Spo08741.1 (mRNA) | SpinachBase

Overview


Name	Spo08741.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr3 : 113305201 .. 113307597 (+)
Sequence length	1132

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAACAGCGAAAAATTTCCTTAAGGCACCTTCACCGTACTTCATTCCTCCCTCTGCTCCTTCACCGTAATTCATCACATCGCTGGCGCCGCTCCCTCCTCCCTCTCCTCCTTCACCGTCGCTGGCCGCTGCTCCCTCCTCCATCTCCTCCTTCACTGTCGCTTGCCGCTGCTCCCTCCTCCCTCTGCTCCTTCACCGTCTAACCGTCTTTTTGTTGCAAATTCGCCTGGCCAAATTGTTTTCTTCCTACCACTACAGCTCTAAACAGAAGTAGAGGCAAAAGCAGAAGAAGCTTAATCAATGGATAGTTGCTTCAGGACTTCAATTTGCCGCCAAATGCGCCGGAAGATGCTCGTGTTCGGTGGCGGAAAGCCGTCGGATCACTCATTCTCAATCGCCGTCGTCGTTTCCGTTATGTTACTAATCTTAAAAAACGCTCTCAAGATGCCAAAACTCTTCAGGTTCTTTCTAACTTATGGTTGACTTTCTGTTCCTTTTGCCGACGAATTTCTCCTAGTCGGTTTAGGATTTTGGAATTGGGGATTTTTGGAAATTAGGGTTCATGACATTGGGACGAATTGGGTTGGTGTTCGATTTGAGTATTATTGTGTGGTTTTGGTGTTTGATTGAGATAATTAGTTTACTTGATCAGTAGGGTTTATTGTCAATTACTGTTGATTGTATTGAATTGTTTATGGTTGGTTTATTGTCGAGTTATCCATATTCATTAGCATTTGTAGGATCATTTGATGCATTATAGAAAAAACAAACACATTTTACATACTTAACCTTAAATGTAATATCAACCATTCAAAAGTGTCAATACAGAATATGGATTTCTTTACAGGTTATCACTAAAGAATGAAATAGTTTGCGCTTTTCAATCCCAAATCATTAGCAGTTAAGGAGTATAAGTAGAAGAAATAGGGAAGATGAAGTTTCTTGGCATATGCAATCAGGATTTGGTGTTGTTTTCTCTCACTACCATTTCTTCTTTCGGGGTAGCAACGCTAATATGTCATCTAGTTTATGAGAAAACATGAAAAATCTTCTAGGAATGGTTCTTTGCTAGGAGGAATATGAACTGTGAAGAAATATCCTAAAAAGTTTATTACTTCGGTATACTATGAGAATATCTTATTCCTTTATGAATAGTTGAATAGAACTAGTACTTCATAGTTGATAGTTTATGTTGGGTGGGGTCCCGACAAAGCTGTTTCGTACCTCGAATCTTTTCTTCAGAGTAGAAGACATACCTTGAGTGTGGTGGTCTGCATGCTCTCACATTTCCTGCTGGAGAACTCCTGCGAATTACAGTTTGATAGATGTTGGTGAATACATTGCATAGAAAGTTGGTTGATCTGTTCTTCCAAAACCGGAGATAGCTAGCTTGTTGCATATGGTAAATTAACTTGGGATGAAAAAGTGGGAATTTTCCTCTATATTGATAGTAAGAGTCTGAGGTTAATAGTTTCTTTGACTTTTGTTGTTATGAGTCAGATTGATCTGAGTTTTTCTAGAAAAGAGGTGTGATGTGAAAACATTATTATTACATTGCTGGTGAGTCAGATTGATCTGAATTGATTTTATGAGTCAGATTGATCTGAATTGATTTTATGAGTCAGATTGATCTGAATTGATTAATGTTTTGACGAGGAAAGATAAACTTCACGGTATTGGGGGGTATTTCTAAATTTTTAATTTATTCATGTGGTATTTGATTCAGGTGTTCATGTTTCTTGCTGGAGATTTTGATCTCGATAATGCTGGAGGTTTGATGAGATGGTTGCTGGTTGCTGAAAGACGTGCATTTGACTACTTGTGCATTTGACTACTTGATCATAAGTTGTACTCGGGTGTTGTTTCAGTTATTCAGTTCCACTTCTTGGTCTTGTACATTTTGATCTTTTCATCCGGGTAGCTCATTCAGAATTAGGTGAATTTATCCTTTCTTATTGGACTAGGTACTTCAATTTGACTGTTGATGTTTTAATTCATGGAAATTCTCTCTTGATTAGTGTAGACACCTAATTTGTGCCCCTCTGGGATGATGACGATACCATTATCCTTACTAGGCGGTTGGAGCAACTCCATGCGGAAATCCCAATTGCTAAGAACATCTCCAAAATACAAGATCCAAAATCCAATCCCCGAGGCCATTCCCCTTCCAGAACTCGGTACAAAATTTAATTTTCAAAAAACAATTTCAAAATCCAAGTACAATCTCATCTAGTGGACCATTCCATTGGTTTTACTAAGCCTTTTCAACTCAAAATCATATAAGGCAAGTCAAATTCGGGCGCAGACCCACAAAACCGAGCAAGCCGGGCCCCGTCCCGAACAACCGGAATTCAAAACCCGAAACGACTTGTTTTTAGACGTAAAATCAAGTCTAA

mRNA sequence

AATAAACAGCGAAAAATTTCCTTAAGGCACCTTCACCGTACTTCATTCCTCCCTCTGCTCCTTCACCGTAATTCATCACATCGCTGGCGCCGCTCCCTCCTCCCTCTCCTCCTTCACCGTCGCTGGCCGCTGCTCCCTCCTCCATCTCCTCCTTCACTGTCGCTTGCCGCTGCTCCCTCCTCCCTCTGCTCCTTCACCGTCTAACCGTCTTTTTGTTGCAAATTCGCCTGGCCAAATTGTTTTCTTCCTACCACTACAGCTCTAAACAGAAGTAGAGGCAAAAGCAGAAGAAGCTTAATCAATGGATAGTTGCTTCAGGACTTCAATTTGCCGCCAAATGCGCCGGAAGATGCTCGTGTTCGGTGGCGGAAAGCCGTCGGATCACTCATTCTCAATCGCCGTCGTCGTTTCCGTTATGTTACTAATCTTAAAAAACGCTCTCAAGATGCCAAAACTCTTCAGGTGTTCATGTTTCTTGCTGGAGATTTTGATCTCGATAATGCTGGAGGTTTGATGAGATGGTTGCTGGTTGCTGAAAGACGTGCATTTGACTACTTGTGCATTTGACTACTTGATCATAAGTTGTACTCGGGTGTTGTTTCAGTTATTCAGTTCCACTTCTTGGTCTTGTACATTTTGATCTTTTCATCCGGGTAGCTCATTCAGAATTAGGTGAATTTATCCTTTCTTATTGGACTAGGTACTTCAATTTGACTGTTGATGTTTTAATTCATGGAAATTCTCTCTTGATTAGTGTAGACACCTAATTTGTGCCCCTCTGGGATGATGACGATACCATTATCCTTACTAGGCGGTTGGAGCAACTCCATGCGGAAATCCCAATTGCTAAGAACATCTCCAAAATACAAGATCCAAAATCCAATCCCCGAGGCCATTCCCCTTCCAGAACTCGGTACAAAATTTAATTTTCAAAAAACAATTTCAAAATCCAAGTACAATCTCATCTAGTGGACCATTCCATTGGTTTTACTAAGCCTTTTCAACTCAAAATCATATAAGGCAAGTCAAATTCGGGCGCAGACCCACAAAACCGAGCAAGCCGGGCCCCGTCCCGAACAACCGGAATTCAAAACCCGAAACGACTTGTTTTTAGACGTAAAATCAAGTCTAA

Coding sequence (CDS)

ATGGATAGTTGCTTCAGGACTTCAATTTGCCGCCAAATGCGCCGGAAGATGCTCGTGTTCGGTGGCGGAAAGCCGTCGGATCACTCATTCTCAATCGCCGTCGTCGTTTCCGTTATGTTACTAATCTTAAAAAACGCTCTCAAGATGCCAAAACTCTTCAGGTGTTCATGTTTCTTGCTGGAGATTTTGATCTCGATAATGCTGGAGGTTTGA

Protein sequence

MDSCFRTSICRQMRRKMLVFGGGKPSDHSFSIAVVVSVMLLILKNALKMPKLFRCSCFLLEILISIMLEV

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo08741	Spo08741	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo08741.1	Spo08741.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08741.1.exon.1	Spo08741.1.exon.1	exon
Spo08741.1.exon.2	Spo08741.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08741.1.utr5p.1	Spo08741.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08741.1.CDS.1	Spo08741.1.CDS.1	CDS
Spo08741.1.CDS.2	Spo08741.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08741.1.utr3p.1	Spo08741.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo08741.1 vs. NCBI nr
Match: gi|902234966|gb|KNA23666.1| (hypothetical protein SOVF_022810, partial [Spinacia oleracea])

HSP 1 Score: 107.8 bits (268), Expect = 7.600e-21
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1

		  
Query: 1  MDSCFRTSICRQMRRKMLVFGGGKPSDHSFSIAVVVSVMLLILKNALKMPKLF 54
          MDSCFRTSICRQMRRKMLVFGGGKPSDHSFSIAVVVSVMLLILKNALKMPKLF
Sbjct: 1  MDSCFRTSICRQMRRKMLVFGGGKPSDHSFSIAVVVSVMLLILKNALKMPKLF 53

[Close]

BLAST of Spo08741.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVW7_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_022810 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.300e-21
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1

		  
Query: 1  MDSCFRTSICRQMRRKMLVFGGGKPSDHSFSIAVVVSVMLLILKNALKMPKLF 54
          MDSCFRTSICRQMRRKMLVFGGGKPSDHSFSIAVVVSVMLLILKNALKMPKLF
Sbjct: 1  MDSCFRTSICRQMRRKMLVFGGGKPSDHSFSIAVVVSVMLLILKNALKMPKLF 53

The following BLAST results are available for this feature:

BLAST of Spo08741.1 vs. NCBI nr
BLAST of Spo08741.1 vs. UniProtKB/TrEMBL
BLAST of Spo08741.1 vs. ExPASy Swiss-Prot
BLAST of Spo08741.1 vs. TAIR (Arabidopsis)

BLAST of Spo08741.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902234966\|gb\|KNA23666.1\|	7.6e-21	100.	hypothetical protein SOVF_0228...	[more]

BLAST of Spo08741.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RVW7_SPIOL	5.3e-21	100.	Uncharacterized protein (Fragm...	[more]

BLAST of Spo08741.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo08741.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description