Spo08811.1 (mRNA) | SpinachBase

Overview


Name	Spo08811.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr1 : 43104789 .. 43105364 (-)
Sequence length	576

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAACAACAACATCCTCCATAGCAATTCAAATCCCCAAATACCACTTCATCATCCGATCATCATCTTCAAAACCCACCTCAGTACCTGTTTCCCAGAAACCCTCTAATAAACCAGAAAACTCGTTGTCTTTCGCCAGAAACTTGGCTGTAGCTACCACAATCTTGTCACCCCTAGCCTCTTCCCCATTAGCCTTAGCAGCAAAGCAAATAGCCGAGTCACCACAGGAAGATAACCGAGGTCTCCTCCTTCTGGTGCCTGTTGCAGCTGCATTAGGATGGGTGGTTTTCAACATCTTTGGTCCTGCATTGAACCAGATCAACAAAATGAGGAGCGATACGAATGTGACCGTCGTTGGACTCGGGCTTGGTGGGTTGTTAACTGCAGCTGCGTCTAGTGCTGTGTTTGCGCCGATTGCTTCAGCTGCAAGTGAAGTTGTTGAAGGTGAGGTCGTTGCCGCTTCAGGAGGTGTTCCGCTTCCGTTGATTGTGGCTGGTTGTGTGGCTTTACAGGTGGTGTTGTTCAGTACTATGCAATCAAAGTATGAGAAAGAGGGGGGTGCTAGTCATTAA

mRNA sequence

ATGGCTGCAACAACAACATCCTCCATAGCAATTCAAATCCCCAAATACCACTTCATCATCCGATCATCATCTTCAAAACCCACCTCAGTACCTGTTTCCCAGAAACCCTCTAATAAACCAGAAAACTCGTTGTCTTTCGCCAGAAACTTGGCTGTAGCTACCACAATCTTGTCACCCCTAGCCTCTTCCCCATTAGCCTTAGCAGCAAAGCAAATAGCCGAGTCACCACAGGAAGATAACCGAGGTCTCCTCCTTCTGGTGCCTGTTGCAGCTGCATTAGGATGGGTGGTTTTCAACATCTTTGGTCCTGCATTGAACCAGATCAACAAAATGAGGAGCGATACGAATGTGACCGTCGTTGGACTCGGGCTTGGTGGGTTGTTAACTGCAGCTGCGTCTAGTGCTGTGTTTGCGCCGATTGCTTCAGCTGCAAGTGAAGTTGTTGAAGGTGAGGTCGTTGCCGCTTCAGGAGGTGTTCCGCTTCCGTTGATTGTGGCTGGTTGTGTGGCTTTACAGGTGGTGTTGTTCAGTACTATGCAATCAAAGTATGAGAAAGAGGGGGGTGCTAGTCATTAA

Coding sequence (CDS)

ATGGCTGCAACAACAACATCCTCCATAGCAATTCAAATCCCCAAATACCACTTCATCATCCGATCATCATCTTCAAAACCCACCTCAGTACCTGTTTCCCAGAAACCCTCTAATAAACCAGAAAACTCGTTGTCTTTCGCCAGAAACTTGGCTGTAGCTACCACAATCTTGTCACCCCTAGCCTCTTCCCCATTAGCCTTAGCAGCAAAGCAAATAGCCGAGTCACCACAGGAAGATAACCGAGGTCTCCTCCTTCTGGTGCCTGTTGCAGCTGCATTAGGATGGGTGGTTTTCAACATCTTTGGTCCTGCATTGAACCAGATCAACAAAATGAGGAGCGATACGAATGTGACCGTCGTTGGACTCGGGCTTGGTGGGTTGTTAACTGCAGCTGCGTCTAGTGCTGTGTTTGCGCCGATTGCTTCAGCTGCAAGTGAAGTTGTTGAAGGTGAGGTCGTTGCCGCTTCAGGAGGTGTTCCGCTTCCGTTGATTGTGGCTGGTTGTGTGGCTTTACAGGTGGTGTTGTTCAGTACTATGCAATCAAAGTATGAGAAAGAGGGGGGTGCTAGTCATTAA

Protein sequence

MAATTTSSIAIQIPKYHFIIRSSSSKPTSVPVSQKPSNKPENSLSFARNLAVATTILSPLASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTVVGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFSTMQSKYEKEGGASH

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo08811	Spo08811	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo08811.1	Spo08811.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08811.1.CDS.1	Spo08811.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo08811.1.exon.1	Spo08811.1.exon.1	exon

Homology

[Close]

BLAST of Spo08811.1 vs. NCBI nr
Match: gi|902155686|gb|KNA05935.1| (hypothetical protein SOVF_185730 [Spinacia oleracea])

HSP 1 Score: 348.2 bits (892), Expect = 9.100e-93
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1


		  
Query: 1   MAATTTSSIAIQIPKYHFIIRSSSSKPTSVPVSQKPSNKPENSLSFARNLAVATTILSPL 60
           MAATTTSSIAIQIPKYHFIIRSSSSKPTSVPVSQKPSNKPENSLSFARNLAVATTILSPL
Sbjct: 1   MAATTTSSIAIQIPKYHFIIRSSSSKPTSVPVSQKPSNKPENSLSFARNLAVATTILSPL 60

Query: 61  ASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTVV 120
           ASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTVV
Sbjct: 61  ASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTVV 120

Query: 121 GLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFSTMQ 180
           GLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFSTMQ
Sbjct: 121 GLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFSTMQ 180

Query: 181 SKYEKEGGASH 192
           SKYEKEGGASH
Sbjct: 181 SKYEKEGGASH 191

[Close]

BLAST of Spo08811.1 vs. NCBI nr
Match: gi|731368103|ref|XP_010695963.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 203.0 bits (515), Expect = 4.700e-49
Identity = 127/186 (68.28%), Postives = 146/186 (78.49%), Query Frame = 1


		  
Query: 3   ATTTSSIAIQIPKYHFIIRSSSS-KPTSVPVSQ--KPSNKPENSLSFARNLAVATTILSP 62
           A TT S  I  PKYHFII SSSS KP+S+PVSQ  KPS+KP  S S A+ LA+A+T LSP
Sbjct: 2   AATTFSTTIHNPKYHFIISSSSSSKPSSLPVSQPLKPSSKPGKSWSLAKTLALASTALSP 61

Query: 63  LASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTV 122
           LASSP+ALAAKQIAESPQEDNRGL LLVPVAAA+GWV++NI GPALNQINKMRS+  ++V
Sbjct: 62  LASSPIALAAKQIAESPQEDNRGLALLVPVAAAVGWVLYNILGPALNQINKMRSE-KMSV 121

Query: 123 VGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVP-LPLIVAGCVALQVVLFST 182
           VGLGLGGL+T AASSA+  P ASA +EV+E E     G    L LIVA  VAL+VVL S+
Sbjct: 122 VGLGLGGLIT-AASSALLVPSASAVTEVIENEGAGNGGNQGLLALIVAAAVALEVVLLSS 181

Query: 183 MQSKYE 185
           MQSK E
Sbjct: 182 MQSKSE 185

[Close]

BLAST of Spo08811.1 vs. NCBI nr
Match: gi|568861014|ref|XP_006484003.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Citrus sinensis])

HSP 1 Score: 97.8 bits (242), Expect = 2.100e-17
Identity = 77/185 (41.62%), Postives = 102/185 (55.14%), Query Frame = 1


		  
Query: 2   AATTTSSIAIQIPKYHFIIRSSSSKPTS------VPVSQKPSNKPENSLSFARNLAVATT 61
           A       +I  PK    I+  ++KPTS      +P     S+KP +S S A   A+A  
Sbjct: 9   AVLNAKCFSISSPKSS--IKPGATKPTSPLSMQNLPKGLTVSSKPTDSSSLAAGTAIAGA 68

Query: 62  ILSPLASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDT 121
           I S L+S   A AA+QIAE  + DNRGL LL+P+  A+ WV+FNI  PALNQIN+MRS T
Sbjct: 69  IFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS-T 128

Query: 122 NVTVVGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVL 181
              ++GLGLGGL  AA       P ASAA+  V     AAS      L++    A+  VL
Sbjct: 129 KGVIIGLGLGGL--AATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVL 188

[Close]

BLAST of Spo08811.1 vs. NCBI nr
Match: gi|567891295|ref|XP_006438168.1| (hypothetical protein CICLE_v10032789mg [Citrus clementina])

HSP 1 Score: 97.8 bits (242), Expect = 2.100e-17
Identity = 77/185 (41.62%), Postives = 102/185 (55.14%), Query Frame = 1


		  
Query: 2   AATTTSSIAIQIPKYHFIIRSSSSKPTS------VPVSQKPSNKPENSLSFARNLAVATT 61
           A       +I  PK    I+  ++KPTS      +P     S+KP +S S A   A+A  
Sbjct: 9   AVLNAKCFSISSPKSS--IKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAGTAIAGA 68

Query: 62  ILSPLASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDT 121
           I S L+S   A AA+QIAE  + DNRGL LL+P+  A+ WV+FNI  PALNQIN+MRS T
Sbjct: 69  IFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS-T 128

Query: 122 NVTVVGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVL 181
              ++GLGLGGL  AA       P ASAA+  V     AAS      L++    A+  VL
Sbjct: 129 KGVIIGLGLGGL--AATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVL 188

[Close]

BLAST of Spo08811.1 vs. NCBI nr
Match: gi|985446439|ref|XP_015385272.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Citrus sinensis])

HSP 1 Score: 93.2 bits (230), Expect = 5.300e-16
Identity = 67/150 (44.67%), Postives = 93/150 (62.00%), Query Frame = 1


		  
Query: 31  PVSQKPSNKPENSLSFARNLAVATTILSPLASSPLALAAKQIAESPQEDNRGLLLLVPVA 90
           P + +   KP+ S S      +A  I S LA S  ALAAKQ+A++ + DNRGL LL+P+ 
Sbjct: 48  PTTWESCRKPDTSSSL-----MAGAIFSTLAYSDPALAAKQLADASEGDNRGLALLLPII 107

Query: 91  AALGWVVFNIFGPALNQINKMRSDTNVTVVGLGLGGLLTAAASSAVFAPIASAASEVVEG 150
            A+ WV++NI GPALNQIN+MR++  + V+GLGLGG     ASS    P A+A+   + G
Sbjct: 108 PAILWVLYNILGPALNQINRMRNEKGI-VIGLGLGGF---TASSLFTVPSATASEMAMLG 167

Query: 151 EVVAASGGVPLPLIVAGCVALQVVLFSTMQ 181
           E  + S G+ L  IVA   AL  VL++ +Q
Sbjct: 168 EASSDSRGLLLLAIVA--PALLWVLYNILQ 186

[Close]

BLAST of Spo08811.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFA4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_185730 PE=3 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 6.300e-93
Identity = 191/191 (100.00%), Postives = 191/191 (100.00%), Query Frame = 1


		  
Query: 1   MAATTTSSIAIQIPKYHFIIRSSSSKPTSVPVSQKPSNKPENSLSFARNLAVATTILSPL 60
           MAATTTSSIAIQIPKYHFIIRSSSSKPTSVPVSQKPSNKPENSLSFARNLAVATTILSPL
Sbjct: 1   MAATTTSSIAIQIPKYHFIIRSSSSKPTSVPVSQKPSNKPENSLSFARNLAVATTILSPL 60

Query: 61  ASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTVV 120
           ASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTVV
Sbjct: 61  ASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTVV 120

Query: 121 GLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFSTMQ 180
           GLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFSTMQ
Sbjct: 121 GLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFSTMQ 180

Query: 181 SKYEKEGGASH 192
           SKYEKEGGASH
Sbjct: 181 SKYEKEGGASH 191

[Close]

BLAST of Spo08811.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B8A9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g176840 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.300e-49
Identity = 127/186 (68.28%), Postives = 146/186 (78.49%), Query Frame = 1


		  
Query: 3   ATTTSSIAIQIPKYHFIIRSSSS-KPTSVPVSQ--KPSNKPENSLSFARNLAVATTILSP 62
           A TT S  I  PKYHFII SSSS KP+S+PVSQ  KPS+KP  S S A+ LA+A+T LSP
Sbjct: 2   AATTFSTTIHNPKYHFIISSSSSSKPSSLPVSQPLKPSSKPGKSWSLAKTLALASTALSP 61

Query: 63  LASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNVTV 122
           LASSP+ALAAKQIAESPQEDNRGL LLVPVAAA+GWV++NI GPALNQINKMRS+  ++V
Sbjct: 62  LASSPIALAAKQIAESPQEDNRGLALLVPVAAAVGWVLYNILGPALNQINKMRSE-KMSV 121

Query: 123 VGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVP-LPLIVAGCVALQVVLFST 182
           VGLGLGGL+T AASSA+  P ASA +EV+E E     G    L LIVA  VAL+VVL S+
Sbjct: 122 VGLGLGGLIT-AASSALLVPSASAVTEVIENEGAGNGGNQGLLALIVAAAVALEVVLLSS 181

Query: 183 MQSKYE 185
           MQSK E
Sbjct: 182 MQSKSE 185

[Close]

BLAST of Spo08811.1 vs. UniProtKB/TrEMBL
Match: A0A067GTU3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029024mg PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.500e-17
Identity = 77/185 (41.62%), Postives = 102/185 (55.14%), Query Frame = 1


		  
Query: 2   AATTTSSIAIQIPKYHFIIRSSSSKPTS------VPVSQKPSNKPENSLSFARNLAVATT 61
           A       +I  PK    I+  ++KPTS      +P     S+KP +S S A   A+A  
Sbjct: 9   AVLNAKCFSISSPKSS--IKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAGTAIAGA 68

Query: 62  ILSPLASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDT 121
           I S L+S   A AA+QIAE  + DNRGL LL+P+  A+ WV+FNI  PALNQIN+MRS T
Sbjct: 69  IFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS-T 128

Query: 122 NVTVVGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVL 181
              ++GLGLGGL  AA       P ASAA+  V     AAS      L++    A+  VL
Sbjct: 129 KGVIIGLGLGGL--AATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVL 188

[Close]

BLAST of Spo08811.1 vs. UniProtKB/TrEMBL
Match: V4SU74_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032789mg PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.500e-17
Identity = 77/185 (41.62%), Postives = 102/185 (55.14%), Query Frame = 1


		  
Query: 2   AATTTSSIAIQIPKYHFIIRSSSSKPTS------VPVSQKPSNKPENSLSFARNLAVATT 61
           A       +I  PK    I+  ++KPTS      +P     S+KP +S S A   A+A  
Sbjct: 9   AVLNAKCFSISSPKSS--IKPGTTKPTSPLSMQNLPKGLTVSSKPTDSSSLAAGTAIAGA 68

Query: 62  ILSPLASSPLALAAKQIAESPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDT 121
           I S L+S   A AA+QIAE  + DNRGL LL+P+  A+ WV+FNI  PALNQIN+MRS T
Sbjct: 69  IFSTLSSCDAAFAAQQIAEIAEGDNRGLALLLPIIPAIAWVLFNILQPALNQINRMRS-T 128

Query: 122 NVTVVGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVL 181
              ++GLGLGGL  AA       P ASAA+  V     AAS      L++    A+  VL
Sbjct: 129 KGVIIGLGLGGL--AATGLMSMPPHASAAASEVATIAEAASDSRGQLLLIVVTPAILWVL 188

[Close]

BLAST of Spo08811.1 vs. UniProtKB/TrEMBL
Match: A0A067G0Z7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029696mg PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.800e-16
Identity = 64/140 (45.71%), Postives = 88/140 (62.86%), Query Frame = 1


		  
Query: 31  PVSQKPSNKPENSLSFARNLAVATTILSPLASSPLALAAKQIAESPQEDNRGLLLLVPVA 90
           P + +   KP+ S S      +A  I S LA S  ALAAKQ+A++ + DNRGL LL+P+ 
Sbjct: 48  PTTWESCRKPDTSSSL-----MAGAIFSTLAYSDPALAAKQLADASEGDNRGLALLLPII 107

Query: 91  AALGWVVFNIFGPALNQINKMRSDTNVTVVGLGLGGLLTAAASSAVFAPIASAASEVVEG 150
            A+ WV++NI GPALNQIN+MR++  + V+GLGLGGL   AASS    P A A+   + G
Sbjct: 108 PAILWVLYNILGPALNQINRMRNEKGI-VIGLGLGGL---AASSFFTVPSAPASEMAMLG 167

Query: 151 EVVAASGGVPLPLIVAGCVA 171
           E  + S G+ L  IVA  ++
Sbjct: 168 EASSDSRGLLLLAIVASLLS 178

[Close]

BLAST of Spo08811.1 vs. ExPASy Swiss-Prot
Match: PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.100e-16
Identity = 74/193 (38.34%), Postives = 102/193 (52.85%), Query Frame = 1


		  
Query: 1   MAATTTSSIAIQIPKYHFI----IRSSSSKPTSVPVSQKPSNKPENSLSFARNL-----A 60
           MAAT  +++A+   K   +      S+S KPTS P+S  P     + L    +      A
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60

Query: 61  VATTILSPLASSPLALAAKQIAESPQE----DNRGLLLLVPVAAALGWVVFNIFGPALNQ 120
           +A  + + L S   A A +Q+A+   E    DNRGL LL+P+  ALGWV+FNI  PALNQ
Sbjct: 61  IAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120

Query: 121 INKMRSDTNVTVVGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAG 180
           INKMR++    +VGLGL GL T+    A   P A AASE    E+   S      L++  
Sbjct: 121 INKMRNEKKAFIVGLGLSGLATSGLLLA--TPEAQAASE----EIARGSDNRGTLLLLVV 180

[Close]

BLAST of Spo08811.1 vs. ExPASy Swiss-Prot
Match: PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.000e-11
Identity = 67/183 (36.61%), Postives = 97/183 (53.01%), Query Frame = 1


		  
Query: 3   ATTTSSIAIQIPKYHFIIRSSSSKP-TSVPVSQKPSNKPENSLSFARNLAVATTILSPLA 62
           AT T  +++  P    +   + SKP  S+P   KP     N      + A+A  + S L+
Sbjct: 6   ATATKCMSLN-PSPPKLQNQTKSKPFISLPTPPKP-----NVSLAVTSTALAGAVFSSLS 65

Query: 63  SSPLALAAKQIAE----SPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNV 122
            S  ALA +QIA+    +   DNRGL LL+P+  A+ WV++NI  PA+NQ+NKMR    +
Sbjct: 66  YSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGI 125

Query: 123 TVVGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFS 181
            VVGLG+GG L AA+      P A AA+E       A+S      L++    AL  VL++
Sbjct: 126 -VVGLGIGGGL-AASGLLTPPPEAYAAAEA----AAASSDSRGQLLLIVVTPALLWVLYN 176

[Close]

BLAST of Spo08811.1 vs. TAIR (Arabidopsis)
Match: AT1G67740.1 (photosystem II BY)

HSP 1 Score: 71.6 bits (174), Expect = 5.800e-13
Identity = 67/183 (36.61%), Postives = 97/183 (53.01%), Query Frame = 1


		  
Query: 3   ATTTSSIAIQIPKYHFIIRSSSSKP-TSVPVSQKPSNKPENSLSFARNLAVATTILSPLA 62
           AT T  +++  P    +   + SKP  S+P   KP     N      + A+A  + S L+
Sbjct: 6   ATATKCMSLN-PSPPKLQNQTKSKPFISLPTPPKP-----NVSLAVTSTALAGAVFSSLS 65

Query: 63  SSPLALAAKQIAE----SPQEDNRGLLLLVPVAAALGWVVFNIFGPALNQINKMRSDTNV 122
            S  ALA +QIA+    +   DNRGL LL+P+  A+ WV++NI  PA+NQ+NKMR    +
Sbjct: 66  YSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGI 125

Query: 123 TVVGLGLGGLLTAAASSAVFAPIASAASEVVEGEVVAASGGVPLPLIVAGCVALQVVLFS 181
            VVGLG+GG L AA+      P A AA+E       A+S      L++    AL  VL++
Sbjct: 126 -VVGLGIGGGL-AASGLLTPPPEAYAAAEA----AAASSDSRGQLLLIVVTPALLWVLYN 176

The following BLAST results are available for this feature:

BLAST of Spo08811.1 vs. NCBI nr
BLAST of Spo08811.1 vs. UniProtKB/TrEMBL
BLAST of Spo08811.1 vs. ExPASy Swiss-Prot
BLAST of Spo08811.1 vs. TAIR (Arabidopsis)

BLAST of Spo08811.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902155686\|gb\|KNA05935.1\|	9.1e-93	100.	hypothetical protein SOVF_1857...	[more]
gi\|731368103\|ref\|XP_010695963.1\|	4.7e-49	68.2	PREDICTED: photosystem II core...	[more]
gi\|568861014\|ref\|XP_006484003.1\|	2.1e-17	41.6	PREDICTED: photosystem II core...	[more]
gi\|567891295\|ref\|XP_006438168.1\|	2.1e-17	41.6	hypothetical protein CICLE_v10...	[more]
gi\|985446439\|ref\|XP_015385272.1\|	5.3e-16	44.6	PREDICTED: photosystem II core...	[more]

BLAST of Spo08811.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QFA4_SPIOL	6.3e-93	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8B8A9_BETVU	3.3e-49	68.2	Uncharacterized protein OS=Bet...	[more]
A0A067GTU3_CITSI	1.5e-17	41.6	Uncharacterized protein OS=Cit...	[more]
V4SU74_9ROSI	1.5e-17	41.6	Uncharacterized protein OS=Cit...	[more]
A0A067G0Z7_CITSI	4.8e-16	45.7	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo08811.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2


Match Name	E-value	Identity	Description
PSBY_SPIOL	1.1e-16	38.3	Photosystem II core complex pr...	[more]
PSBY_ARATH	1.0e-11	36.6	Photosystem II core complex pr...	[more]

BLAST of Spo08811.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G67740.1	5.8e-13	36.6	photosystem II BY	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009388	Photosystem II PsbY	HAMAP	MF_00717	PSII_PsbY	coord: 79..113 score: 11
IPR009388	Photosystem II PsbY	PFAM	PF06298	PsbY	coord: 79..111 score: 2.8
None	No IPR available	PANTHER	PTHR34790	FAMILY NOT NAMED	coord: 11..181 score: 6.7

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0030145	manganese ion binding