Spo08591.1 (mRNA)

Overview
NameSpo08591.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr2 : 31444725 .. 31446952 (-)
Sequence length1236
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGAAAGAGAAGTGAACAAAAAAACAGGCCCATTTGCCATGTCTATGTTGACAAAACAAAGATGGTCCCTCCACTGCACCCTCCCTATCTTCAATTCACCCCATATCAAATCATATATTTAAGAAACTATGTTCTTCTCTTAAATTATTCCATTAACTTAGCTACTCACTTTAAACTTTCAACCCCTTGTTTACTCAACAACCTTCAAATCTCCATTACTTTCAATAAGCTACTTAATATCATCACATACATAATAATCATACATACAATATGAGGCCTTCTTCATTTATATTATTCGTCCTTCTTCTTGTCTTGCATATTCATCTTCTACGCGGAGCTTATGGTATGTCGTATATCGCGATTACTTCCTCTTATTACAATAATAATAATAATAATAATATGATTCCAAATACATCCCAGTTATGAATTTTATGTTCGAGTACTAATTGACGAGTAATTTTTTTATGATTTTTTGTAGGTTCTCGTCTTGGTAAATTTGCTCTGAAACCGGCTTCTTATGATGATGCTCAACCTACCAAATTGGTACGTATCCATACTACATATTTCTGAAATAATTGAAAATAAGGAGAATAGAATAAAGTCTTAATTAAGAAATGTATATTAATTAATTAATTAAACATCTGTTTGTGATAATTCAATTCTTGCAGGAGAATGAAAATGCTTTGAAGAAATCGGATGATGATCATAGTAATAATAATGTTGATAAAAAGGAAATATTATCAATTGATGAAGAAGTTAACTGTAAAGATGGCGAAGATAATTGTTCATCAAAAGGTACTTTGAAGAGAAGAGTCATCAAAGAATACTCTAATAATTATCATCATCGTCGTCGTCATCATCATCATCATCATCATCCTCATCATCATAATCAGTGGTTTTCATGGATTCATGAAGATTACCGTGGACCTTACAGACATCGCCCTAGGCACCACTAGATTACATTTTTTTACCTATACTTCAAATTTCATCTCCTTTTTTTTTTTTTTTATCTTAGGTCATTGGTTAGTTTTAGGCCTTTTATGGGATTAATATCAGATTAATTTTTTTTAGAGGTAGCTTAGCTAGCTTAATTATCTTAGCTAGCTAGCTTAATTAGCTAGCTTAATTAGCCATGACATTACATGTAACGTACTCCAACTCCATCCATCTTCAAGGAAGTCTTGAAGTATTAGTAGCATTCTTTTTTAAGTACTTAGGACGTAGTAACATTCTTTTTGAAGTACGTAGTAGCATTTTTTTTAAGCGGTATGATTAATTACGTACCTACTTATAAATTTTTACTTAATTCTCGATATTTAAGTAGGTTCATTTTATCTATTTTTGCAGGAAAGTATAGAAAATTAATTATCTCAACCACCATCCCAACTTCCTCCGCTAAACCCTTCCAAGAGGTTGGTACTAACATTTTTTTTAGCACCCCATCGGTATGGCCGACCTCTATTTTGTTAAGAGGCGGGTCGTCATCGGTCTAACACAATATATTGTACCATTCACATGGTACAAAACCACGTAAAAAATGGTCATATAATGATAAAAATGATTTTAATTATGTTGAATTAATTAATGTACAGATTCTGGACCACGGAGGGGGAAAAATGGGCATCATGAAAAGAGATAACAAAGCTCAAACATTATTATCAATTCATGAAAATCCACCGACGGCGTTTGATGTTGATAAGCACAAGGAATTCGAGAACGCAATGGACATGACTGTAATGGACTACTCCCCGGCGAAGAGAAAGTCTCCAATTCACAATTAATTAAGGAAAATACATGCATACGTACGGAGTAATCGTAATTAATATAATAGAGGATACAATTATGAGCATATATGATATCCTCTGTTAATTAAATAGCGGTAGCAATGCAATAGAATAGTGCGTAGAGCACAATAGGGGCAGGGAGATTGGGAGAACAATTAAGTGGGAAATAGAAGATCAAACACCATTACAGAAATGCTGCACTCTTTTTAGGGTTTTAACTACCTTATTAGGGATTATATTTGTATATATATAATTAGCTGATATTATACACCATATAAAAATAGTACGAAGTATAATTTCATGAATAAAGTAGTTAGGTTTTATTTTATTTTTCTCATACAAGACATATGATTGACTCATGATTATAGGATTATATTTAATTACCATGTAAAGTGTCAGATTTCACCATTGTTGGATGAAAATCTGTTAGAAGAAATTGAGAG

mRNA sequence

AAGGAAAGAGAAGTGAACAAAAAAACAGGCCCATTTGCCATGTCTATGTTGACAAAACAAAGATGGTCCCTCCACTGCACCCTCCCTATCTTCAATTCACCCCATATCAAATCATATATTTAAGAAACTATGTTCTTCTCTTAAATTATTCCATTAACTTAGCTACTCACTTTAAACTTTCAACCCCTTGTTTACTCAACAACCTTCAAATCTCCATTACTTTCAATAAGCTACTTAATATCATCACATACATAATAATCATACATACAATATGAGGCCTTCTTCATTTATATTATTCGTCCTTCTTCTTGTCTTGCATATTCATCTTCTACGCGGAGCTTATGGTTCTCGTCTTGGTAAATTTGCTCTGAAACCGGCTTCTTATGATGATGCTCAACCTACCAAATTGGAGAATGAAAATGCTTTGAAGAAATCGGATGATGATCATAGTAATAATAATGTTGATAAAAAGGAAATATTATCAATTGATGAAGAAGTTAACTGTAAAGATGGCGAAGATAATTGTTCATCAAAAGGAAAGTATAGAAAATTAATTATCTCAACCACCATCCCAACTTCCTCCGCTAAACCCTTCCAAGAGATTCTGGACCACGGAGGGGGAAAAATGGGCATCATGAAAAGAGATAACAAAGCTCAAACATTATTATCAATTCATGAAAATCCACCGACGGCGTTTGATGTTGATAAGCACAAGGAATTCGAGAACGCAATGGACATGACTGTAATGGACTACTCCCCGGCGAAGAGAAAGTCTCCAATTCACAATTAATTAAGGAAAATACATGCATACGTACGGAGTAATCGTAATTAATATAATAGAGGATACAATTATGAGCATATATGATATCCTCTGTTAATTAAATAGCGGTAGCAATGCAATAGAATAGTGCGTAGAGCACAATAGGGGCAGGGAGATTGGGAGAACAATTAAGTGGGAAATAGAAGATCAAACACCATTACAGAAATGCTGCACTCTTTTTAGGGTTTTAACTACCTTATTAGGGATTATATTTGTATATATATAATTAGCTGATATTATACACCATATAAAAATAGTACGAAGTATAATTTCATGAATAAAGTAGTTAGGTTTTATTTTATTTTTCTCATACAAGACATATGATTGACTCATGATTATAGGATTATATTTAATTACCATGTAAAGTGTCAGATTTCACCATTGTTGGATGAAAATCTGTTAGAAGAAATTGAGAG

Coding sequence (CDS)

ATGAGGCCTTCTTCATTTATATTATTCGTCCTTCTTCTTGTCTTGCATATTCATCTTCTACGCGGAGCTTATGGTTCTCGTCTTGGTAAATTTGCTCTGAAACCGGCTTCTTATGATGATGCTCAACCTACCAAATTGGAGAATGAAAATGCTTTGAAGAAATCGGATGATGATCATAGTAATAATAATGTTGATAAAAAGGAAATATTATCAATTGATGAAGAAGTTAACTGTAAAGATGGCGAAGATAATTGTTCATCAAAAGGAAAGTATAGAAAATTAATTATCTCAACCACCATCCCAACTTCCTCCGCTAAACCCTTCCAAGAGATTCTGGACCACGGAGGGGGAAAAATGGGCATCATGAAAAGAGATAACAAAGCTCAAACATTATTATCAATTCATGAAAATCCACCGACGGCGTTTGATGTTGATAAGCACAAGGAATTCGAGAACGCAATGGACATGACTGTAATGGACTACTCCCCGGCGAAGAGAAAGTCTCCAATTCACAATTAA

Protein sequence

MRPSSFILFVLLLVLHIHLLRGAYGSRLGKFALKPASYDDAQPTKLENENALKKSDDDHSNNNVDKKEILSIDEEVNCKDGEDNCSSKGKYRKLIISTTIPTSSAKPFQEILDHGGGKMGIMKRDNKAQTLLSIHENPPTAFDVDKHKEFENAMDMTVMDYSPAKRKSPIHN
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo08591Spo08591gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo08591.1Spo08591.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08591.1.utr5p.1Spo08591.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08591.1.CDS.5Spo08591.1.CDS.5CDS
Spo08591.1.CDS.4Spo08591.1.CDS.4CDS
Spo08591.1.CDS.3Spo08591.1.CDS.3CDS
Spo08591.1.CDS.2Spo08591.1.CDS.2CDS
Spo08591.1.CDS.1Spo08591.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08591.1.utr3p.1Spo08591.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo08591.1.exon.5Spo08591.1.exon.5exon
Spo08591.1.exon.4Spo08591.1.exon.4exon
Spo08591.1.exon.3Spo08591.1.exon.3exon
Spo08591.1.exon.2Spo08591.1.exon.2exon
Spo08591.1.exon.1Spo08591.1.exon.1exon


Homology
[Close]
BLAST of Spo08591.1 vs. NCBI nr
Match: gi|902179080|gb|KNA09283.1| (hypothetical protein SOVF_155020 [Spinacia oleracea])

HSP 1 Score: 336.7 bits (862), Expect = 2.500e-89
Identity = 169/172 (98.26%), Postives = 170/172 (98.84%), Query Frame = 1 

		  

Query: 1   MRPSSFILFVLLLVLHIHLLRGAYGSRLGKFALKPASYDDAQPTKLENENALKKSDDDHS 60
           MRPSSFILFVLLLVLHIHLLRGAYGSRLGKFALKPASYDDAQPT LENENALKKSDDDHS
Sbjct: 1   MRPSSFILFVLLLVLHIHLLRGAYGSRLGKFALKPASYDDAQPTNLENENALKKSDDDHS 60

Query: 61  NNNVDKKEILSIDEEVNCKDGEDNCSSKGKYRKLIISTTIPTSSAKPFQEILDHGGGKMG 120
           NNNVDKKEILSIDEEVNCKDGEDNCSSKGKYRKLIISTTIPTSSAKPFQ+ILDHGG KMG
Sbjct: 61  NNNVDKKEILSIDEEVNCKDGEDNCSSKGKYRKLIISTTIPTSSAKPFQKILDHGGEKMG 120

Query: 121 IMKRDNKAQTLLSIHENPPTAFDVDKHKEFENAMDMTVMDYSPAKRKSPIHN 173
           IMKRDNKAQTLLSIHENPPTAFDVDKHKEFENAMDMTVMDYSPAKRKSPIHN
Sbjct: 121 IMKRDNKAQTLLSIHENPPTAFDVDKHKEFENAMDMTVMDYSPAKRKSPIHN 172
[Close]
BLAST of Spo08591.1 vs. NCBI nr
Match: gi|731352885|ref|XP_010687774.1| (PREDICTED: uncharacterized protein LOC104901845 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 146.4 bits (368), Expect = 4.700e-32
Identity = 95/181 (52.49%), Postives = 118/181 (65.19%), Query Frame = 1 

		  

Query: 1   MRPSSFILFVLLLVLHIHLLRGAYGSRLGKFALKPASYDDAQPTKLENENALKKSDDDHS 60
           MRPSS ++F  LLVLH+ +L GAYG+RLGKF  K     D Q T +E E  ++K  D   
Sbjct: 1   MRPSSLLVF--LLVLHL-MLCGAYGARLGKFDTKSTDASD-QLTNVEIEYTVEKL-DHQK 60

Query: 61  NNNVDKKEILSIDEEVNCKDGEDNCSSKGKYRKLIISTTIPTSSAKPFQEILDHGGGKMG 120
           N+N+ K+EI+    EV C+D E +CS+KGK RKLI STT+P S AKP QE L+ G  KM 
Sbjct: 61  NDNLHKREIII---EVKCEDDEGHCSTKGKNRKLITSTTMPNSIAKPIQENLEKGEKKMK 120

Query: 121 I---MKRDNKAQTLLSIHEN-PPTAFDVDKHK-----EFENAMDMTVMDYSPAKRKSPIH 173
               +   + + +  S+H N P T F VDKHK     E+ENAMDMTVMDYSPAKRK PIH
Sbjct: 121 AHPKLSSSSSSSSSSSLHHNDPSTGFRVDKHKEITPPEYENAMDMTVMDYSPAKRKPPIH 173
[Close]
BLAST of Spo08591.1 vs. NCBI nr
Match: gi|870851564|gb|KMT03611.1| (hypothetical protein BVRB_8g192840 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 118.2 bits (295), Expect = 1.400e-23
Identity = 84/178 (47.19%), Postives = 109/178 (61.24%), Query Frame = 1 

		  

Query: 1   MRPSSFILFVLLLVLHIHLLRGAYGSRLGKFALKPASYDDAQPTKLENENALKKSDDDHS 60
           MRPSS ++F  LLVLH+ +L GAYG+RLGKF  K     D Q T +E E  ++K  D   
Sbjct: 1   MRPSSLLVF--LLVLHL-MLCGAYGARLGKFDTKSTDASD-QLTNVEIEYTVEKL-DHQK 60

Query: 61  NNNVDKKEILSIDEEVNCKDGEDNCSSKGKYRKLIISTTIPTSSAKPFQEILDHGGGKMG 120
           N+N+ K+EI+    EV C+D E +CS+KGK RKLI STT+P S AKP QE L+ G  KM 
Sbjct: 61  NDNLHKREIII---EVKCEDDEGHCSTKGKNRKLITSTTMPNSIAKPIQENLEKGEKKMK 120

Query: 121 I---MKRDNKAQTLLSIHEN-PPTAFDVDKHK-----EFENAMDMT--VMDYSPAKRK 168
               +   + + +  S+H N P T F VDKHK     E+ENAMDMT   M Y   ++K
Sbjct: 121 AHPKLSSSSSSSSSSSLHHNDPSTGFRVDKHKEITPPEYENAMDMTKIYMKYMHGRKK 170
[Close]
BLAST of Spo08591.1 vs. NCBI nr
Match: gi|698571607|ref|XP_009774919.1| (PREDICTED: uncharacterized protein LOC104224898 isoform X2 [Nicotiana sylvestris])

HSP 1 Score: 60.5 bits (145), Expect = 3.400e-6
Identity = 41/137 (29.93%), Postives = 69/137 (50.36%), Query Frame = 1 

		  

Query: 52  LKKSDDDHSNNNVDKKEILS------IDEEVNCKDGEDNCSSKGKYRKLIISTTIPTSSA 111
           LKK +   S N + ++ +L         E + CKDG  +CSS G+ RKL+  TT  +S  
Sbjct: 24  LKKGNLSSSKNPILQENVLKERSEGGTGEVILCKDG--HCSSSGRNRKLMTKTTSTSSPT 83

Query: 112 KPFQEILDHGGGKMG---IMKRDNKAQTLL-------SIHENPPTAFDVDKHKEFENAMD 171
               + + +  G  G   ++K  + ++ ++       S++ +P T       + + + +D
Sbjct: 84  TTSTKNIKNNEGNKGDHTVLKGQSSSERVIGGKEENFSVNSSPETGHRKTSSEHYPDVLD 143

Query: 172 MTVMDYSPAKRKSPIHN 173
           +  MDYSPAKRK PIHN
Sbjct: 144 LAGMDYSPAKRKPPIHN 158
[Close]
BLAST of Spo08591.1 vs. NCBI nr
Match: gi|697105926|ref|XP_009606793.1| (PREDICTED: uncharacterized protein LOC104101086 isoform X2 [Nicotiana tomentosiformis])

HSP 1 Score: 59.7 bits (143), Expect = 5.800e-6
Identity = 41/137 (29.93%), Postives = 69/137 (50.36%), Query Frame = 1 

		  

Query: 52  LKKSDDDHSNNNVDKKEILS------IDEEVNCKDGEDNCSSKGKYRKLIISTTIPTSSA 111
           LKK +   S N + ++ +L         E + CKDG  +CSS G+ RKL+  TT  +S  
Sbjct: 24  LKKGNLSSSKNPILQENVLKERSEGGTGEVILCKDG--HCSSSGRNRKLMTKTTSTSSPT 83

Query: 112 KPFQEILDHGGGKMG---IMKRDNKAQTLL-------SIHENPPTAFDVDKHKEFENAMD 171
               + + +  G  G   ++K  + ++ ++       S++ +P T       + + + +D
Sbjct: 84  TTSTKNIKNNEGNKGDHTVLKGQSSSERVIGGKEENSSVNSSPETGHWKTSSEHYPDVLD 143

Query: 172 MTVMDYSPAKRKSPIHN 173
           +  MDYSPAKRK PIHN
Sbjct: 144 LAGMDYSPAKRKPPIHN 158
[Close]
BLAST of Spo08591.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QRI0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_155020 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 1.700e-89
Identity = 169/172 (98.26%), Postives = 170/172 (98.84%), Query Frame = 1 

		  

Query: 1   MRPSSFILFVLLLVLHIHLLRGAYGSRLGKFALKPASYDDAQPTKLENENALKKSDDDHS 60
           MRPSSFILFVLLLVLHIHLLRGAYGSRLGKFALKPASYDDAQPT LENENALKKSDDDHS
Sbjct: 1   MRPSSFILFVLLLVLHIHLLRGAYGSRLGKFALKPASYDDAQPTNLENENALKKSDDDHS 60

Query: 61  NNNVDKKEILSIDEEVNCKDGEDNCSSKGKYRKLIISTTIPTSSAKPFQEILDHGGGKMG 120
           NNNVDKKEILSIDEEVNCKDGEDNCSSKGKYRKLIISTTIPTSSAKPFQ+ILDHGG KMG
Sbjct: 61  NNNVDKKEILSIDEEVNCKDGEDNCSSKGKYRKLIISTTIPTSSAKPFQKILDHGGEKMG 120

Query: 121 IMKRDNKAQTLLSIHENPPTAFDVDKHKEFENAMDMTVMDYSPAKRKSPIHN 173
           IMKRDNKAQTLLSIHENPPTAFDVDKHKEFENAMDMTVMDYSPAKRKSPIHN
Sbjct: 121 IMKRDNKAQTLLSIHENPPTAFDVDKHKEFENAMDMTVMDYSPAKRKSPIHN 172
[Close]
BLAST of Spo08591.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EKX5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g192840 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 9.600e-24
Identity = 84/178 (47.19%), Postives = 109/178 (61.24%), Query Frame = 1 

		  

Query: 1   MRPSSFILFVLLLVLHIHLLRGAYGSRLGKFALKPASYDDAQPTKLENENALKKSDDDHS 60
           MRPSS ++F  LLVLH+ +L GAYG+RLGKF  K     D Q T +E E  ++K  D   
Sbjct: 1   MRPSSLLVF--LLVLHL-MLCGAYGARLGKFDTKSTDASD-QLTNVEIEYTVEKL-DHQK 60

Query: 61  NNNVDKKEILSIDEEVNCKDGEDNCSSKGKYRKLIISTTIPTSSAKPFQEILDHGGGKMG 120
           N+N+ K+EI+    EV C+D E +CS+KGK RKLI STT+P S AKP QE L+ G  KM 
Sbjct: 61  NDNLHKREIII---EVKCEDDEGHCSTKGKNRKLITSTTMPNSIAKPIQENLEKGEKKMK 120

Query: 121 I---MKRDNKAQTLLSIHEN-PPTAFDVDKHK-----EFENAMDMT--VMDYSPAKRK 168
               +   + + +  S+H N P T F VDKHK     E+ENAMDMT   M Y   ++K
Sbjct: 121 AHPKLSSSSSSSSSSSLHHNDPSTGFRVDKHKEITPPEYENAMDMTKIYMKYMHGRKK 170
The following BLAST results are available for this feature:
BLAST of Spo08591.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902179080|gb|KNA09283.1|2.5e-8998.2hypothetical protein SOVF_1550... [more]
gi|731352885|ref|XP_010687774.1|4.7e-3252.4PREDICTED: uncharacterized pro... [more]
gi|870851564|gb|KMT03611.1|1.4e-2347.1hypothetical protein BVRB_8g19... [more]
gi|698571607|ref|XP_009774919.1|3.4e-629.9PREDICTED: uncharacterized pro... [more]
gi|697105926|ref|XP_009606793.1|5.8e-629.9PREDICTED: uncharacterized pro... [more]
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BLAST of Spo08591.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9QRI0_SPIOL1.7e-8998.2Uncharacterized protein OS=Spi... [more]
A0A0J8EKX5_BETVU9.6e-2447.1Uncharacterized protein OS=Bet... [more]
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BLAST of Spo08591.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo08591.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33743FAMILY NOT NAMEDcoord: 149..172
score: 5.7
NoneNo IPR availablePANTHERPTHR33743:SF5SUBFAMILY NOT NAMEDcoord: 149..172
score: 5.7