Spo09487.1 (mRNA)

Overview
NameSpo09487.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 94655857 .. 94658267 (+)
Sequence length1131
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTATCTAAAACTCATACAAAAATTATCCACAAATATATCCAAAAAAAAACTGAGGTGGCTGGTCTTCCTCTATGAGCTGCATTCATAGTCATTCTCCATCCCTTCACTTGCTTAACCTGCAAAAGCATAAACAAAATGCTGAAAAATCAACCAATTTACAATATGGGTTTTTCTCCAGCTACTCAGCAAAGAGGCACTGTAACATTATATCCAAAGTTGCAGTTTTACCTTTGAATGTAGAAACTTTTCATACTTCTCTCACACTTGCTGTTGCTAAACCTGCTAATACTGAAGTTCTGTTCCAAACCAGGTTTGTTTCTCTTTTTACCCTTCGATCTCTTTCATTCAAGTATTTTTTTTTTTTTGTTCTACTATGAGGAGTTCCCACCGCCTTCGCCGTGTGGACTAATCTCCCGTACCTCGATGGGCAGCATCCCTCCCGGTTGAGATTTTTTCCATTCTCAAGGCTCAAATCCGAGACCTTGGTTAAGGAGCAAGAAGCTTTTAACCACTCATGCCAACCTCCATTGATTTTTATTCAAGTATTTGATAGTGTATTTGATAGTGTATTTGGTTGACGGTAATATATGATACAATGGTTAATTGTAATGAATTTGTGTAGTTTTGAAATAAAGTCACAAATATGTGTAGTATATACACTTTATGAAAGCAAACACATAATTGAAAGTAATGTTTTTACAGCCATTGACTTGAAATTTTGTTTATAAATTATACACCTCTGTCTCTTTTTGTTTTTTACGTTTTGTATTTTTCACGCGTTTTAACGAATAATTAATTTGCATTGAAATCCCTCAATTTTTTTATTTAAACGAAATAAATTACGTTGATTTATAATGTTTTCACTTTTATCAAAATTCTGATATTGGGAAATGAAAAAAAAATTAAAGTCCCAATGGAAAAGTGTGAGAGATTAAATGACCCAATGAATTTGATTGGTTAAAATAATAATTGGACACAAATTTTGATAGAATACTAAGTTATTTATGTGATAATATAAAAGGAAATGTAAAGAACATTTTAAAATACCAAAAAAAGGAAAACGTAAAAAACAAAAAGAGACGGATGGAGTAAAAATTTATTACCATTATTAATCTCATAATCTCATTTATTATTGCCTATCAAATGAGTTGTTATTGTCATGCATCACACATATAACACATTTATCTTCGATGCATGAGTAATTAAGAAAAATGATTAAAATTTAAAATCAATTGTTCGTGATAAGTGATAAAGGTCACATCACATGTTAATATGTTATTACTGAATTCTTTTGTTTCATAATCCAAAGTACAGTGGATATCAACTAGCTTAGTTGGTAAAGTTTTGAGAGGTAATACTTGTACCCAAGATCTGGGATTGAATCCCATCTACACCAGTTATCACCTTGCATTTTGTGCCCTCTCTACACCAAAAAAAAAAAAAAAATTAAAAAGTACAATGTACGGAGTAGATTTTTTTCATAAGACCTAGCTAGCAACATAATTGTAACTTGTAAGTAAATACATAATGATATACTTCAATCATCTAAGACATGCTTCTGGGTTCTAATGCTGCTCGTTCAATTTGTAGTGCACTGCTGATCTTCTTCTACTTGGTAGCCAATTTTGTGGTACCACAACTTATAACGAAAGGGTTTGGTGGCGAAGGGGATGAAAACGAGAAGCCTAACAACTCCGACTCTGTGGACGAGCTGAAAGTGAGCTCAACAGCAACGAAGCGTGGTTTTAACAACAACAAACTGAAATAAGAGGAAGCATTTTCGCATATCAGCTGATGTGTGCTTGCAAATACCTATCATAGCAAAAAAGCAAAATAGAAAAAAAAAATAAAAAAAAAATTGGATGGTACTTTTTTAAACAAAAATTGTACTTTTTTTTTCTTCTGTTGAATGGTACTTTGTTTTTTTTTTTTAATATGAATGGTACTTTCTTTTTCCCCTATTTTGTCTTTTAACTATTTGTCTTTTGCCACACATATCAAACATCCGAAAATACTTCTTCAAATAAGCATACTTTTACATGCTCTTATATATGAGCAATATTATCCAGTATGAAGTATTTATTAGGATGTGTGAATCTTTATACTTGTATGGCAGCAGCGGCAACAGTACAACTAGAGAAATTCAGAACATAAACAAGAAAACATCTTAGCTAATTCTTGAATATCAAAATATTTTCCATTTCTATAATGTTCTGTACGACTGTACCCGAACACAAAAAAATAATTACAATATTGTCCATGGAAATTTTGATGGACTAATAACTCTATCTAATTTACAATTGATTATAACGTAAAAACAAAAAAACAAAAAAAAAAGTTCTTCAAACAACTGTCCAATCATTTTCATCTAAACCAGATGAGTTGTTGGCTGGGGGTTGTGTGTTTTCAG

mRNA sequence

ATTATCTAAAACTCATACAAAAATTATCCACAAATATATCCAAAAAAAAACTGAGGTGGCTGGTCTTCCTCTATGAGCTGCATTCATAGTCATTCTCCATCCCTTCACTTGCTTAACCTGCAAAAGCATAAACAAAATGCTGAAAAATCAACCAATTTACAATATGGGTTTTTCTCCAGCTACTCAGCAAAGAGGCACTGTAACATTATATCCAAAGTTGCAGTTTTACCTTTGAATGTAGAAACTTTTCATACTTCTCTCACACTTGCTGTTGCTAAACCTGCTAATACTGAAGTTCTGTTCCAAACCAGTGCACTGCTGATCTTCTTCTACTTGGTAGCCAATTTTGTGGTACCACAACTTATAACGAAAGGGTTTGGTGGCGAAGGGGATGAAAACGAGAAGCCTAACAACTCCGACTCTGTGGACGAGCTGAAAGTGAGCTCAACAGCAACGAAGCGTGGTTTTAACAACAACAAACTGAAATAAGAGGAAGCATTTTCGCATATCAGCTGATGTGTGCTTGCAAATACCTATCATAGCAAAAAAGCAAAATAGAAAAAAAAAATAAAAAAAAAATTGGATGGTACTTTTTTAAACAAAAATTGTACTTTTTTTTTCTTCTGTTGAATGGTACTTTGTTTTTTTTTTTTAATATGAATGGTACTTTCTTTTTCCCCTATTTTGTCTTTTAACTATTTGTCTTTTGCCACACATATCAAACATCCGAAAATACTTCTTCAAATAAGCATACTTTTACATGCTCTTATATATGAGCAATATTATCCAGTATGAAGTATTTATTAGGATGTGTGAATCTTTATACTTGTATGGCAGCAGCGGCAACAGTACAACTAGAGAAATTCAGAACATAAACAAGAAAACATCTTAGCTAATTCTTGAATATCAAAATATTTTCCATTTCTATAATGTTCTGTACGACTGTACCCGAACACAAAAAAATAATTACAATATTGTCCATGGAAATTTTGATGGACTAATAACTCTATCTAATTTACAATTGATTATAACGTAAAAACAAAAAAACAAAAAAAAAAGTTCTTCAAACAACTGTCCAATCATTTTCATCTAAACCAGATGAGTTGTTGGCTGGGGGTTGTGTGTTTTCAG

Coding sequence (CDS)

ATGAGCTGCATTCATAGTCATTCTCCATCCCTTCACTTGCTTAACCTGCAAAAGCATAAACAAAATGCTGAAAAATCAACCAATTTACAATATGGGTTTTTCTCCAGCTACTCAGCAAAGAGGCACTGTAACATTATATCCAAAGTTGCAGTTTTACCTTTGAATGTAGAAACTTTTCATACTTCTCTCACACTTGCTGTTGCTAAACCTGCTAATACTGAAGTTCTGTTCCAAACCAGTGCACTGCTGATCTTCTTCTACTTGGTAGCCAATTTTGTGGTACCACAACTTATAACGAAAGGGTTTGGTGGCGAAGGGGATGAAAACGAGAAGCCTAACAACTCCGACTCTGTGGACGAGCTGAAAGTGAGCTCAACAGCAACGAAGCGTGGTTTTAACAACAACAAACTGAAATAA

Protein sequence

MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFHTSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGEGDENEKPNNSDSVDELKVSSTATKRGFNNNKLK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo09487Spo09487gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo09487.1Spo09487.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo09487.1.exon.1Spo09487.1.exon.1exon
Spo09487.1.exon.2Spo09487.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo09487.1.utr5p.1Spo09487.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo09487.1.CDS.1Spo09487.1.CDS.1CDS
Spo09487.1.CDS.2Spo09487.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo09487.1.utr3p.1Spo09487.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo09487.1 vs. NCBI nr
Match: gi|902210829|gb|KNA16546.1| (hypothetical protein SOVF_088300 [Spinacia oleracea])

HSP 1 Score: 268.5 bits (685), Expect = 6.600e-69
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 

		  

Query: 1   MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFH 60
           MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFH
Sbjct: 1   MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFH 60

Query: 61  TSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGEGDENEKPNNSDSVDE 120
           TSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGEGDENEKPNNSDSVDE
Sbjct: 61  TSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGEGDENEKPNNSDSVDE 120

Query: 121 LKVSSTATKRGFNNNKLK 139
           LKVSSTATKRGFNNNKLK
Sbjct: 121 LKVSSTATKRGFNNNKLK 138
[Close]
BLAST of Spo09487.1 vs. NCBI nr
Match: gi|731371959|ref|XP_010666203.1| (PREDICTED: uncharacterized protein LOC104883384 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 133.3 bits (334), Expect = 3.300e-28
Identity = 82/139 (58.99%), Postives = 96/139 (69.06%), Query Frame = 1 

		  

Query: 1   MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFH 60
           MSCIH +SPSLHLL LQKH+ NA   T L +  FS  S  +H    S++ VLPL VE F 
Sbjct: 1   MSCIHCYSPSLHLLTLQKHRHNARIPTKLSW-LFSGNSTNKHFK--SQIGVLPLKVEDFP 60

Query: 61  TSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGE-GDENEKPNNSDSVD 120
           T  TL VAKPANT VL QTSA++IFFYL+ANFVVP  I+K F  E  DENEKPN ++ VD
Sbjct: 61  T-FTLVVAKPANTTVLIQTSAVMIFFYLIANFVVPLFISKEFESEKEDENEKPNITNPVD 120

Query: 121 ELKVSSTATKRGFNNNKLK 139
           + K SS   KRGFN+ K K
Sbjct: 121 KGKSSSKTGKRGFNSTKPK 135
[Close]
BLAST of Spo09487.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAM4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088300 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 4.600e-69
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 1 

		  

Query: 1   MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFH 60
           MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFH
Sbjct: 1   MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFH 60

Query: 61  TSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGEGDENEKPNNSDSVDE 120
           TSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGEGDENEKPNNSDSVDE
Sbjct: 61  TSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGEGDENEKPNNSDSVDE 120

Query: 121 LKVSSTATKRGFNNNKLK 139
           LKVSSTATKRGFNNNKLK
Sbjct: 121 LKVSSTATKRGFNNNKLK 138
[Close]
BLAST of Spo09487.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B4W2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_000610 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.300e-28
Identity = 82/139 (58.99%), Postives = 96/139 (69.06%), Query Frame = 1 

		  

Query: 1   MSCIHSHSPSLHLLNLQKHKQNAEKSTNLQYGFFSSYSAKRHCNIISKVAVLPLNVETFH 60
           MSCIH +SPSLHLL LQKH+ NA   T L +  FS  S  +H    S++ VLPL VE F 
Sbjct: 1   MSCIHCYSPSLHLLTLQKHRHNARIPTKLSW-LFSGNSTNKHFK--SQIGVLPLKVEDFP 60

Query: 61  TSLTLAVAKPANTEVLFQTSALLIFFYLVANFVVPQLITKGFGGE-GDENEKPNNSDSVD 120
           T  TL VAKPANT VL QTSA++IFFYL+ANFVVP  I+K F  E  DENEKPN ++ VD
Sbjct: 61  T-FTLVVAKPANTTVLIQTSAVMIFFYLIANFVVPLFISKEFESEKEDENEKPNITNPVD 120

Query: 121 ELKVSSTATKRGFNNNKLK 139
           + K SS   KRGFN+ K K
Sbjct: 121 KGKSSSKTGKRGFNSTKPK 135
The following BLAST results are available for this feature:
BLAST of Spo09487.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902210829|gb|KNA16546.1|6.6e-69100.hypothetical protein SOVF_0883... [more]
gi|731371959|ref|XP_010666203.1|3.3e-2858.9PREDICTED: uncharacterized pro... [more]
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BLAST of Spo09487.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RAM4_SPIOL4.6e-69100.Uncharacterized protein OS=Spi... [more]
A0A0J8B4W2_BETVU2.3e-2858.9Uncharacterized protein OS=Bet... [more]
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BLAST of Spo09487.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo09487.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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