSFPEKPSSFNFVK--NSPFSVEDGGRVFEFRISKRKYSLS 60
          MDLWSV +KY   SP+F R+SFPEKP S N  K  NS   + + GRVFE R+ KR+ + S
Sbjct: 1  MDLWSVQVKYTGRSPLFLRNSFPEKPISLNPGKKWNSLLGIGE-GRVFEIRVLKRRVTSS 60

Query: 61 HNSSFIVKSMGKKDSDNFSSS 80
             SF+V++MGKK+  N S S
Sbjct: 61 GLPSFVVRAMGKKNHGNSSFS 80
[Close]
BLAST of Spo08407.1 vs. NCBI nr
Match: gi|225460185|ref|XP_002279455.1| (PREDICTED: uncharacterized protein LOC100260279 [Vitis vinifera])

HSP 1 Score: 67.0 bits (162), Expect = 2.000e-8
Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 1 

		  

Query: 1  MDLWSVHIKYNNPSPIFARSSFPEKPSSFNFVKNSPFSVEDGGRVFEFRISKRKYSLSHN 60
          MDLW  HIK  N SP+  R+SF E+P S    K   F  EDG R+FE R++ RK      
Sbjct: 1  MDLWCAHIKNPNLSPLLLRNSFSERPFSCYLAKVGSFRPEDG-RLFEIRVASRKA----- 60

Query: 61 SSFIVKSMGKKDSDNFSSS 80
          SS +V++MGKK+ DN SSS
Sbjct: 61 SSLVVRAMGKKNHDNSSSS 73
[Close]
BLAST of Spo08407.1 vs. NCBI nr
Match: gi|645224395|ref|XP_008219088.1| (PREDICTED: uncharacterized protein LOC103319339 [Prunus mume])

HSP 1 Score: 58.9 bits (141), Expect = 5.400e-6
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 1 

		  

Query: 1  MDLWSVHIKYNNPSPIFARSSFPEKPSSFNF--VKNSPFSVEDGGRVFEFRI--SKRKYS 60
          MDL S+H+K  N SP   R+SF EKP S+NF  V+ S   VEDG R FE  +  SKR+ S
Sbjct: 1  MDLCSLHVKNINRSPFMHRNSFTEKPISWNFGNVRPSWAGVEDG-RDFESGVLNSKRRVS 60

Query: 61 LSHNSSFIVKSMGKK----DSDNFSSSSG 82
           +   S +V++MGKK    +S N SSSSG
Sbjct: 61 SNGFRSLVVRAMGKKNNNGNSSNSSSSSG 88
[Close]
BLAST of Spo08407.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNU6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_046170 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.200e-38
Identity = 82/85 (96.47%), Postives = 82/85 (96.47%), Query Frame = 1 

		  

Query: 1  MDLWSVHIKYNNPSPIFARSSFPEKPSSFNFVKNSPFSVEDGGRVFEFRISKRKYSLSHN 60
          MDLWSVHIKYNNPSPIFARSSFPEKPSSFNFVKNSPFSVEDGGRVFEFRISKRKYSLSHN
Sbjct: 1  MDLWSVHIKYNNPSPIFARSSFPEKPSSFNFVKNSPFSVEDGGRVFEFRISKRKYSLSHN 60

Query: 61 SSFIVKSMGKKDSDNFSSSSGLARH 86
          SSFIVKSMGKKDSDNFSSSSG   H
Sbjct: 61 SSFIVKSMGKKDSDNFSSSSGNGDH 85
[Close]
BLAST of Spo08407.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FUM9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g012550 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.500e-23
Identity = 63/88 (71.59%), Postives = 69/88 (78.41%), Query Frame = 1 

		  

Query: 1  MDLWSVHIKYNNPSPIFARSSFPEKPSSFNFVKNSPFSVEDGGRVFEFRISKRKYSLSH- 60
          MDLWSVH+KYNNPSPI AR+S  EK +SFNFVKNSPFSVED  RVFE RI KRKY  SH 
Sbjct: 1  MDLWSVHVKYNNPSPILARNSCLEKSASFNFVKNSPFSVED--RVFEIRIPKRKYCFSHG 60

Query: 61 --NSSFIVKSMGKKDSDNFSSSSGLARH 86
             +  IVK+MGKK+SDNFSSSSG   H
Sbjct: 61 YNKNPAIVKAMGKKNSDNFSSSSGNGDH 86
[Close]
BLAST of Spo08407.1 vs. UniProtKB/TrEMBL
Match: W9RBS4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014286 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.500e-10
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 1 

		  

Query: 1  MDLWSVHIKYNNPSPIFARSSFPEKPSSFNFVK--NSPFSVEDGGRVFEFRISKRKYSLS 60
          MDLWSV +KY   SP+F R+SFPEKP S N  K  NS   + + GRVFE R+ KR+ + S
Sbjct: 1  MDLWSVQVKYTGRSPLFLRNSFPEKPISLNPGKKWNSLLGIGE-GRVFEIRVLKRRVTSS 60

Query: 61 HNSSFIVKSMGKKDSDNFSSS 80
             SF+V++MGKK+  N S S
Sbjct: 61 GLPSFVVRAMGKKNHGNSSFS 80
[Close]
BLAST of Spo08407.1 vs. UniProtKB/TrEMBL
Match: A5ARB7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g06810 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-8
Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 1 

		  

Query: 1  MDLWSVHIKYNNPSPIFARSSFPEKPSSFNFVKNSPFSVEDGGRVFEFRISKRKYSLSHN 60
          MDLW  HIK  N SP+  R+SF E+P S    K   F  EDG R+FE R++ RK      
Sbjct: 1  MDLWCAHIKNPNLSPLLLRNSFSERPFSCYLAKVGSFRPEDG-RLFEIRVASRKA----- 60

Query: 61 SSFIVKSMGKKDSDNFSSS 80
          SS +V++MGKK+ DN SSS
Sbjct: 61 SSLVVRAMGKKNHDNSSSS 73
[Close]
BLAST of Spo08407.1 vs. UniProtKB/TrEMBL
Match: M5XCW8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007604mg PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.800e-6
Identity = 44/89 (49.44%), Postives = 56/89 (62.92%), Query Frame = 1 

		  

Query: 1  MDLWSVHIKYNNPSPIFARSSFPEKPSSFNF--VKNSPFSVEDGGRVFEFRI--SKRKYS 60
          MDL S+H+K  N SP   R+SF EKP S+NF  V+ S   VEDG R FE  +  SKR+ S
Sbjct: 1  MDLCSLHVKNINRSPFMHRNSFTEKPISWNFGNVRPSWAGVEDG-RDFESGVLNSKRRVS 60

Query: 61 LSHNSSFIVKSMGKK----DSDNFSSSSG 82
           +   S +V++MGKK    +S N SSSSG
Sbjct: 61 SNGFRSLVVRAMGKKNNNGNSSNSSSSSG 88
The following BLAST results are available for this feature:
BLAST of Spo08407.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902228507|gb|KNA21133.1|3.1e-3896.4hypothetical protein SOVF_0461... [more]
gi|731313910|ref|XP_010683164.1|2.2e-2371.5PREDICTED: uncharacterized pro... [more]
gi|703112349|ref|XP_010100097.1|2.1e-1051.8hypothetical protein L484_0142... [more]
gi|225460185|ref|XP_002279455.1|2.0e-849.3PREDICTED: uncharacterized pro... [more]
gi|645224395|ref|XP_008219088.1|5.4e-649.4PREDICTED: uncharacterized pro... [more]
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BLAST of Spo08407.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RNU6_SPIOL2.2e-3896.4Uncharacterized protein OS=Spi... [more]
A0A0J8FUM9_BETVU1.5e-2371.5Uncharacterized protein OS=Bet... [more]
W9RBS4_9ROSA1.5e-1051.8Uncharacterized protein OS=Mor... [more]
A5ARB7_VITVI1.4e-849.3Putative uncharacterized prote... [more]
M5XCW8_PRUPE3.8e-649.4Uncharacterized protein OS=Pru... [more]
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BLAST of Spo08407.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08407.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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