Spo09460.1 (mRNA) | SpinachBase

Overview


Name	Spo09460.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L18, chloroplastic
Location	chr3 : 17639630 .. 17643411 (-)
Sequence length	1466

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGTTCATTTAGATTTGAAATGTATGTTCATTTTCTATATATTCTTTCGGTATAAATAATATGATCTTTATATTTAAATTAAATGTTCATTTAAAAATTGTACACCCAGATGCATAAATGATAAATCACATTTTGCCCCAACACCCAAAAAAGAACCCAAAAAAATTAAAAATAATAAATAAAATAAAGGATAAGGTGGCTAACGATAAAAAGGCGGGGGAATGGCAATGAAGAAGATAAACCAGAAAATATAGAAGAGATAGGAGCAAAGAGAGAAGTGAGCAAAAAAGCTCAGAAAATTTTCAGGCATGGCTGCGGCAACATCACTGTCATTCTTCCATAGCACTTTAGCATCTTCTTCTTCTTCTTCCGTGCAACAACTGTCATTGCCGCCGAAGTTCGTCAATTTCCGCCCACAAACCCTCCCACTCATCCAAGCTAAGGCCCACACTCGCCGCGAAGACCGCACTGCCCGCCATGTTCGAATTAGGAAGAAGGTAATTTACCACTTTTCTCTTTTAAATATTCATCAATTTATTTTTCAAAAAAATTCTGGGTTTGTTTAGCTTCTGGGGTTTGACCCTTTGCCTTCAATTTTTGTTGGGTTTTGAAATGTGATTGTGAAAATTTCATTTAGTTGTATGTGGCAACATTTTTGCTAGATGAAGTGAATTGTGATAGTTGGTCATTTTGAAGTTGAATTTTAGGGTCTTGATGATAATGAAGAATGTGGGAGTTAAAGATTAGTGTATGGTTCTTGGTGAGAGTGTGAGATTGGTTTAGGAATCGAAGTGAATTATGAAATTTTGTCAATTGAAAGTTAAGTTTTAGTGAGTTTAGAGTTTTGATGAATATGACCCGAAAAATTAGAAGTTGTTGGTGTGTGGAGTGGAGTGGGATGAAAAAGGTGTGACCTATAAGATAATGCAAGGGAAAGTTAGTTTAGAAATGTTTTGTGCATTGTGATTTACTGATTTTGATAGCCGCAATCATGTGTTAGGAGCATAATGTTCATCTTGTGACTGGAAAGCTCTCTAGATTGGGGAGGTTTCATGTGAGTGAAAGATGTGGCAGATGCATATAAATGACCTAATGAATTGAATGTTGAGTGTTCTTTGCTTCTCGTGTCTGTTATTGTTGGTAGTCTATCGAGGGTCTATGTTTTGGTGTGTGCGAAGTGTTGGTTTCTAACATGTGGTGCAAGATGAGCTTTGCATTCTTCACCATCTGAAGGATTCATGAGGTAGGCTACAAGATAACCTCTTTCTGCAATCATTGGAGTATCATAGAAGTAGTATTGAAGAACTTGATGAGCTATTTCCACCTCTAGTTTGTTATACTCGTAGTCTCAACAGTAGGACACTTAATGCAATAGTTGAAATTTCTAATGGTATTAATGTATGATGTATCATGAGTTCATGACAATATCATTATTTGAAGCTATTAGAATATTATACTTAGTAATAGAGCAAAGCTTAACGATTATCTAGTTTCTTTCCACGGTTCTACAATTGGGGAAGTCGACTACTTTTTTTAAGGAAGGAATGAGTGACTTAGAGTCTTGACAAATGCTATACATGCAAAACTATTTAGTGTAAGGATTAAGCTTTTTTGTAATCTACAAAAAAGTCATTTCAGAGGGATTATGTATCAGTTCAATCATACTTGATATTTGCTTTGAAGATAAAAAAGAGATATAATGAAGGTAAGGATATTAATGAGAGCAAAATAAAATGGTTTGTGCTAAACGTACTTATAGTGGTATCTCATATCCTGTTTGTTTGCACTTTTATCTGTCTCCTCAACCACCTGTGTCATGTGACCGAAGTCCAGCTAATGCTTAAAGCCAGATATTTTAACTGACTGTCATAGTAGTTGATTTGGGAAAGTAACCTGATAATAAGTGAGGGGTTTCAAAATAACTTAGCACCCCTAGTGATTCGATACAACTGGTCAAGTTGTAGAACACAATTTGTGATACACAAGCCTTTTTAGTGCTGAAAAATGAGATCATAACAGATTCATCATGAATATGGTATGGACTTGGAGCAGTTTATTTTTCTTTCTTGAATTGTTATAGATTTATAGTTTTTTCAAAGGAAGGTAACTAAGCGCATATAGTACTGCCAGCACTTGTTCAACCAACCCCCCCCCCCCCCCCNCCCCCCCTCTCTCTCTCTCTCCCTGCCTCTTCTTTATCTTTTTTTTGAACTTTTCTACTCAATTCTAATTCTTGTTTAATGTAACTTGTTTTTGGGCGTATAACTTCTGTATCTTGGAATCCAACTCTACTCTCTTGGGAGTTAACATCACACTTTCTTCCAACACTAATGTTTGATGTTCCTCAGGTAGAAGGGACACCAGAAAGGCCAAGACTCTGCGTTTTCCGCTCCAACAAGCATCTCTATGTGCAAGTGATTGATGATACTAAAATGCATACTCTTGCTGCAGCTTCTACAATGCAGAAAGCTATCTCAGAGAACATCGACTATTCTGCAGGTCCCACAGTTGTAAGTACACTGTCTCAGAGAACATTGCTTTGTTTTTTTCTGTATTTTTTCACAGGATTCTATAAGGGATAAAATAATCTTTGTTTCCTGGATTGCTTTACGTATCCAGTATGGCAGTATCCTTAAGAAACATGATAAAGTATGTTGAATTTGCTATGCTGGTTAAATCTATTATCACTATGTTCAATAATGAGATTTTGTTTGAAGCGACAATCAGCTGTTTCACGTACTTCTATTCCATACATTTCCATAGGGCGAGAACATTACTACCTCCATCCGTTAACAAGAAACCGGCCACATTTCTATTGGTTGCTCCAAACTTGTGGGCCACTTTCAGAAGTTGGTTTTTTTTTATACTGTTGACAGTCCTACATGGAATGCTTATCTTTGCTTTTGTTTGAAAAGAAATTTGGAGTTCATTTTTTTCTGGATTGTTATGCTGATTATAGTCTAATTCAATGACAGGAAGTGGCGCAGAAGATAGGTGAAATGATTGCCAAAAGTTGTTTGGAGAAAGGAATAACTAAGGTGGCCTTCGACCGAGGTGGTTACCCTTACCATGGTCGTGTTAAAGCCCTCGCTGATGCAGCCCGAGAACATGGCCTTGTATTCTGAAGCTAAAACTAGATTCCCCTTTCTGTGAGAGATTTTTCTTTTTTCCCAGTCTGTTTAGTTTCTCAGCTACTTAGCAAAGAATTTGTAGTTGAAACGTAAAAAGTCATTTATTTTTGGTACACTGAAAATGGTGTTGAGGAAGTATCATCGTTGTCAATTAATGTTCTGGTTTACTCATTTAAAGGTTTATTCCTTATTTTGATTAATTATTAAACTGTATGGGCAAACCTACTGTAACAATGCCATAGACACAGGCCTCACAATAGAGTTCAATAGGGGTTAGCAGGTATTAATCAAGGATCAGTGAAGTTCAGCATGGTTACTGCATATTTTCCAGGATGTTGAAACATATTTATACCTTTTTCTGTTTTGGTTTGTACAAAAAACATCAGGAGGATATACAATGTGGCTAGTATTTGAATTTAAAGGATACAGGTATATAATGCAATTCAGTCCTGAACTTTCAGGCGCTCAAGACTTTCAATTTCAATCACTAAGCTAAATCCTCATTATAGAGAGAATATCTTAAAGCAATATGGTTAGTATTCCGAATAAAATCGGATGACATCCAAGAAAATAACTTGTGCAGAGAATTTTTTTTCTTGTACACAAGTATTTACATCAATTTCCATTTCCCCAAAGTTCAAATCGCC

mRNA sequence

ATGTTTGTTCATTTAGATTTGAAATGTATGTTCATTTTCTATATATTCTTTCGGTATAAATAATATGATCTTTATATTTAAATTAAATGTTCATTTAAAAATTGTACACCCAGATGCATAAATGATAAATCACATTTTGCCCCAACACCCAAAAAAGAACCCAAAAAAATTAAAAATAATAAATAAAATAAAGGATAAGGTGGCTAACGATAAAAAGGCGGGGGAATGGCAATGAAGAAGATAAACCAGAAAATATAGAAGAGATAGGAGCAAAGAGAGAAGTGAGCAAAAAAGCTCAGAAAATTTTCAGGCATGGCTGCGGCAACATCACTGTCATTCTTCCATAGCACTTTAGCATCTTCTTCTTCTTCTTCCGTGCAACAACTGTCATTGCCGCCGAAGTTCGTCAATTTCCGCCCACAAACCCTCCCACTCATCCAAGCTAAGGCCCACACTCGCCGCGAAGACCGCACTGCCCGCCATGTTCGAATTAGGAAGAAGGTAGAAGGGACACCAGAAAGGCCAAGACTCTGCGTTTTCCGCTCCAACAAGCATCTCTATGTGCAAGTGATTGATGATACTAAAATGCATACTCTTGCTGCAGCTTCTACAATGCAGAAAGCTATCTCAGAGAACATCGACTATTCTGCAGGTCCCACAGTTGAAGTGGCGCAGAAGATAGGTGAAATGATTGCCAAAAGTTGTTTGGAGAAAGGAATAACTAAGGTGGCCTTCGACCGAGGTGGTTACCCTTACCATGGTCGTGTTAAAGCCCTCGCTGATGCAGCCCGAGAACATGGCCTTGTATTCTGAAGCTAAAACTAGATTCCCCTTTCTGTGAGAGATTTTTCTTTTTTCCCAGTCTGTTTAGTTTCTCAGCTACTTAGCAAAGAATTTGTAGTTGAAACGTAAAAAGTCATTTATTTTTGGTACACTGAAAATGGTGTTGAGGAAGTATCATCGTTGTCAATTAATGTTCTGGTTTACTCATTTAAAGGTTTATTCCTTATTTTGATTAATTATTAAACTGTATGGGCAAACCTACTGTAACAATGCCATAGACACAGGCCTCACAATAGAGTTCAATAGGGGTTAGCAGGTATTAATCAAGGATCAGTGAAGTTCAGCATGGTTACTGCATATTTTCCAGGATGTTGAAACATATTTATACCTTTTTCTGTTTTGGTTTGTACAAAAAACATCAGGAGGATATACAATGTGGCTAGTATTTGAATTTAAAGGATACAGGTATATAATGCAATTCAGTCCTGAACTTTCAGGCGCTCAAGACTTTCAATTTCAATCACTAAGCTAAATCCTCATTATAGAGAGAATATCTTAAAGCAATATGGTTAGTATTCCGAATAAAATCGGATGACATCCAAGAAAATAACTTGTGCAGAGAATTTTTTTTCTTGTACACAAGTATTTACATCAATTTCCATTTCCCCAAAGTTCAAATCGCC

Coding sequence (CDS)

ATGGCTGCGGCAACATCACTGTCATTCTTCCATAGCACTTTAGCATCTTCTTCTTCTTCTTCCGTGCAACAACTGTCATTGCCGCCGAAGTTCGTCAATTTCCGCCCACAAACCCTCCCACTCATCCAAGCTAAGGCCCACACTCGCCGCGAAGACCGCACTGCCCGCCATGTTCGAATTAGGAAGAAGGTAGAAGGGACACCAGAAAGGCCAAGACTCTGCGTTTTCCGCTCCAACAAGCATCTCTATGTGCAAGTGATTGATGATACTAAAATGCATACTCTTGCTGCAGCTTCTACAATGCAGAAAGCTATCTCAGAGAACATCGACTATTCTGCAGGTCCCACAGTTGAAGTGGCGCAGAAGATAGGTGAAATGATTGCCAAAAGTTGTTTGGAGAAAGGAATAACTAAGGTGGCCTTCGACCGAGGTGGTTACCCTTACCATGGTCGTGTTAAAGCCCTCGCTGATGCAGCCCGAGAACATGGCCTTGTATTCTGA

Protein sequence

MAAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLPLIQAKAHTRREDRTARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo09460	Spo09460	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo09460.1	Spo09460.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09460.1.utr5p.1	Spo09460.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09460.1.CDS.3	Spo09460.1.CDS.3	CDS
Spo09460.1.CDS.2	Spo09460.1.CDS.2	CDS
Spo09460.1.CDS.1	Spo09460.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09460.1.utr3p.1	Spo09460.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09460.1.exon.3	Spo09460.1.exon.3	exon
Spo09460.1.exon.2	Spo09460.1.exon.2	exon
Spo09460.1.exon.1	Spo09460.1.exon.1	exon

Homology

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BLAST of Spo09460.1 vs. NCBI nr
Match: gi|902176765|gb|KNA08833.1| (hypothetical protein SOVF_159210 [Spinacia oleracea])

HSP 1 Score: 321.6 bits (823), Expect = 7.900e-85
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1


		  
Query: 1   MAAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLPLIQAKAHTRREDRTARHVRI 60
           MAAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLPLIQAKAHTRREDRTARHVRI
Sbjct: 1   MAAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLPLIQAKAHTRREDRTARHVRI 60

Query: 61  RKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVA 120
           RKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVA
Sbjct: 61  RKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVA 120

Query: 121 QKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 167
           QKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF
Sbjct: 121 QKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 166

[Close]

BLAST of Spo09460.1 vs. NCBI nr
Match: gi|731364722|ref|XP_010694131.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 277.3 bits (708), Expect = 1.700e-71
Identity = 141/167 (84.43%), Postives = 155/167 (92.81%), Query Frame = 1


		  
Query: 1   MAAATSL-SFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLPLIQAKAHTRREDRTARHVR 60
           MAA+TSL SF HS+LA+SSS + QQ+S+PPKFV  RPQ LPLIQAKAHTRREDRTARHVR
Sbjct: 1   MAASTSLLSFSHSSLAASSSYAAQQISVPPKFVTLRPQNLPLIQAKAHTRREDRTARHVR 60

Query: 61  IRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEV 120
           +RKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLA+ASTMQK ISE   +++GPTVEV
Sbjct: 61  VRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEEASFTSGPTVEV 120

Query: 121 AQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 167
           AQK+GEMIAKSCL+KGITKVAFDRGGYPYHGRV+ALADAAREHGL F
Sbjct: 121 AQKVGEMIAKSCLDKGITKVAFDRGGYPYHGRVQALADAAREHGLQF 167

[Close]

BLAST of Spo09460.1 vs. NCBI nr
Match: gi|225432240|ref|XP_002270819.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic [Vitis vinifera])

HSP 1 Score: 239.2 bits (609), Expect = 5.200e-60
Identity = 125/163 (76.69%), Postives = 139/163 (85.28%), Query Frame = 1


		  
Query: 6   SLSFFHSTLASSSSSSVQQLSLPPKFVNFRP--QTLPLIQAKAHTRREDRTARHVRIRKK 65
           SLSF  S  ASS     QQL L PKF   +P   + P+I+AKA TRREDRTARHVRIRKK
Sbjct: 4   SLSFLQSAFASS-----QQLPLLPKFAAAKPLLPSFPIIEAKAKTRREDRTARHVRIRKK 63

Query: 66  VEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVAQKI 125
           VEGTPERPRLCVFRSNKHLYVQVIDD+KMHTLA+ASTMQK+ISE +DYS+ PT+EVA+K+
Sbjct: 64  VEGTPERPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKV 123

Query: 126 GEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 167
           GE+IA +CLEKGITKVAFDRGGYPYHGRVKALADAARE GL F
Sbjct: 124 GEVIASACLEKGITKVAFDRGGYPYHGRVKALADAAREKGLQF 161

[Close]

BLAST of Spo09460.1 vs. NCBI nr
Match: gi|702509127|ref|XP_010040376.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Eucalyptus grandis])

HSP 1 Score: 233.8 bits (595), Expect = 2.200e-58
Identity = 122/173 (70.52%), Postives = 139/173 (80.35%), Query Frame = 1


		  
Query: 1   MAAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLP-------LIQAKAHTRREDR 60
           MAA+TS+SF        SS +V  +S+ PKFV   P   P        ++A+A TRREDR
Sbjct: 1   MAASTSISFLSQNPFLGSSQNVLSVSICPKFVGTVPMQRPPQRQPSFAVEARAKTRREDR 60

Query: 61  TARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSA 120
            ARH RIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAA STMQK +SE  DYS+
Sbjct: 61  LARHSRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAVSTMQKLVSEESDYSS 120

Query: 121 GPTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 167
           GPT+EVA+++GE+IAKSCLEKGITKVAFDRGGYPYHGRV+ALA+AAREHGL F
Sbjct: 121 GPTIEVAKRVGEIIAKSCLEKGITKVAFDRGGYPYHGRVEALAEAAREHGLQF 173

[Close]

BLAST of Spo09460.1 vs. NCBI nr
Match: gi|720087122|ref|XP_010244056.1| (PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 233.8 bits (595), Expect = 2.200e-58
Identity = 122/161 (75.78%), Postives = 136/161 (84.47%), Query Frame = 1


		  
Query: 6   SLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLPLIQAKAHTRREDRTARHVRIRKKVE 65
           SLSF HS  ASS     QQL+L PKF+  +     +I+AKA TRREDR ARH RIRKKVE
Sbjct: 4   SLSFLHSAFASS-----QQLTLGPKFIAAKASPSLVIEAKATTRREDRLARHARIRKKVE 63

Query: 66  GTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVAQKIGE 125
           GTPERPRL VFRSNKH+YVQVIDDTKMHTLA+ASTMQK ISE  DYS+GPTVEVA++IGE
Sbjct: 64  GTPERPRLSVFRSNKHIYVQVIDDTKMHTLASASTMQKPISEEFDYSSGPTVEVAKRIGE 123

Query: 126 MIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 167
           +IAK+CLEKGI KVAFDRGGYPYHGRV+ALA+AAREHGL F
Sbjct: 124 IIAKNCLEKGIKKVAFDRGGYPYHGRVEALANAAREHGLQF 159

[Close]

BLAST of Spo09460.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QQ60_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_159210 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 5.500e-85
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 1


		  
Query: 1   MAAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLPLIQAKAHTRREDRTARHVRI 60
           MAAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLPLIQAKAHTRREDRTARHVRI
Sbjct: 1   MAAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLPLIQAKAHTRREDRTARHVRI 60

Query: 61  RKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVA 120
           RKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVA
Sbjct: 61  RKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVA 120

Query: 121 QKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 167
           QKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF
Sbjct: 121 QKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 166

[Close]

BLAST of Spo09460.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BF45_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g070550 PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.200e-71
Identity = 141/167 (84.43%), Postives = 155/167 (92.81%), Query Frame = 1


		  
Query: 1   MAAATSL-SFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLPLIQAKAHTRREDRTARHVR 60
           MAA+TSL SF HS+LA+SSS + QQ+S+PPKFV  RPQ LPLIQAKAHTRREDRTARHVR
Sbjct: 1   MAASTSLLSFSHSSLAASSSYAAQQISVPPKFVTLRPQNLPLIQAKAHTRREDRTARHVR 60

Query: 61  IRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEV 120
           +RKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLA+ASTMQK ISE   +++GPTVEV
Sbjct: 61  VRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISEEASFTSGPTVEV 120

Query: 121 AQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 167
           AQK+GEMIAKSCL+KGITKVAFDRGGYPYHGRV+ALADAAREHGL F
Sbjct: 121 AQKVGEMIAKSCLDKGITKVAFDRGGYPYHGRVQALADAAREHGLQF 167

[Close]

BLAST of Spo09460.1 vs. UniProtKB/TrEMBL
Match: A5BNB6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01140 PE=3 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.600e-60
Identity = 125/163 (76.69%), Postives = 139/163 (85.28%), Query Frame = 1


		  
Query: 6   SLSFFHSTLASSSSSSVQQLSLPPKFVNFRP--QTLPLIQAKAHTRREDRTARHVRIRKK 65
           SLSF  S  ASS     QQL L PKF   +P   + P+I+AKA TRREDRTARHVRIRKK
Sbjct: 4   SLSFLQSAFASS-----QQLPLLPKFAAAKPLLPSFPIIEAKAKTRREDRTARHVRIRKK 63

Query: 66  VEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVAQKI 125
           VEGTPERPRLCVFRSNKHLYVQVIDD+KMHTLA+ASTMQK+ISE +DYS+ PT+EVA+K+
Sbjct: 64  VEGTPERPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKV 123

Query: 126 GEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 167
           GE+IA +CLEKGITKVAFDRGGYPYHGRVKALADAARE GL F
Sbjct: 124 GEVIASACLEKGITKVAFDRGGYPYHGRVKALADAAREKGLQF 161

[Close]

BLAST of Spo09460.1 vs. UniProtKB/TrEMBL
Match: A0A058ZTZ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01079 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.500e-58
Identity = 122/173 (70.52%), Postives = 139/173 (80.35%), Query Frame = 1


		  
Query: 1   MAAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLP-------LIQAKAHTRREDR 60
           MAA+TS+SF        SS +V  +S+ PKFV   P   P        ++A+A TRREDR
Sbjct: 1   MAASTSISFLSQNPFLGSSQNVLSVSICPKFVGTVPMQRPPQRQPSFAVEARAKTRREDR 60

Query: 61  TARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSA 120
            ARH RIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAA STMQK +SE  DYS+
Sbjct: 61  LARHSRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAVSTMQKLVSEESDYSS 120

Query: 121 GPTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 167
           GPT+EVA+++GE+IAKSCLEKGITKVAFDRGGYPYHGRV+ALA+AAREHGL F
Sbjct: 121 GPTIEVAKRVGEIIAKSCLEKGITKVAFDRGGYPYHGRVEALAEAAREHGLQF 173

[Close]

BLAST of Spo09460.1 vs. UniProtKB/TrEMBL
Match: A0A059D442_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02183 PE=3 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 9.800e-58
Identity = 120/173 (69.36%), Postives = 138/173 (79.77%), Query Frame = 1


		  
Query: 1   MAAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLP-------LIQAKAHTRREDR 60
           MAA+TS+SF        SS +V  +S+ PKFV   P   P        ++A+  TRREDR
Sbjct: 1   MAASTSISFLSQNPFLGSSQNVLSVSICPKFVGTVPMQRPPQRQPPFAVEARVKTRREDR 60

Query: 61  TARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSA 120
            ARH RIRKKV+GTPERPRLCVFRSNKHLYVQVIDDTKMHTLAA STMQK +SE  DYS+
Sbjct: 61  LARHSRIRKKVQGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAVSTMQKLVSEESDYSS 120

Query: 121 GPTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 167
           GPT+EVA+++GE+IAKSCLEKGITKVAFDRGGYPYHGRV+ALA+AAREHGL F
Sbjct: 121 GPTIEVAKRVGEIIAKSCLEKGITKVAFDRGGYPYHGRVEALAEAAREHGLQF 173

[Close]

BLAST of Spo09460.1 vs. ExPASy Swiss-Prot
Match: RK18_ARATH (50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 2.300e-52
Identity = 106/149 (71.14%), Postives = 120/149 (80.54%), Query Frame = 1


		  
Query: 18  SSSSVQQLSLPPKFVNFRPQTLPLIQAKAHTRREDRTARHVRIRKKVEGTPERPRLCVFR 77
           SSSS+Q  S+             +++AK  T  EDR ARH RIRKKV GT ERPRLCVFR
Sbjct: 35  SSSSLQSRSM-------------VVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFR 94

Query: 78  SNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVAQKIGEMIAKSCLEKGIT 137
           SNKHLYVQVIDDTKMHTLA+AST QK ISE  DY++GPT+EVA+K+GE+IAKSCLEKGIT
Sbjct: 95  SNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGIT 154

Query: 138 KVAFDRGGYPYHGRVKALADAAREHGLVF 167
           KVAFDRGGYPYHGR++ALA AAREHGL F
Sbjct: 155 KVAFDRGGYPYHGRIEALAAAAREHGLQF 170

[Close]

BLAST of Spo09460.1 vs. ExPASy Swiss-Prot
Match: RK18_ORYSJ (50S ribosomal protein L18, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL18 PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 1.700e-47
Identity = 100/158 (63.29%), Postives = 121/158 (76.58%), Query Frame = 1


		  
Query: 10  FHSTLASSSSSSVQQLSLP-PKFVNFRPQTLPLIQAKAHTRREDRTARHVRIRKKVEGTP 69
           F +T++ S    +  +S P P     R   + + + K  T + DR ARHVR+RKKV GT 
Sbjct: 13  FAATVSGSLGIPIPAISAPSPSQARRRASLVVVAKVKVSTPQADRIARHVRLRKKVSGTT 72

Query: 70  ERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVAQKIGEMIA 129
           ERPRL VFRSNKHLY QVIDDTK  TL +ASTM K++S++++YSAGPTVEVAQKIGE+IA
Sbjct: 73  ERPRLSVFRSNKHLYAQVIDDTKSCTLVSASTMHKSLSKDLEYSAGPTVEVAQKIGEVIA 132

Query: 130 KSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGLVF 167
           KSCLEKGITKV FDRGG+ YHGR+KALADAARE+GL F
Sbjct: 133 KSCLEKGITKVVFDRGGFLYHGRIKALADAARENGLDF 170

[Close]

BLAST of Spo09460.1 vs. ExPASy Swiss-Prot
Match: RL18_THEMA (50S ribosomal protein L18 OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=rplR PE=3 SV=2)

HSP 1 Score: 146.4 bits (368), Expect = 2.900e-34
Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 1


		  
Query: 45  KAHTRREDRTARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKA 104
           K  +++E R  RH R+RKKV GTPERPRLCVFRSNKH+Y Q+IDDT  HTL +AST+   
Sbjct: 3   KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPE 62

Query: 105 ISENIDYSAGPTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGL 164
           + E +  +    VE A+++G +I K  LEKGI KV FDRGGY YHGRVKALAD ARE GL
Sbjct: 63  LREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGL 122

Query: 165 VF 167
            F
Sbjct: 123 EF 122

[Close]

BLAST of Spo09460.1 vs. ExPASy Swiss-Prot
Match: RL18_THEP1 (50S ribosomal protein L18 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplR PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.900e-34
Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 1


		  
Query: 45  KAHTRREDRTARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKA 104
           K  +++E R  RH R+RKKV GTPERPRLCVFRSNKH+Y Q+IDDT  HTL +AST+   
Sbjct: 3   KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPE 62

Query: 105 ISENIDYSAGPTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGL 164
           + E +  +    VE A+++G +I K  LEKGI KV FDRGGY YHGRVKALAD ARE GL
Sbjct: 63  LREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGL 122

Query: 165 VF 167
            F
Sbjct: 123 EF 122

[Close]

BLAST of Spo09460.1 vs. ExPASy Swiss-Prot
Match: RL18_THESQ (50S ribosomal protein L18 OS=Thermotoga sp. (strain RQ2) GN=rplR PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.900e-34
Identity = 74/122 (60.66%), Postives = 89/122 (72.95%), Query Frame = 1


		  
Query: 45  KAHTRREDRTARHVRIRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKA 104
           K  +++E R  RH R+RKKV GTPERPRLCVFRSNKH+Y Q+IDDT  HTL +AST+   
Sbjct: 3   KKESKKEQRLRRHRRVRKKVFGTPERPRLCVFRSNKHIYAQIIDDTIGHTLVSASTLDPE 62

Query: 105 ISENIDYSAGPTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHGRVKALADAAREHGL 164
           + E +  +    VE A+++G +I K  LEKGI KV FDRGGY YHGRVKALAD ARE GL
Sbjct: 63  LREKLQKTW--NVEAAKEVGLLIGKRALEKGIKKVVFDRGGYKYHGRVKALADGAREAGL 122

Query: 165 VF 167
            F
Sbjct: 123 EF 122

[Close]

BLAST of Spo09460.1 vs. TAIR (Arabidopsis)
Match: AT1G48350.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 206.5 bits (524), Expect = 1.300e-53
Identity = 106/149 (71.14%), Postives = 120/149 (80.54%), Query Frame = 1


		  
Query: 18  SSSSVQQLSLPPKFVNFRPQTLPLIQAKAHTRREDRTARHVRIRKKVEGTPERPRLCVFR 77
           SSSS+Q  S+             +++AK  T  EDR ARH RIRKKV GT ERPRLCVFR
Sbjct: 35  SSSSLQSRSM-------------VVEAKTKTSSEDRIARHSRIRKKVNGTTERPRLCVFR 94

Query: 78  SNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVAQKIGEMIAKSCLEKGIT 137
           SNKHLYVQVIDDTKMHTLA+AST QK ISE  DY++GPT+EVA+K+GE+IAKSCLEKGIT
Sbjct: 95  SNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGIT 154

Query: 138 KVAFDRGGYPYHGRVKALADAAREHGLVF 167
           KVAFDRGGYPYHGR++ALA AAREHGL F
Sbjct: 155 KVAFDRGGYPYHGRIEALAAAAREHGLQF 170

[Close]

BLAST of Spo09460.1 vs. TAIR (Arabidopsis)
Match: AT1G14205.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.500e-12
Identity = 53/167 (31.74%), Postives = 88/167 (52.69%), Query Frame = 1


		  
Query: 1   MAAATSLSFFHSTLASSSSSSVQQLSLPPKFVNFRPQTLP-LIQAKAHTRREDRTARHVR 60
           MAA TSLS     ++    + ++     P  +       P +I+A+ +TR E    R+ R
Sbjct: 1   MAALTSLSTVQFRVSDILGTRLKPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRNRR 60

Query: 61  IRKKVEGTPERPRLCVFRSNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEV 120
            RKK  GT  +PRL VF S+K LY  ++DD     L  AST+QK+I  +   +    +E 
Sbjct: 61  SRKKFTGTQTKPRLSVFCSDKQLYAMLVDDFNKKCLFYASTLQKSIRGDPPCT---VIEA 120

Query: 121 AQKIGEMIAKSCLEKGITKV-AFDRGGYPYHGRVKALADAAREHGLV 166
           A+++GE + K+ ++  I ++ ++DR G     R++A   A  +HG +
Sbjct: 121 AKRVGEELIKASIDLKINEISSYDRNGNKRGERMQAFEIAIAQHGFL 164

[Close]

BLAST of Spo09460.1 vs. TAIR (Arabidopsis)
Match: AT3G17626.1 (structural constituent of ribosome)

HSP 1 Score: 58.2 bits (139), Expect = 5.800e-9
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1


		  
Query: 114 GPTVEVAQKIGEMIAKSCLEKGITKVAFDRGGYPYHG 151
           G T+E+A+K+GE+I KSC+E GITKVAFDR  Y YHG
Sbjct: 11  GSTIEMAKKVGEVIEKSCVENGITKVAFDRAIYTYHG 47

[Close]

BLAST of Spo09460.1 vs. TAIR (Arabidopsis)
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.600e-6
Identity = 30/88 (34.09%), Postives = 48/88 (54.55%), Query Frame = 1


		  
Query: 78  SNKHLYVQVIDDTKMHTLAAASTMQKAISENIDYSAGPTVEVAQKIGEMIAKSCLEKGIT 137
           +NK ++ QVI         +AS+ +KA+ E +D +    V  A KIG+++ +  L K I 
Sbjct: 26  TNKFVHAQVIHSPTATVACSASSQEKALRETMDITRD--VAAASKIGKILGERLLMKDIP 85

Query: 138 KVAFD-RGGYPYHGRVKALADAAREHGL 165
            V    +    YHG+VKA+ D+ RE G+
Sbjct: 86  AVTIQMKKEQRYHGKVKAVIDSVREAGV 111

The following BLAST results are available for this feature:

BLAST of Spo09460.1 vs. NCBI nr
BLAST of Spo09460.1 vs. UniProtKB/TrEMBL
BLAST of Spo09460.1 vs. ExPASy Swiss-Prot
BLAST of Spo09460.1 vs. TAIR (Arabidopsis)

BLAST of Spo09460.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902176765\|gb\|KNA08833.1\|	7.9e-85	100.	hypothetical protein SOVF_1592...	[more]
gi\|731364722\|ref\|XP_010694131.1\|	1.7e-71	84.4	PREDICTED: 50S ribosomal prote...	[more]
gi\|225432240\|ref\|XP_002270819.1\|	5.2e-60	76.6	PREDICTED: 50S ribosomal prote...	[more]
gi\|702509127\|ref\|XP_010040376.1\|	2.2e-58	70.5	PREDICTED: 50S ribosomal prote...	[more]
gi\|720087122\|ref\|XP_010244056.1\|	2.2e-58	75.7	PREDICTED: 50S ribosomal prote...	[more]

BLAST of Spo09460.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QQ60_SPIOL	5.5e-85	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BF45_BETVU	1.2e-71	84.4	Uncharacterized protein OS=Bet...	[more]
A5BNB6_VITVI	3.6e-60	76.6	Putative uncharacterized prote...	[more]
A0A058ZTZ3_EUCGR	1.5e-58	70.5	Uncharacterized protein OS=Euc...	[more]
A0A059D442_EUCGR	9.8e-58	69.3	Uncharacterized protein OS=Euc...	[more]

BLAST of Spo09460.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RK18_ARATH	2.3e-52	71.1	50S ribosomal protein L18, chl...	[more]
RK18_ORYSJ	1.7e-47	63.2	50S ribosomal protein L18, chl...	[more]
RL18_THEMA	2.9e-34	60.6	50S ribosomal protein L18 OS=T...	[more]
RL18_THEP1	2.9e-34	60.6	50S ribosomal protein L18 OS=T...	[more]
RL18_THESQ	2.9e-34	60.6	50S ribosomal protein L18 OS=T...	[more]

BLAST of Spo09460.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4


Match Name	E-value	Identity	Description
AT1G48350.1	1.3e-53	71.1	Ribosomal L18p/L5e family prot...	[more]
AT1G14205.1	1.5e-12	31.7	Ribosomal L18p/L5e family prot...	[more]
AT3G17626.1	5.8e-9	67.5	structural constituent of ribo...	[more]
AT5G27820.1	1.6e-6	34.0	Ribosomal L18p/L5e family prot...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004389	Ribosomal protein L18, bacterial-type	HAMAP	MF_01337_B	Ribosomal_L18_B	coord: 48..166 score: 27
IPR004389	Ribosomal protein L18, bacterial-type	TIGRFAMs	TIGR00060	TIGR00060	coord: 50..166 score: 1.7
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 48..166 score: 4.7
None	No IPR available	GENE3D	3.30.420.100		coord: 66..166 score: 1.2
None	No IPR available	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 44..166 score: 3.5
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 49..164 score: 3.05

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0048653	anther development
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0007389	pattern specification process
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0010015	root morphogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding