Spo09316.1 (mRNA) | SpinachBase

Overview


Name	Spo09316.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RING/FYVE/PHD zinc finger superfamily protein, putative
Location	SpoScf_01878 : 5596 .. 8325 (+)
Sequence length	1090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCAAGAAACTGTTGTCGAGCTTCAAGAAACTGAGAAACAGAATTCAGGTTGTTCAATTAATGATGCAAGAGTTTCAGAAAGTATGATTACAATACAGGAAGATTCACCAGATTTGAGTTGTTCACAAGAACCATCTGTTTCTTCTGTTGCTGTTAATGTTGTCAGAGATTCTGAAAACAGATCAGCTGATTCAGGGGAGAGTTGTGCAACAGGAATTGTGGGTGAAACAAAGGTTGCTGAAGATAGAAAAGAGAGAGAGAAATCGTGGGTTGTTGATTTAAAACTTGGTGATGGAGATATTTGTGATGGTGAAATAGTTTGTAGGATTTGTCACTTGAGTTCTGAGCAACCATGGAAGTTTCCATTTTTCGCGGCGAAAACTGATCTTATTATGCTTGGATGTGGATGTAAAGGTGAACTTAGTGTTGCACATTCTTATTGTGGCGAAGCTTGGTTCAAGCTCAAGGGAAACAGGTAAATACAATTTCTATATGTTTTCTGTTTATTTTAGGTATAATGTTTTGTGGTTTCAAACTCAACAGTGCAATAGATAACATCTGTGATAGCATTTAGGTTGATTTAGTCGGTGGTTACAATTTGTTTTTGCAAAGGTGTTCCGTAAAATCACCACTTGTTAGTTGTACTCGCCGATTGTACCATGAACTTCGACTTTTGATGTTTGATACTTCTTCCTTACCAAAATTAAAGTCTTGTATTTTAAATCGGGGCGTACTATAATTATAATCTTATTTTCTTATTTGAATCTAAAATACTTTTCTCATATTACACTCCTTTAGGACAACAAAAGGAAAAAAAACGTTGCATAGAAAACTTCCCTATGTACTAAATCCCCTTCTCCACGTACTTAAATTTTTTTACAGGAACTTTATTCGTTCTTACATACAAATTAATCAACAATATACTATATTTCAAATTAATATATTTTAAATTATTCGTTCTTAAATACAAATATTCTAATATCTCATACAAATTAATCATCAATATACAAAATTTCAATTTTCTTAAAATTCGTATTTTTAGTGAAATAAAAATATAATTTTGGGACGGAGAGAGTATTACGGAATACCTAACTACAAGTTGTTACTTTGATGACTTGAAAGTGTAAGATTAAGGATTTAGGTATGTAGCTTTCTGTAGGTTCATAAAGTCAACACATTCACAAATAGCACATCTTGGTTAAGATTAAATTATACTCCCAACTTTCTTTGGCGTTTAATCTCAGATTTGACTATTTGGGAAGTGATCCATTCTGGATGTGCCTATTGCTTTTTACCAGTTCTAGACTAATAGAGCCCGGATCCAATACGTATCCGACACTAGATTATTTGATTTGACATCAGTCACATCACCAAGCCAAACCGATTATTAATGTGATTGTTTTTCTTAATAACATTGAATTAACAAATAAACCCGAATATAACCTGGTGTGACCAAACTTGAAAACCAAATGAATCATTACTTGAATATATTTTGAACAAAGATATTGAACTCCTTTATGTTACTCTAGAGTCTAGATATGATAGGAAACAAAGAGTGTTAATTAAAACCTTGAAAACATGTCAATGGTTAATTATTTTCGGATGACATATCACAAGATTATCCAGAATAACTTTGTTCATTTTGATGATCCTATTATAGCGAGTCTGATTTGGACGAAGACAACTTACTGTAAATATTAGCAGTCCATAAAAATGAAAGTTGCATATGCAAGCTGGAAAGCCCGTGAAAGTTGTTGCTTTGCTTTTTCATGAACAAATGTGTAACCTGTGTTAGAAAAGTATGGGAAGTTCCACTTGCAGACCTTTCTGCATAAGTAAGTTATCACTTATGTGGGTATTAAGTTGCGTAAAAAGTTGATCAACCTCACAACAGATCATGAAGTTCCCATGAGAAAATTAAAAAATCTTTCCCTTTGGTCTCAGAACTCTCGAGTAACTAGTTTCACAAAGTTATATTCTCTTCTATCGATATGTTGTATCGTATTTCAGTAATACAATCGGATTACAGTTTATCAACTCCATTCCCAACTCAAATGCGGAGTAGTAGGACTTTATGAAATTAAAGTTTCTTATATTGGCTTTGTGATTGTGTAGGATATGCGAAATATGTGGGGAGATAGCAAATAATATAAGAGGAGTGGGGAACGAGAGCTTCATGGAGGAGTGGAAAGATGGCAGAATGAATGCTAACGCATTAGACTCAGCGGACAGGAGTGCAGAAGGATGCTGGCATGGACAGCCATTGTGTAACTTCCTCATGGCCTGCTTGGTCATCGCCTTTGTCCTACCATGGTTTTTTCGATTCAGCATGTTCTGATTTTTCCGAATGTGTACATAATTTTTTCGACAACATAATAAATCCTTTTTTCCTAGCCAATTAATGCCTAAGATTTTGGTTTAATTTTCCTACACACGAGCATTTTTAGTTTCGAGATTTGAGAAATCAAGTTTGAGGTTCAAGATCTGAGCAGTGGCAACAGGTTGTATTTTAACTGTATAGTGGTATGGATGGTACTTGAACCCATAACTTGGGAGTTCCTAAATTCATATTTTTCTTATGAATATACTTGCCCAATTGGAAGAAATGTGGATTATTTATGGGATGTCACACCAATATTTAAGGACTTGATCTTGTAGGAATGTAGGATATTCAATTGGATTGAGTAGTAGAAATGTCAAATTACCAACTTGATACACCAAAGACA

mRNA sequence

ATGATTCAAGAAACTGTTGTCGAGCTTCAAGAAACTGAGAAACAGAATTCAGGTTGTTCAATTAATGATGCAAGAGTTTCAGAAAGTATGATTACAATACAGGAAGATTCACCAGATTTGAGTTGTTCACAAGAACCATCTGTTTCTTCTGTTGCTGTTAATGTTGTCAGAGATTCTGAAAACAGATCAGCTGATTCAGGGGAGAGTTGTGCAACAGGAATTGTGGGTGAAACAAAGGTTGCTGAAGATAGAAAAGAGAGAGAGAAATCGTGGGTTGTTGATTTAAAACTTGGTGATGGAGATATTTGTGATGGTGAAATAGTTTGTAGGATTTGTCACTTGAGTTCTGAGCAACCATGGAAGTTTCCATTTTTCGCGGCGAAAACTGATCTTATTATGCTTGGATGTGGATGTAAAGGTGAACTTAGTGTTGCACATTCTTATTGTGGCGAAGCTTGGTTCAAGCTCAAGGGAAACAGGATATGCGAAATATGTGGGGAGATAGCAAATAATATAAGAGGAGTGGGGAACGAGAGCTTCATGGAGGAGTGGAAAGATGGCAGAATGAATGCTAACGCATTAGACTCAGCGGACAGGAGTGCAGAAGGATGCTGGCATGGACAGCCATTGTGTAACTTCCTCATGGCCTGCTTGGTCATCGCCTTTGTCCTACCATGGTTTTTTCGATTCAGCATGTTCTGATTTTTCCGAATGTGTACATAATTTTTTCGACAACATAATAAATCCTTTTTTCCTAGCCAATTAATGCCTAAGATTTTGGTTTAATTTTCCTACACACGAGCATTTTTAGTTTCGAGATTTGAGAAATCAAGTTTGAGGTTCAAGATCTGAGCAGTGGCAACAGGTTGTATTTTAACTGTATAGTGGTATGGATGGTACTTGAACCCATAACTTGGGAGTTCCTAAATTCATATTTTTCTTATGAATATACTTGCCCAATTGGAAGAAATGTGGATTATTTATGGGATGTCACACCAATATTTAAGGACTTGATCTTGTAGGAATGTAGGATATTCAATTGGATTGAGTAGTAGAAATGTCAAATTACCAACTTGATACACCAAAGACA

Coding sequence (CDS)

ATGATTCAAGAAACTGTTGTCGAGCTTCAAGAAACTGAGAAACAGAATTCAGGTTGTTCAATTAATGATGCAAGAGTTTCAGAAAGTATGATTACAATACAGGAAGATTCACCAGATTTGAGTTGTTCACAAGAACCATCTGTTTCTTCTGTTGCTGTTAATGTTGTCAGAGATTCTGAAAACAGATCAGCTGATTCAGGGGAGAGTTGTGCAACAGGAATTGTGGGTGAAACAAAGGTTGCTGAAGATAGAAAAGAGAGAGAGAAATCGTGGGTTGTTGATTTAAAACTTGGTGATGGAGATATTTGTGATGGTGAAATAGTTTGTAGGATTTGTCACTTGAGTTCTGAGCAACCATGGAAGTTTCCATTTTTCGCGGCGAAAACTGATCTTATTATGCTTGGATGTGGATGTAAAGGTGAACTTAGTGTTGCACATTCTTATTGTGGCGAAGCTTGGTTCAAGCTCAAGGGAAACAGGATATGCGAAATATGTGGGGAGATAGCAAATAATATAAGAGGAGTGGGGAACGAGAGCTTCATGGAGGAGTGGAAAGATGGCAGAATGAATGCTAACGCATTAGACTCAGCGGACAGGAGTGCAGAAGGATGCTGGCATGGACAGCCATTGTGTAACTTCCTCATGGCCTGCTTGGTCATCGCCTTTGTCCTACCATGGTTTTTTCGATTCAGCATGTTCTGA

Protein sequence

MIQETVVELQETEKQNSGCSINDARVSESMITIQEDSPDLSCSQEPSVSSVAVNVVRDSENRSADSGESCATGIVGETKVAEDRKEREKSWVVDLKLGDGDICDGEIVCRICHLSSEQPWKFPFFAAKTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICEICGEIANNIRGVGNESFMEEWKDGRMNANALDSADRSAEGCWHGQPLCNFLMACLVIAFVLPWFFRFSMF

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo09316	Spo09316	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo09316.1	Spo09316.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09316.1.exon.1	Spo09316.1.exon.1	exon
Spo09316.1.exon.2	Spo09316.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09316.1.CDS.1	Spo09316.1.CDS.1	CDS
Spo09316.1.CDS.2	Spo09316.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09316.1.utr3p.1	Spo09316.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo09316.1 vs. NCBI nr
Match: gi|902188804|gb|KNA11227.1| (hypothetical protein SOVF_137110 [Spinacia oleracea])

HSP 1 Score: 481.5 bits (1238), Expect = 8.400e-133
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1


		  
Query: 1   MIQETVVELQETEKQNSGCSINDARVSESMITIQEDSPDLSCSQEPSVSSVAVNVVRDSE 60
           MIQETVVELQETEKQNSGCSINDARVSESMITIQEDSPDLSCSQEPSVSSVAVNVVRDSE
Sbjct: 1   MIQETVVELQETEKQNSGCSINDARVSESMITIQEDSPDLSCSQEPSVSSVAVNVVRDSE 60

Query: 61  NRSADSGESCATGIVGETKVAEDRKEREKSWVVDLKLGDGDICDGEIVCRICHLSSEQPW 120
           NRSADSGESCATGIVGETKVAEDRKEREKSWVVDLKLGDGDICDGEIVCRICHLSSEQPW
Sbjct: 61  NRSADSGESCATGIVGETKVAEDRKEREKSWVVDLKLGDGDICDGEIVCRICHLSSEQPW 120

Query: 121 KFPFFAAKTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICEICGEIANNIRGVGNESF 180
           KFPFFAAKTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICEICGEIANNIRGVGNESF
Sbjct: 121 KFPFFAAKTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICEICGEIANNIRGVGNESF 180

Query: 181 MEEWKDGRMNANALDSADRSAEGCWHGQPLCNFLMACLVIAFVLPWFFRFSMF 234
           MEEWKDGRMNANALDSADRSAEGCWHGQPLCNFLMACLVIAFVLPWFFRFSMF
Sbjct: 181 MEEWKDGRMNANALDSADRSAEGCWHGQPLCNFLMACLVIAFVLPWFFRFSMF 233

[Close]

BLAST of Spo09316.1 vs. NCBI nr
Match: gi|731349886|ref|XP_010686228.1| (PREDICTED: uncharacterized protein LOC104900504 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 307.0 bits (785), Expect = 2.800e-80
Identity = 159/236 (67.37%), Postives = 176/236 (74.58%), Query Frame = 1


		  
Query: 4   ETVVELQETEKQNSGCSINDARVSESMITIQEDSPDLSCSQEPSVSSVAVNVVRDSENRS 63
           ETVVE Q TEKQ  GCS+NDA VSE++I I ED P                    SENRS
Sbjct: 5   ETVVEFQATEKQILGCSVNDATVSETVIVIPEDLPV-------------------SENRS 64

Query: 64  ADSGESCATGIVGETKVAEDRKER--EKSWVV----DLKLGDGDICDGEIVCRICHLSSE 123
               ESCATGIV E +V+E+  +   +K WVV    D K G+    DGE VCRICHL+SE
Sbjct: 65  T---ESCATGIVDEAEVSENNNKDVDKKLWVVVDDDDDKCGE----DGERVCRICHLNSE 124

Query: 124 QPWKFPFFAAKTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICEICGEIANNIRGVGN 183
           QPWK  FFA+KTDLI+LGCGCKGELSV+H YC EAWFKLKGNRICEICGE ANN+RGVGN
Sbjct: 125 QPWKLAFFASKTDLILLGCGCKGELSVSHLYCAEAWFKLKGNRICEICGETANNVRGVGN 184

Query: 184 ESFMEEWKDGRMNANALDSADRSAEGCWHGQPLCNFLMACLVIAFVLPWFFRFSMF 234
           ESFMEEWKD RM ANA D++DRSAEGCWHGQPLCNFLMACLVIAFVLPWFFR +MF
Sbjct: 185 ESFMEEWKDSRMTANATDASDRSAEGCWHGQPLCNFLMACLVIAFVLPWFFRVNMF 214

[Close]

BLAST of Spo09316.1 vs. NCBI nr
Match: gi|984697143|gb|AMB72435.1| (zinc-finger protein [Mesembryanthemum crystallinum])

HSP 1 Score: 243.4 bits (620), Expect = 3.800e-61
Identity = 134/247 (54.25%), Postives = 164/247 (66.40%), Query Frame = 1


		  
Query: 1   MIQETVVELQETEKQNSGCS-----------INDARVSESMIT-IQEDSPDL--SCSQEP 60
           M  ETV   QETEKQNSGC+           +N A VSE++I  I ++ P+L  SC+   
Sbjct: 1   MGHETVDGFQETEKQNSGCATNEENAMNSCKVNSASVSETVIIGIPKELPNLNNSCATIS 60

Query: 61  SVSSVAVNVVRDSENRSADSGESCATGIVGETKVAEDRKEREKSWVVDLKLGDGDICDGE 120
           + S+VA     DSENR  +SGE+             D +   KSWVVD+K  D    + E
Sbjct: 61  ADSAVAT----DSENRLNNSGENAK---------VRDAENEGKSWVVDVKCRDE---EEE 120

Query: 121 IVCRICHLSSEQPWKFPFFAAKTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICEICG 180
            VCRICHLSSEQ  K P    KT+LI LGC C GELS+AHSYC EAWFKLKGNR+CEICG
Sbjct: 121 RVCRICHLSSEQGMK-PSMGWKTELIRLGCSCNGELSLAHSYCAEAWFKLKGNRVCEICG 180

Query: 181 EIANNIRGVGNESFMEEWKDGRMNANALDSADRSAEGCWHGQPLCNFLMACLVIAFVLPW 234
           E+ +NIRG+G+E FMEEW +  +N N L+S++R  +GCWHGQP CNFLMACLVIAFV+PW
Sbjct: 181 EMVSNIRGIGDEMFMEEWIESGLNGNELNSSERHGDGCWHGQPFCNFLMACLVIAFVVPW 230

[Close]

BLAST of Spo09316.1 vs. NCBI nr
Match: gi|565403377|ref|XP_006367137.1| (PREDICTED: uncharacterized protein LOC102581638 [Solanum tuberosum])

HSP 1 Score: 191.0 bits (484), Expect = 2.300e-45
Identity = 96/190 (50.53%), Postives = 120/190 (63.16%), Query Frame = 1


		  
Query: 51  VAVNVVRDSENRSADSGESCATGIVGETKVAEDRKEREKSWVVDLKL--GDGDIC----- 110
           V + +  D E   +  G         E +V + +K  + S V+D+K   GDG +      
Sbjct: 19  VTIRLDEDGETEKSRIGVEDGDSEGNEVEVKDLKKGDDFSTVIDVKCDGGDGKLGEDLEG 78

Query: 111 DGEIVCRICHLSSEQPWKFPFFAAKTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICE 170
           DG+ VCRICHLS+ +  K        DLI LGCGCKGEL   HS+C EAWFKLKGNR+CE
Sbjct: 79  DGQRVCRICHLSTYEAEK-----NLVDLIELGCGCKGELGFVHSHCAEAWFKLKGNRVCE 138

Query: 171 ICGEIANNIRGVGNESFMEEWKDGRMNANALDSADRSAEGCWHGQPLCNFLMACLVIAFV 230
           ICGE+A N+ GV N  F+EEW D R  A+ + S + +  GCWHGQP CNFLMACLVI+FV
Sbjct: 139 ICGEVAQNVTGVSNNRFIEEWNDARSTASGVGSTE-TTRGCWHGQPFCNFLMACLVISFV 198

Query: 231 LPWFFRFSMF 234
           LPWFFR +MF
Sbjct: 199 LPWFFRVNMF 202

[Close]

BLAST of Spo09316.1 vs. NCBI nr
Match: gi|802786978|ref|XP_012091806.1| (PREDICTED: uncharacterized protein LOC105649689 [Jatropha curcas])

HSP 1 Score: 190.7 bits (483), Expect = 3.000e-45
Identity = 98/179 (54.75%), Postives = 117/179 (65.36%), Query Frame = 1


		  
Query: 60  ENRSADSGESCATGIVGETKVAEDRKEREKSWVVDLKL---GDGDICDG--EIVCRICHL 119
           E + +D G+S  T    +TKV++  K+   S V+D+K    G G + D   E VCRICHL
Sbjct: 184 EIKGSDLGQSKITADKSKTKVSKGEKQ---SCVIDMKCAGGGGGSVLDWDRETVCRICHL 243

Query: 120 SSEQPWKFPFFAAKTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICEICGEIANNIRG 179
           +SE         ++TDLI LGCGCK EL + H+YC EAWFKLKGNRICEICGE A NI G
Sbjct: 244 NSEGLLVTDAPDSRTDLIQLGCGCKDELGIVHAYCAEAWFKLKGNRICEICGEAAKNITG 303

Query: 180 VGNESFMEEWKDGRMNANALDSADRSAEGCWHGQPLCNFLMACLVIAFVLPWFFRFSMF 234
           VG+  F+EEW   R       S+DR    CW GQP CNFLMACLVIAFVLPWFFR +MF
Sbjct: 304 VGDNRFVEEWNQRRFIGTNSSSSDRGG-SCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 358

[Close]

BLAST of Spo09316.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVC1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_137110 PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 5.800e-133
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1


		  
Query: 1   MIQETVVELQETEKQNSGCSINDARVSESMITIQEDSPDLSCSQEPSVSSVAVNVVRDSE 60
           MIQETVVELQETEKQNSGCSINDARVSESMITIQEDSPDLSCSQEPSVSSVAVNVVRDSE
Sbjct: 1   MIQETVVELQETEKQNSGCSINDARVSESMITIQEDSPDLSCSQEPSVSSVAVNVVRDSE 60

Query: 61  NRSADSGESCATGIVGETKVAEDRKEREKSWVVDLKLGDGDICDGEIVCRICHLSSEQPW 120
           NRSADSGESCATGIVGETKVAEDRKEREKSWVVDLKLGDGDICDGEIVCRICHLSSEQPW
Sbjct: 61  NRSADSGESCATGIVGETKVAEDRKEREKSWVVDLKLGDGDICDGEIVCRICHLSSEQPW 120

Query: 121 KFPFFAAKTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICEICGEIANNIRGVGNESF 180
           KFPFFAAKTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICEICGEIANNIRGVGNESF
Sbjct: 121 KFPFFAAKTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICEICGEIANNIRGVGNESF 180

Query: 181 MEEWKDGRMNANALDSADRSAEGCWHGQPLCNFLMACLVIAFVLPWFFRFSMF 234
           MEEWKDGRMNANALDSADRSAEGCWHGQPLCNFLMACLVIAFVLPWFFRFSMF
Sbjct: 181 MEEWKDGRMNANALDSADRSAEGCWHGQPLCNFLMACLVIAFVLPWFFRFSMF 233

[Close]

BLAST of Spo09316.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EN58_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g181060 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 2.000e-80
Identity = 159/236 (67.37%), Postives = 176/236 (74.58%), Query Frame = 1


		  
Query: 4   ETVVELQETEKQNSGCSINDARVSESMITIQEDSPDLSCSQEPSVSSVAVNVVRDSENRS 63
           ETVVE Q TEKQ  GCS+NDA VSE++I I ED P                    SENRS
Sbjct: 5   ETVVEFQATEKQILGCSVNDATVSETVIVIPEDLPV-------------------SENRS 64

Query: 64  ADSGESCATGIVGETKVAEDRKER--EKSWVV----DLKLGDGDICDGEIVCRICHLSSE 123
               ESCATGIV E +V+E+  +   +K WVV    D K G+    DGE VCRICHL+SE
Sbjct: 65  T---ESCATGIVDEAEVSENNNKDVDKKLWVVVDDDDDKCGE----DGERVCRICHLNSE 124

Query: 124 QPWKFPFFAAKTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICEICGEIANNIRGVGN 183
           QPWK  FFA+KTDLI+LGCGCKGELSV+H YC EAWFKLKGNRICEICGE ANN+RGVGN
Sbjct: 125 QPWKLAFFASKTDLILLGCGCKGELSVSHLYCAEAWFKLKGNRICEICGETANNVRGVGN 184

Query: 184 ESFMEEWKDGRMNANALDSADRSAEGCWHGQPLCNFLMACLVIAFVLPWFFRFSMF 234
           ESFMEEWKD RM ANA D++DRSAEGCWHGQPLCNFLMACLVIAFVLPWFFR +MF
Sbjct: 185 ESFMEEWKDSRMTANATDASDRSAEGCWHGQPLCNFLMACLVIAFVLPWFFRVNMF 214

[Close]

BLAST of Spo09316.1 vs. UniProtKB/TrEMBL
Match: A0A109R6M0_MESCR (Zinc-finger protein OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.700e-61
Identity = 134/247 (54.25%), Postives = 164/247 (66.40%), Query Frame = 1


		  
Query: 1   MIQETVVELQETEKQNSGCS-----------INDARVSESMIT-IQEDSPDL--SCSQEP 60
           M  ETV   QETEKQNSGC+           +N A VSE++I  I ++ P+L  SC+   
Sbjct: 1   MGHETVDGFQETEKQNSGCATNEENAMNSCKVNSASVSETVIIGIPKELPNLNNSCATIS 60

Query: 61  SVSSVAVNVVRDSENRSADSGESCATGIVGETKVAEDRKEREKSWVVDLKLGDGDICDGE 120
           + S+VA     DSENR  +SGE+             D +   KSWVVD+K  D    + E
Sbjct: 61  ADSAVAT----DSENRLNNSGENAK---------VRDAENEGKSWVVDVKCRDE---EEE 120

Query: 121 IVCRICHLSSEQPWKFPFFAAKTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICEICG 180
            VCRICHLSSEQ  K P    KT+LI LGC C GELS+AHSYC EAWFKLKGNR+CEICG
Sbjct: 121 RVCRICHLSSEQGMK-PSMGWKTELIRLGCSCNGELSLAHSYCAEAWFKLKGNRVCEICG 180

Query: 181 EIANNIRGVGNESFMEEWKDGRMNANALDSADRSAEGCWHGQPLCNFLMACLVIAFVLPW 234
           E+ +NIRG+G+E FMEEW +  +N N L+S++R  +GCWHGQP CNFLMACLVIAFV+PW
Sbjct: 181 EMVSNIRGIGDEMFMEEWIESGLNGNELNSSERHGDGCWHGQPFCNFLMACLVIAFVVPW 230

[Close]

BLAST of Spo09316.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HNM8_SOLCH (Putative E3 ubiquitin-protein ligase MARCH8-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 2.400e-46
Identity = 98/190 (51.58%), Postives = 120/190 (63.16%), Query Frame = 1


		  
Query: 51  VAVNVVRDSENRSADSGESCATGIVGETKVAEDRKEREKSWVVDLKL--GDGDIC----- 110
           V + +  D E   +  G         E KV + +K  E S V+D+K   GDG +      
Sbjct: 19  VTIRLDEDGETEKSRIGVEDGDSEGNEVKVKDLKKGDEFSTVIDVKCDGGDGKLGEDLEG 78

Query: 111 DGEIVCRICHLSSEQPWKFPFFAAKTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICE 170
           DG+ VCRICHLS+ +  K        DLI LGCGCKGEL   HS+C EAWFKLKGNR+CE
Sbjct: 79  DGQRVCRICHLSTYEAEK-----NLVDLIELGCGCKGELGFVHSHCAEAWFKLKGNRVCE 138

Query: 171 ICGEIANNIRGVGNESFMEEWKDGRMNANALDSADRSAEGCWHGQPLCNFLMACLVIAFV 230
           ICGE+A N+ GV N  F+EEW D R  A+ + S + +  GCWHGQP CNFLMACLVI+FV
Sbjct: 139 ICGEVAQNVTGVSNNRFIEEWNDARSTASGVGSTE-TTRGCWHGQPFCNFLMACLVISFV 198

Query: 231 LPWFFRFSMF 234
           LPWFFR +MF
Sbjct: 199 LPWFFRVNMF 202

[Close]

BLAST of Spo09316.1 vs. UniProtKB/TrEMBL
Match: M1CJG9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400026745 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.600e-45
Identity = 96/190 (50.53%), Postives = 120/190 (63.16%), Query Frame = 1


		  
Query: 51  VAVNVVRDSENRSADSGESCATGIVGETKVAEDRKEREKSWVVDLKL--GDGDIC----- 110
           V + +  D E   +  G         E +V + +K  + S V+D+K   GDG +      
Sbjct: 19  VTIRLDEDGETEKSRIGVEDGDSEGNEVEVKDLKKGDDFSTVIDVKCDGGDGKLGEDLEG 78

Query: 111 DGEIVCRICHLSSEQPWKFPFFAAKTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICE 170
           DG+ VCRICHLS+ +  K        DLI LGCGCKGEL   HS+C EAWFKLKGNR+CE
Sbjct: 79  DGQRVCRICHLSTYEAEK-----NLVDLIELGCGCKGELGFVHSHCAEAWFKLKGNRVCE 138

Query: 171 ICGEIANNIRGVGNESFMEEWKDGRMNANALDSADRSAEGCWHGQPLCNFLMACLVIAFV 230
           ICGE+A N+ GV N  F+EEW D R  A+ + S + +  GCWHGQP CNFLMACLVI+FV
Sbjct: 139 ICGEVAQNVTGVSNNRFIEEWNDARSTASGVGSTE-TTRGCWHGQPFCNFLMACLVISFV 198

Query: 231 LPWFFRFSMF 234
           LPWFFR +MF
Sbjct: 199 LPWFFRVNMF 202

[Close]

BLAST of Spo09316.1 vs. TAIR (Arabidopsis)
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 116.7 bits (291), Expect = 1.900e-26
Identity = 73/202 (36.14%), Postives = 105/202 (51.98%), Query Frame = 1


		  
Query: 51  VAVNVVRDSENRSADSGESCATGIVG-ETKVAEDRKEREKSWV----VDLKLGDGD---- 110
           V+V V+  S     D     ++G V  E ++ +D + R  + V    +DL+LG  +    
Sbjct: 12  VSVKVINSSSGCDGDGEPRRSSGAVEKEEEIVKDEERRSNASVCSVEIDLELGLPEKVVH 71

Query: 111 ICDGEIVCRICHLSSEQPWKFPFFAAKTDL---IMLGCGCKGELSVAHSYCGEAWFKLKG 170
           +   E  CRICH+S +        AA  +    I LGC CK +L+ AH +C E WFK+KG
Sbjct: 72  LSQSERDCRICHMSLD--------AANLESGVPIELGCSCKADLAAAHKHCAETWFKIKG 131

Query: 171 NRICEICGEIANNIRGVGNESFMEEWKDGRMNANALD------SADRSAEG--CWHGQPL 230
           N+ICE+CG IA N+ G    S   E ++ R  AN ++      S  R  EG   W G   
Sbjct: 132 NKICEVCGSIAGNVVG----SVEVESEESRNEANGVENLTLRTSGPRLVEGRSFWQGHRF 191

Query: 231 CNFLMACLVIAFVLPWFFRFSM 233
            NFL+AC+V AFV+ W F F++
Sbjct: 192 LNFLLACMVFAFVISWLFHFNV 201

[Close]

BLAST of Spo09316.1 vs. TAIR (Arabidopsis)
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 8.300e-22
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 1


		  
Query: 132 IMLGCGCKGELSVAHSYCGEAWFKLKGNRICEICGEIANNIRGVGNESFMEEWKDGRMNA 191
           + LGC CKG+L VAHS C E WFK+KGN  CEICG +A N+   G +S  E        A
Sbjct: 130 LQLGCSCKGDLGVAHSKCAETWFKIKGNMTCEICGAMALNV--AGEQSNPESTASTHSQA 189

Query: 192 NALDSADRS-AEGCWHGQPLCNFLMACLVIAFVLPWFFRFSM 233
            A  S  ++   G WHG+P+ NFL+A +V AFV+ W F F +
Sbjct: 190 AAGQSLTQTEPRGIWHGRPVMNFLLAAMVFAFVVSWLFHFKV 229

[Close]

BLAST of Spo09316.1 vs. TAIR (Arabidopsis)
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 94.7 bits (234), Expect = 7.800e-20
Identity = 47/126 (37.30%), Postives = 63/126 (50.00%), Query Frame = 1


		  
Query: 109 CRICHLSSEQPWKFPFFAAKTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICEICGEI 168
           CRICHL  E         +    I LGC CK +L+VAH  C E WFK+KG++ CEIC  +
Sbjct: 84  CRICHLGVE--------TSGGGAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSV 143

Query: 169 ANNIRG----VGNESFMEEWKDGRMNANALDSADRSAEGCWHGQPLCNFLMACLVIAFVL 228
           A N+ G    VG+     E ++G   A          E  W  Q + N ++AC+V  F +
Sbjct: 144 ARNVGGANEMVGSTMEERELRNGEETAAGEGGGATVVENRWQPQRVVNLVLACMVFGFFI 201

Query: 229 PWFFRF 231
            W F F
Sbjct: 204 SWIFHF 201

[Close]

BLAST of Spo09316.1 vs. TAIR (Arabidopsis)
Match: AT2G34200.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 92.4 bits (228), Expect = 3.900e-19
Identity = 71/231 (30.74%), Postives = 113/231 (48.92%), Query Frame = 1


		  
Query: 3   QETVVELQETEKQNSGCSINDARVSESMITIQEDSPDLSCSQEPSVSSVAVNVVRD--SE 62
           ++ ++E +E  K+      ND+R+++ ++         SCS     S+++ +VV +  ++
Sbjct: 22  KKVLIEEEEDVKKPQQGKENDSRMAKDVV---------SCS-----SNISAHVVHEEVAD 81

Query: 63  NRSADSGESCATGIVGETKVAEDRKEREKSWVVDLKLGDGDICDGEIVCRICHLSSEQPW 122
           N +A S     + I         + + ++   +DL         GE +CRICH  S+Q  
Sbjct: 82  NVTAVSCNEAESDI--------SKAKAKEFHTIDLS------GVGERICRICHFGSDQSP 141

Query: 123 KFPFF--AAKTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICEICGEIANNIRGVGNE 182
           +      +   +LI +GC CK EL +AH +C EAWFKL+GN +CEICG  A N+      
Sbjct: 142 EASGDDKSVSPELIEIGCKCKNELGLAHFHCAEAWFKLRGNSVCEICGCTAKNV----TV 201

Query: 183 SFMEEWKDGRMNANALDSADRSAEGCWHGQPLCNFLMACLVIAFVLPWFFR 230
             ME+W   R   N LD   R       GQ  C F++  L I  +L WFF+
Sbjct: 202 RLMEDWSGER--DNTLDGRRRRG----RGQSCCIFMVFLLTI-LLLHWFFK 213

[Close]

BLAST of Spo09316.1 vs. TAIR (Arabidopsis)
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 6.600e-19
Identity = 58/171 (33.92%), Postives = 79/171 (46.20%), Query Frame = 1


		  
Query: 69  SCATGIVGETKVAEDRKEREKSWVVDLKLGDGDICDG-EIVCRICHLSSEQPWKFPFFAA 128
           S      GE ++A+D  +   +  V      G I    E  CRICHL  E          
Sbjct: 41  SAVRSFCGEFEIADDLDDETDTESV----ASGSIRGSPEKDCRICHLGLESSRH-----E 100

Query: 129 KTDLIMLGCGCKGELSVAHSYCGEAWFKLKGNRICEICGEIANNIRGVGNE---SFMEEW 188
             D ++LGC CK +L   H  C + WFK+KGN+ CEIC  IA N   V NE   + +E  
Sbjct: 101 CGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTCEICRSIAQNFFKVDNEIGQTTVETN 160

Query: 189 KDGRMNANA---LDSADRSAEGCWHGQPLCNFLMACLVIAFVLPWFFRFSM 233
            D     N    + ++D        G    NFL+ C+V AFV+ WFF F++
Sbjct: 161 VDDVEAGNTPTMVATSDSDDRRLCRGNRFLNFLLTCMVCAFVISWFFHFNL 202

The following BLAST results are available for this feature:

BLAST of Spo09316.1 vs. NCBI nr
BLAST of Spo09316.1 vs. UniProtKB/TrEMBL
BLAST of Spo09316.1 vs. ExPASy Swiss-Prot
BLAST of Spo09316.1 vs. TAIR (Arabidopsis)

BLAST of Spo09316.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902188804\|gb\|KNA11227.1\|	8.4e-133	100.	hypothetical protein SOVF_1371...	[more]
gi\|731349886\|ref\|XP_010686228.1\|	2.8e-80	67.3	PREDICTED: uncharacterized pro...	[more]
gi\|984697143\|gb\|AMB72435.1\|	3.8e-61	54.2	zinc-finger protein [Mesembrya...	[more]
gi\|565403377\|ref\|XP_006367137.1\|	2.3e-45	50.5	PREDICTED: uncharacterized pro...	[more]
gi\|802786978\|ref\|XP_012091806.1\|	3.0e-45	54.7	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo09316.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QVC1_SPIOL	5.8e-133	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8EN58_BETVU	2.0e-80	67.3	Uncharacterized protein OS=Bet...	[more]
A0A109R6M0_MESCR	2.7e-61	54.2	Zinc-finger protein OS=Mesembr...	[more]
A0A0V0HNM8_SOLCH	2.4e-46	51.5	Putative E3 ubiquitin-protein ...	[more]
M1CJG9_SOLTU	1.6e-45	50.5	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo09316.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo09316.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT5G05830.1	1.9e-26	36.1	RING/FYVE/PHD zinc finger supe...	[more]
AT5G59000.1	8.3e-22	47.0	RING/FYVE/PHD zinc finger supe...	[more]
AT2G37950.1	7.8e-20	37.3	RING/FYVE/PHD zinc finger supe...	[more]
AT2G34200.1	3.9e-19	30.7	RING/FYVE/PHD zinc finger supe...	[more]
AT5G01070.2	6.6e-19	33.9	RING/FYVE/PHD zinc finger supe...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 109..165 score: 1.
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 108..166 score: 1.1
IPR011016	Zinc finger, RING-CH-type	PROFILE	PS51292	ZF_RING_CH	coord: 101..172 score: 17
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 105..167 score: 5.2
None	No IPR available	PANTHER	PTHR23012:SF76	SUBFAMILY NOT NAMED	coord: 71..233 score: 2.1E-63coord: 1..29 score: 2.1
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 106..168 score: 3.8

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding