Spo08478.1 (mRNA) | SpinachBase

Overview


Name	Spo08478.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RNA ligase/cyclic nucleotide phosphodiesterase family protein
Location	chr1 : 9460317 .. 9460868 (-)
Sequence length	552

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACAAGGCTATTCAATCGAACTTTACTTCGATCCAGCCCTAGAAAACCAAATCCTCAAAGCTTGGAACGTCTTAGCTCGTCGCCAAATCAGTACCCAGCTTATAGAAATCGAATCCCGGCCCCACATAACCCTTTTCTCATCGCCATTTTTGGAGCCATCAAAAGTTGAACCTTTAATCAAGTCATTTGCAGCAAAACAAGAACCCTTACTCCTGAATTTCTCCTCAATTGGGTCACTCCCAAATGAGGGTAACCTCCTTTTTCTCTCTCCTACCCCTACATTGTCTCTCCTCCAATTCCATTCCCAGCTCTGTGATCTGCTGAAGAAAGAAGGGGTTGAAATTGGGGAAGATTATCGAGTCGATTCGTGGGTGCCCGTCTGCCCGGTTGCGCAGGAGGTGCCGAAGAATCGAATGGCCGAAGCGTTTAGTGTGCTGAGGGATTTGAAGTTGCCTATTGGTGGGTATGCTATGGATATTGGGTTAGTTGAGTTTTCACCGGTGCGGGAGTTTTTCTCTTTTATTCTTGGCAACACTTTAGATGGGTAA

mRNA sequence

ATGTCACAAGGCTATTCAATCGAACTTTACTTCGATCCAGCCCTAGAAAACCAAATCCTCAAAGCTTGGAACGTCTTAGCTCGTCGCCAAATCAGTACCCAGCTTATAGAAATCGAATCCCGGCCCCACATAACCCTTTTCTCATCGCCATTTTTGGAGCCATCAAAAGTTGAACCTTTAATCAAGTCATTTGCAGCAAAACAAGAACCCTTACTCCTGAATTTCTCCTCAATTGGGTCACTCCCAAATGAGGGTAACCTCCTTTTTCTCTCTCCTACCCCTACATTGTCTCTCCTCCAATTCCATTCCCAGCTCTGTGATCTGCTGAAGAAAGAAGGGGTTGAAATTGGGGAAGATTATCGAGTCGATTCGTGGGTGCCCGTCTGCCCGGTTGCGCAGGAGGTGCCGAAGAATCGAATGGCCGAAGCGTTTAGTGTGCTGAGGGATTTGAAGTTGCCTATTGGTGGGTATGCTATGGATATTGGGTTAGTTGAGTTTTCACCGGTGCGGGAGTTTTTCTCTTTTATTCTTGGCAACACTTTAGATGGGTAA

Coding sequence (CDS)

ATGTCACAAGGCTATTCAATCGAACTTTACTTCGATCCAGCCCTAGAAAACCAAATCCTCAAAGCTTGGAACGTCTTAGCTCGTCGCCAAATCAGTACCCAGCTTATAGAAATCGAATCCCGGCCCCACATAACCCTTTTCTCATCGCCATTTTTGGAGCCATCAAAAGTTGAACCTTTAATCAAGTCATTTGCAGCAAAACAAGAACCCTTACTCCTGAATTTCTCCTCAATTGGGTCACTCCCAAATGAGGGTAACCTCCTTTTTCTCTCTCCTACCCCTACATTGTCTCTCCTCCAATTCCATTCCCAGCTCTGTGATCTGCTGAAGAAAGAAGGGGTTGAAATTGGGGAAGATTATCGAGTCGATTCGTGGGTGCCCGTCTGCCCGGTTGCGCAGGAGGTGCCGAAGAATCGAATGGCCGAAGCGTTTAGTGTGCTGAGGGATTTGAAGTTGCCTATTGGTGGGTATGCTATGGATATTGGGTTAGTTGAGTTTTCACCGGTGCGGGAGTTTTTCTCTTTTATTCTTGGCAACACTTTAGATGGGTAA

Protein sequence

MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPLIKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDYRVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNTLDG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo08478	Spo08478	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo08478.1	Spo08478.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08478.1.CDS.1	Spo08478.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08478.1.exon.1	Spo08478.1.exon.1	exon

Homology

[Close]

BLAST of Spo08478.1 vs. NCBI nr
Match: gi|902240014|gb|KNA25837.1| (hypothetical protein SOVF_002910 [Spinacia oleracea])

HSP 1 Score: 368.6 bits (945), Expect = 6.200e-99
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1


		  
Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL
Sbjct: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY
Sbjct: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT
Sbjct: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180

Query: 181 LDG 184
           LDG
Sbjct: 181 LDG 183

[Close]

BLAST of Spo08478.1 vs. NCBI nr
Match: gi|731376311|ref|XP_010667527.1| (PREDICTED: uncharacterized protein LOC104884549 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 340.9 bits (873), Expect = 1.400e-90
Identity = 164/183 (89.62%), Postives = 179/183 (97.81%), Query Frame = 1


		  
Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGYSIELYFDPALENQ+LKAWNVLARRQ+STQLIEIESRPHITLFSSPF++PSK+EP+
Sbjct: 1   MSQGYSIELYFDPALENQVLKAWNVLARRQLSTQLIEIESRPHITLFSSPFIDPSKLEPI 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGN-LLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGED 120
           IK+FAAKQEPL LNFSSIGSLPNEGN LLFLSPTPTLSL+QFHSQLCDLL+KEGV+IG+D
Sbjct: 61  IKNFAAKQEPLQLNFSSIGSLPNEGNNLLFLSPTPTLSLIQFHSQLCDLLRKEGVDIGDD 120

Query: 121 YRVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGN 180
           YRVDSW+PVCPVAQ+VPKNR+AEAFSVLRDLKLP+ GYAMDIGLVEFSPVREFFSFILGN
Sbjct: 121 YRVDSWIPVCPVAQDVPKNRIAEAFSVLRDLKLPVNGYAMDIGLVEFSPVREFFSFILGN 180

Query: 181 TLD 183
            LD
Sbjct: 181 NLD 183

[Close]

BLAST of Spo08478.1 vs. NCBI nr
Match: gi|147844702|emb|CAN82133.1| (hypothetical protein VITISV_002643 [Vitis vinifera])

HSP 1 Score: 317.4 bits (812), Expect = 1.600e-83
Identity = 152/182 (83.52%), Postives = 169/182 (92.86%), Query Frame = 1


		  
Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGY+IELYFDPALENQ+LKAWNVLARRQISTQLIEIESRPHITLFSSP +EP+++E +
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPLIEPARLENI 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IKSFA KQEPL L+FSSIGSLPN+ N+LFL+PTPTLSLLQFHSQLCD LKKEG+EIGE+Y
Sbjct: 61  IKSFAGKQEPLXLSFSSIGSLPNDKNVLFLAPTPTLSLLQFHSQLCDALKKEGIEIGEEY 120

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           R DSW+P CPVAQEVPK RM EAFSVLRDLKLP+ GYAMDIGLVEFSPVRE FSF+L NT
Sbjct: 121 RPDSWIPHCPVAQEVPKIRMGEAFSVLRDLKLPVTGYAMDIGLVEFSPVRELFSFVLSNT 180

Query: 181 LD 183
           L+
Sbjct: 181 LE 182

[Close]

BLAST of Spo08478.1 vs. NCBI nr
Match: gi|225452536|ref|XP_002279925.1| (PREDICTED: uncharacterized protein LOC100249281 [Vitis vinifera])

HSP 1 Score: 316.6 bits (810), Expect = 2.800e-83
Identity = 152/182 (83.52%), Postives = 169/182 (92.86%), Query Frame = 1


		  
Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGY+IELYFDPALENQ+LKAWNVLARRQISTQLIEIESRPHITLFSSP +EP+++E +
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPLIEPARLENI 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IKSFA KQEPL L+FSSIGSLPN+ N+LFL+PTPTLSLLQFHSQLCD LKKEG+EIGE+Y
Sbjct: 61  IKSFAGKQEPLPLSFSSIGSLPNDKNVLFLAPTPTLSLLQFHSQLCDALKKEGIEIGEEY 120

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           R DSW+P CPVAQEVPK RM EAFSVLRDLKLP+ GYAMDIGLVEFSPVRE FSF+L NT
Sbjct: 121 RPDSWIPHCPVAQEVPKIRMGEAFSVLRDLKLPVTGYAMDIGLVEFSPVRELFSFVLSNT 180

Query: 181 LD 183
           L+
Sbjct: 181 LE 182

[Close]

BLAST of Spo08478.1 vs. NCBI nr
Match: gi|296087705|emb|CBI34961.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 316.6 bits (810), Expect = 2.800e-83
Identity = 152/182 (83.52%), Postives = 169/182 (92.86%), Query Frame = 1


		  
Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGY+IELYFDPALENQ+LKAWNVLARRQISTQLIEIESRPHITLFSSP +EP+++E +
Sbjct: 75  MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPLIEPARLENI 134

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IKSFA KQEPL L+FSSIGSLPN+ N+LFL+PTPTLSLLQFHSQLCD LKKEG+EIGE+Y
Sbjct: 135 IKSFAGKQEPLPLSFSSIGSLPNDKNVLFLAPTPTLSLLQFHSQLCDALKKEGIEIGEEY 194

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           R DSW+P CPVAQEVPK RM EAFSVLRDLKLP+ GYAMDIGLVEFSPVRE FSF+L NT
Sbjct: 195 RPDSWIPHCPVAQEVPKIRMGEAFSVLRDLKLPVTGYAMDIGLVEFSPVRELFSFVLSNT 254

Query: 181 LD 183
           L+
Sbjct: 255 LE 256

[Close]

BLAST of Spo08478.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S3Y8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_002910 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 4.300e-99
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1


		  
Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL
Sbjct: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY
Sbjct: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT
Sbjct: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180

Query: 181 LDG 184
           LDG
Sbjct: 181 LDG 183

[Close]

BLAST of Spo08478.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B616_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_009350 PE=4 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 9.700e-91
Identity = 164/183 (89.62%), Postives = 179/183 (97.81%), Query Frame = 1


		  
Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGYSIELYFDPALENQ+LKAWNVLARRQ+STQLIEIESRPHITLFSSPF++PSK+EP+
Sbjct: 1   MSQGYSIELYFDPALENQVLKAWNVLARRQLSTQLIEIESRPHITLFSSPFIDPSKLEPI 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGN-LLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGED 120
           IK+FAAKQEPL LNFSSIGSLPNEGN LLFLSPTPTLSL+QFHSQLCDLL+KEGV+IG+D
Sbjct: 61  IKNFAAKQEPLQLNFSSIGSLPNEGNNLLFLSPTPTLSLIQFHSQLCDLLRKEGVDIGDD 120

Query: 121 YRVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGN 180
           YRVDSW+PVCPVAQ+VPKNR+AEAFSVLRDLKLP+ GYAMDIGLVEFSPVREFFSFILGN
Sbjct: 121 YRVDSWIPVCPVAQDVPKNRIAEAFSVLRDLKLPVNGYAMDIGLVEFSPVREFFSFILGN 180

Query: 181 TLD 183
            LD
Sbjct: 181 NLD 183

[Close]

BLAST of Spo08478.1 vs. UniProtKB/TrEMBL
Match: A5AGR0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002643 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 1.100e-83
Identity = 152/182 (83.52%), Postives = 169/182 (92.86%), Query Frame = 1


		  
Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGY+IELYFDPALENQ+LKAWNVLARRQISTQLIEIESRPHITLFSSP +EP+++E +
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPLIEPARLENI 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IKSFA KQEPL L+FSSIGSLPN+ N+LFL+PTPTLSLLQFHSQLCD LKKEG+EIGE+Y
Sbjct: 61  IKSFAGKQEPLXLSFSSIGSLPNDKNVLFLAPTPTLSLLQFHSQLCDALKKEGIEIGEEY 120

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           R DSW+P CPVAQEVPK RM EAFSVLRDLKLP+ GYAMDIGLVEFSPVRE FSF+L NT
Sbjct: 121 RPDSWIPHCPVAQEVPKIRMGEAFSVLRDLKLPVTGYAMDIGLVEFSPVRELFSFVLSNT 180

Query: 181 LD 183
           L+
Sbjct: 181 LE 182

[Close]

BLAST of Spo08478.1 vs. UniProtKB/TrEMBL
Match: D7TWT6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0066g01700 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 2.000e-83
Identity = 152/182 (83.52%), Postives = 169/182 (92.86%), Query Frame = 1


		  
Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGY+IELYFDPALENQ+LKAWNVLARRQISTQLIEIESRPHITLFSSP +EP+++E +
Sbjct: 75  MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPLIEPARLENI 134

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IKSFA KQEPL L+FSSIGSLPN+ N+LFL+PTPTLSLLQFHSQLCD LKKEG+EIGE+Y
Sbjct: 135 IKSFAGKQEPLPLSFSSIGSLPNDKNVLFLAPTPTLSLLQFHSQLCDALKKEGIEIGEEY 194

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           R DSW+P CPVAQEVPK RM EAFSVLRDLKLP+ GYAMDIGLVEFSPVRE FSF+L NT
Sbjct: 195 RPDSWIPHCPVAQEVPKIRMGEAFSVLRDLKLPVTGYAMDIGLVEFSPVRELFSFVLSNT 254

Query: 181 LD 183
           L+
Sbjct: 255 LE 256

[Close]

BLAST of Spo08478.1 vs. UniProtKB/TrEMBL
Match: M5X3Z2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012091mg PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 4.800e-82
Identity = 148/182 (81.32%), Postives = 170/182 (93.41%), Query Frame = 1


		  
Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MSQGY+IELYFDPALENQ+LKAWNVLARRQISTQLIEIESRPHITLFSSPF+EP+K+E +
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFIEPAKLENV 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IK+FA+KQEPL L+FSSIGSLP++ N+LFLSPTP++SLLQF SQLC+ +K+EGVEIGE+Y
Sbjct: 61  IKAFASKQEPLALSFSSIGSLPHDNNVLFLSPTPSVSLLQFQSQLCEAVKREGVEIGEEY 120

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           R DSWVP C VAQEVPK RMAEAF VLRDLKLP+ GYAMDIGLVEFSPVRE FSF+LGNT
Sbjct: 121 RTDSWVPYCAVAQEVPKTRMAEAFCVLRDLKLPVAGYAMDIGLVEFSPVRELFSFVLGNT 180

Query: 181 LD 183
           ++
Sbjct: 181 VE 182

[Close]

BLAST of Spo08478.1 vs. TAIR (Arabidopsis)
Match: AT5G40190.1 (RNA ligase/cyclic nucleotide phosphodiesterase family protein)

HSP 1 Score: 282.3 bits (721), Expect = 2.100e-76
Identity = 132/182 (72.53%), Postives = 161/182 (88.46%), Query Frame = 1


		  
Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPSKVEPL 60
           MS+GY+IELYFDPALENQ+LKAWNV ARRQIST+LI  ESRPHITLFS+ F + +++E +
Sbjct: 1   MSEGYAIELYFDPALENQVLKAWNVFARRQISTKLINTESRPHITLFSTSFFDSTRLESV 60

Query: 61  IKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGEDY 120
           IK+F +KQEP+ ++FS+IGS  ++ N+LFLSPTP+LSLLQ  +QLCD+LKKE V+IGE+Y
Sbjct: 61  IKNFVSKQEPISISFSTIGSFSSDNNVLFLSPTPSLSLLQLQTQLCDMLKKESVDIGEEY 120

Query: 121 RVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGNT 180
           RVDSWVP CPVA +VPK+RMAEAFSVLRDLKLP+ GY M+IGLVEFSPVRE FSF LGNT
Sbjct: 121 RVDSWVPFCPVALDVPKSRMAEAFSVLRDLKLPVNGYGMEIGLVEFSPVREVFSFPLGNT 180

Query: 181 LD 183
           L+
Sbjct: 181 LE 182

[Close]

BLAST of Spo08478.1 vs. TAIR (Arabidopsis)
Match: AT3G28140.1 (RNA ligase/cyclic nucleotide phosphodiesterase family protein)

HSP 1 Score: 265.0 bits (676), Expect = 3.400e-71
Identity = 130/183 (71.04%), Postives = 156/183 (85.25%), Query Frame = 1


		  
Query: 1   MSQGYSIELYFDPALENQILKAWNVLARRQISTQLIEIESRPHITLFSSPF-LEPSKVEP 60
           MSQGY+IELYFDPALENQ+LKAWNV ARRQIST LI  ESRPHITLFS+   ++ +K+EP
Sbjct: 1   MSQGYAIELYFDPALENQVLKAWNVFARRQISTYLINNESRPHITLFSTTSSIDSTKLEP 60

Query: 61  LIKSFAAKQEPLLLNFSSIGSLPNEGNLLFLSPTPTLSLLQFHSQLCDLLKKEGVEIGED 120
           +IKSF++KQEP+ L+FSSIGS  ++ N LFLSPTP+LSL+Q   QLC+++KKEG EIGE+
Sbjct: 61  IIKSFSSKQEPISLSFSSIGSFSSDDNALFLSPTPSLSLIQLQLQLCEVIKKEGFEIGEE 120

Query: 121 YRVDSWVPVCPVAQEVPKNRMAEAFSVLRDLKLPIGGYAMDIGLVEFSPVREFFSFILGN 180
           YRVDSWVP C VA +VPK+R++E F VLRDLKL + GYAMDIGLVEFSPVRE FSF LGN
Sbjct: 121 YRVDSWVPFCSVAVDVPKSRISEGFLVLRDLKLLVYGYAMDIGLVEFSPVREVFSFGLGN 180

Query: 181 TLD 183
            L+
Sbjct: 181 NLE 183

The following BLAST results are available for this feature:

BLAST of Spo08478.1 vs. NCBI nr
BLAST of Spo08478.1 vs. UniProtKB/TrEMBL
BLAST of Spo08478.1 vs. ExPASy Swiss-Prot
BLAST of Spo08478.1 vs. TAIR (Arabidopsis)

BLAST of Spo08478.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902240014\|gb\|KNA25837.1\|	6.2e-99	100.	hypothetical protein SOVF_0029...	[more]
gi\|731376311\|ref\|XP_010667527.1\|	1.4e-90	89.6	PREDICTED: uncharacterized pro...	[more]
gi\|147844702\|emb\|CAN82133.1\|	1.6e-83	83.5	hypothetical protein VITISV_00...	[more]
gi\|225452536\|ref\|XP_002279925.1\|	2.8e-83	83.5	PREDICTED: uncharacterized pro...	[more]
gi\|296087705\|emb\|CBI34961.3\|	2.8e-83	83.5	unnamed protein product [Vitis...	[more]

BLAST of Spo08478.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S3Y8_SPIOL	4.3e-99	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8B616_BETVU	9.7e-91	89.6	Uncharacterized protein OS=Bet...	[more]
A5AGR0_VITVI	1.1e-83	83.5	Putative uncharacterized prote...	[more]
D7TWT6_VITVI	2.0e-83	83.5	Putative uncharacterized prote...	[more]
M5X3Z2_PRUPE	4.8e-82	81.3	Uncharacterized protein OS=Pru...	[more]

BLAST of Spo08478.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo08478.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G40190.1	2.1e-76	72.5	RNA ligase/cyclic nucleotide p...	[more]
AT3G28140.1	3.4e-71	71.0	RNA ligase/cyclic nucleotide p...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009097	RNA ligase/cyclic nucleotide phosphodiesterase	GENE3D	3.90.1140.10		coord: 2..111 score: 4.
IPR009097	RNA ligase/cyclic nucleotide phosphodiesterase	unknown	SSF55144	LigT-like	coord: 4..133 score: 1.88
None	No IPR available	PANTHER	PTHR36039	FAMILY NOT NAMED	coord: 1..182 score: 2.7E
None	No IPR available	PANTHER	PTHR36039:SF2	GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MMG15	coord: 1..182 score: 2.7E
None	No IPR available	PFAM	PF13563	2_5_RNA_ligase2	coord: 41..154 score: 3.

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0016874	ligase activity