Spo09452.1 (mRNA)

Overview
NameSpo09452.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_121 : 103105 .. 105561 (-)
Sequence length1044
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGTTTTCCCGGGTAATGAAAGAACGCAGGCACATAGCGGAAGTTTTCACATTGGCGCAAACTTCTGCATAGAGAATCGAGCTAGGAGCCTCCATTGTTTGTATCGCCTCAGCAGGTTAGCATCTACTTCATTCTTTCTCTCTCCTCAACTTCGCTCCTTCTCCTCTCTTCGCCGCCTCTCATCACGACGCAGAAGCTTGATAACCATGGTGCGACAACTGAAGAGAAGGTTATGGCACCGTTAGGCTCGTGGAAGTCGCCGATCACTGTTGAAGTTATGAAGTTATCGCTGTCGTTAAGAAGATCTTCGGTGGAATCGCCGTCCACGGTCATGGCCACTTTTTTGCTTGAATCTCGTCACAAATCTTGTATTATTTCTTCCCTTTTCTAACCGATTAATCAATTTTTTCAGTTATGTCGGTAATTTCTTGTTGTTGATTGATCGATGTATTATCTGTTTATTGCTTATTGATCTGTTTTGCCGATTGTCGGATTATTAGGGTTTATGGTTATGGAGTGTGTTGAATCATGATTTTTTGTGATGGGTTACTGTAATCGATGTCGTTTTTAGTATCAGCATTGGTTGAAATTGTTAATTGTTTTTATTGATTTCTGTTTGGAGAAATTTGATCATCGTTAATGTAAATCATGTCAATATCCGCATTTATATGTTTGGATTGAATTGTTGTTTTGTTATTCTTATTGAAATAGATCTTATTGTGTGAAGGAGGTAACTCTCCCTTAAAATTGAGTGTACCTTCTTCCTTTCTCTCTCTCTCCCAATTCCTATTTTTCTTTTGTGGGTTTTTTTGTCAAGGTTTTGATTTTAATTTCATCGAATTAAATGACAATAGGTGAGAATCATCTGTAAAGGATTCTGAATGATGTTCTGTTTTTAATTTCTTCTATTTTTTTAATTTGTGGTTGTTCTATTCTTTGATGTTCTGTGTTACAACTTGTTAATTGCTGTGATGTTGGTGTAGAGCTGGTTCAGTTATCTGTAGGCTGTAGCATGTTGTTTTTGGTATAATTCAGATCAATAGCAAATCAAGTCAACTTTAGTTAAGTTGGTGCGTTTGTCTGGAAGCTGCAGTAGTGTGGTGTTGGTTAAGGTATGAAGGAAGTATTATCTAACTTGTTAAATTTTATAAAGCTCTTTTCCCGTTTAGGCTTATTTGATTATGACTTTCTATTCTTTTCATTCATAAATCTGAATTATAAAAGGTGTACTCTTATCCTTTAAACTAGGAAGATGTTACAATAAGGTATACATTTGTCCCTTTTACGTTACACTTTCATGTTTATAGTGGTCAGGTTTGTAAGTATGTAAAGGACCGAAGGTTCAAATCTCACTTGTTGATGTGTCCTGTGTTAAAATTAGATTAAAACAGATGCACTTGTTTAGCGTTTAGCTTTGAAACTCAAGTATTTTCGAGGTAGCAGTCTTATTAAGAATTGTTTGTGGCTGTTGAAATTGCATTCAGTTGATCTAAAAGAGTAAATTCCCAGCTGTACGTAGCTTGCTTCATTTGAATTGAAATCAAGTTTCTACACTCCTACAAGGTTTTCAACATTTTTAACCAATTCCAGGTATGATCTCTCTGTAATTGTACGGTTTTGTCTTCCTCGAAATTCTACAGACTGAAATTTATTTTTCGTTTCCATATGCCCAAGTGCAATTGAGCTTGTACTTGTCTTATACTTAGATTTTTTATAGTCTCAACGTTTTGTTAACTTTGTATCTTTTATTTTGTTGCTATATATAAATTCTTCTCTTATTATTGTGTAGACGAGGGGTGCAATTGAGTGAAAGTGCGGTTAGGTGCCTGGGAATTATGGTTTGGGCAGTCAGGGACTTCATTAGCGTGTCCTTGGGTACTGGATAGTTGTCACGAAGGCGAGGCTGAAAATTGCTTCAAGCAGTTTTGATTAGTTCAAACATGAGTTGTTATTTTGTGTTTAAGTACGTGTTCAAGTACTTGTGCTTGCGTGCAGCTGGAAATATATAGGAATATTGTAAGATGCGGAATGCCCAAATTTGATAGTATTTTCATCATATAATATTTTATGAATGAAAGTGATTTTTTTAATGTTCTCTTACTGAATTCTTTTAGTTTTTGGATGTCTCTGAAGAGTGGAGAAGCTTACAACCTCAACTCCGACAATGGAGACAAGTTATAGATTAGTATCTTTGACGTAGCTAGTTTTTTTTTTTTGTTTCTCTGTCTAAACATACGATTGTATATTTAGAATTAAGTTTTGCAACTTACGCATTAGATCTTATTGTATCAATAAGACATTCAGTTTAGGAACTCGGATATGAGATTATTTTGTATTAGCTCACTTAGCTAGTATGGATGATACTTTATTTGACTCTATTTGATTTCACTGTCAAATTTATTGTGATTAATGAAGTTTCTATATTTTACTTTTTTTTAATATCCAATACCTTTTAAA

mRNA sequence

GGGTTTTCCCGGGTAATGAAAGAACGCAGGCACATAGCGGAAGTTTTCACATTGGCGCAAACTTCTGCATAGAGAATCGAGCTAGGAGCCTCCATTGTTTGTATCGCCTCAGCAGGTTAGCATCTACTTCATTCTTTCTCTCTCCTCAACTTCGCTCCTTCTCCTCTCTTCGCCGCCTCTCATCACGACGCAGAAGCTTGATAACCATGGTGCGACAACTGAAGAGAAGGTTATGGCACCGTTAGGCTCGTGGAAGTCGCCGATCACTGTTGAAGTTATGAAGTTATCGCTGTCGTTAAGAAGATCTTCGGTGGAATCGCCGTCCACGGTCATGGCCACTTTTTTGCTTGAATCTCGTCACAAATCTTTTGATCTAAAAGAGTAAATTCCCAGCTGTACGTAGCTTGCTTCATTTGAATTGAAATCAAGTTTCTACACTCCTACAAGGTTTTCAACATTTTTAACCAATTCCAGACGAGGGGTGCAATTGAGTGAAAGTGCGGTTAGGTGCCTGGGAATTATGGTTTGGGCAGTCAGGGACTTCATTAGCGTGTCCTTGGGTACTGGATAGTTGTCACGAAGGCGAGGCTGAAAATTGCTTCAAGCAGTTTTGATTAGTTCAAACATGAGTTGTTATTTTGTGTTTAAGTACGTGTTCAAGTACTTGTGCTTGCGTGCAGCTGGAAATATATAGGAATATTTTTTTGGATGTCTCTGAAGAGTGGAGAAGCTTACAACCTCAACTCCGACAATGGAGACAAGTTATAGATTAGTATCTTTGACGTAGCTAGTTTTTTTTTTTTGTTTCTCTGTCTAAACATACGATTGTATATTTAGAATTAAGTTTTGCAACTTACGCATTAGATCTTATTGTATCAATAAGACATTCAGTTTAGGAACTCGGATATGAGATTATTTTGTATTAGCTCACTTAGCTAGTATGGATGATACTTTATTTGACTCTATTTGATTTCACTGTCAAATTTATTGTGATTAATGAAGTTTCTATATTTTACTTTTTTTTAATATCCAATACCTTTTAAA

Coding sequence (CDS)

ATGGCACCGTTAGGCTCGTGGAAGTCGCCGATCACTGTTGAAGTTATGAAGTTATCGCTGTCGTTAAGAAGATCTTCGGTGGAATCGCCGTCCACGGTCATGGCCACTTTTTTGCTTGAATCTCGTCACAAATCTTTTGATCTAAAAGAGTAA

Protein sequence

MAPLGSWKSPITVEVMKLSLSLRRSSVESPSTVMATFLLESRHKSFDLKE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo09452Spo09452gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo09452.1Spo09452.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo09452.1.utr5p.1Spo09452.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo09452.1.CDS.2Spo09452.1.CDS.2CDS
Spo09452.1.CDS.1Spo09452.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo09452.1.utr3p.3Spo09452.1.utr3p.3three_prime_UTR
Spo09452.1.utr3p.2Spo09452.1.utr3p.2three_prime_UTR
Spo09452.1.utr3p.1Spo09452.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo09452.1.exon.4Spo09452.1.exon.4exon
Spo09452.1.exon.3Spo09452.1.exon.3exon
Spo09452.1.exon.2Spo09452.1.exon.2exon
Spo09452.1.exon.1Spo09452.1.exon.1exon


Homology
[Close]
BLAST of Spo09452.1 vs. NCBI nr
Match: gi|902203411|gb|KNA14539.1| (hypothetical protein SOVF_105620, partial [Spinacia oleracea])

HSP 1 Score: 96.3 bits (238), Expect = 1.600e-17
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 

		  

Query: 1  MAPLGSWKSPITVEVMKLSLSLRRSSVESPSTVMATFLLESRHKSFDLKE 51
          MAPLGSWKSPITVEVMKLSLSLRRSSVESPSTVMATFLLESRHKSFDLKE
Sbjct: 41 MAPLGSWKSPITVEVMKLSLSLRRSSVESPSTVMATFLLESRHKSFDLKE 90
[Close]
BLAST of Spo09452.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6G3_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_105620 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.100e-17
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 1 

		  

Query: 1  MAPLGSWKSPITVEVMKLSLSLRRSSVESPSTVMATFLLESRHKSFDLKE 51
          MAPLGSWKSPITVEVMKLSLSLRRSSVESPSTVMATFLLESRHKSFDLKE
Sbjct: 41 MAPLGSWKSPITVEVMKLSLSLRRSSVESPSTVMATFLLESRHKSFDLKE 90
The following BLAST results are available for this feature:
BLAST of Spo09452.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902203411|gb|KNA14539.1|1.6e-17100.hypothetical protein SOVF_1056... [more]
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BLAST of Spo09452.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9R6G3_SPIOL1.1e-17100.Uncharacterized protein (Fragm... [more]
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BLAST of Spo09452.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo09452.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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