Spo09805.1 (mRNA) | SpinachBase

Overview


Name	Spo09805.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Apocytochrome f (Precursor)
Location	SpoScf_41248 : 31 .. 432 (+)
Sequence length	402

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTAACAGGGGAAGGGGTCAAATTTATCCTGACGGAAGCAAGAGTAATAATACAGTTTATAATTCCACAGCAACAGGTATAGTAAAGAAAATTGTACGAAAAGAAAAGGGCGGATACGAAATAAACATAGCGGATGCCTCGGATGGACGTGAAGTGGTTGATATTATCCCTCGAGGACCAAAGCTTCTTGTTTCCGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGGTTTGGTCAGGGAGACGCAGAAGTAGTACTTCTAGACCCACTGCGCATACAAGGTCTTTTGTTTTTCTTTGCGTCTGTTATTTTAGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTCGAGAAGGTTCAATTGTCCGAAACGAATTTC

mRNA sequence

GGTAACAGGGGAAGGGGTCAAATTTATCCTGACGGAAGCAAGAGTAATAATACAGTTTATAATTCCACAGCAACAGGTATAGTAAAGAAAATTGTACGAAAAGAAAAGGGCGGATACGAAATAAACATAGCGGATGCCTCGGATGGACGTGAAGTGGTTGATATTATCCCTCGAGGACCAAAGCTTCTTGTTTCCGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGGTTTGGTCAGGGAGACGCAGAAGTAGTACTTCTAGACCCACTGCGCATACAAGGTCTTTTGTTTTTCTTTGCGTCTGTTATTTTAGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTCGAGAAGGTTCAATTGTCCGAAACGAATTTC

Coding sequence (CDS)

GGTAACAGGGGAAGGGGTCAAATTTATCCTGACGGAAGCAAGAGTAATAATACAGTTTATAATTCCACAGCAACAGGTATAGTAAAGAAAATTGTACGAAAAGAAAAGGGCGGATACGAAATAAACATAGCGGATGCCTCGGATGGACGTGAAGTGGTTGATATTATCCCTCGAGGACCAAAGCTTCTTGTTTCCGAGGGTGAATCTATCAAACTTGATCAACCATTAACGAGTAATCCTAATGTGGGTGGGTTTGGTCAGGGAGACGCAGAAGTAGTACTTCTAGACCCACTGCGCATACAAGGTCTTTTGTTTTTCTTTGCGTCTGTTATTTTAGCACAAATCTTTTTGGTTCTTAAAAAGAAACAATTCGAGAAGGTTCAATTGTCCGAAACGAATTTC

Protein sequence

GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGPKLLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLLDPLRIQGLLFFFASVILAQIFLVLKKKQFEKVQLSETNF

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo09805	Spo09805	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo09805.1	Spo09805.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09805.1.exon.1	Spo09805.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09805.1.CDS.1	Spo09805.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo09805.1 vs. NCBI nr
Match: gi|11497541|ref|NP_054949.1| (cytochrome f [Spinacia oleracea])

HSP 1 Score: 255.4 bits (651), Expect = 5.600e-65
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 1

		  
Query: 1   GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 60
           GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP
Sbjct: 187 GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 246

Query: 61  KLLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLLDPLRIQGLLFFFASVILAQIFLVLK 120
           +LLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVL DPLRIQGLLFFFASVILAQIFLVLK
Sbjct: 247 ELLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLQDPLRIQGLLFFFASVILAQIFLVLK 306

Query: 121 KKQFEKVQLSETNF 135
           KKQFEKVQLSE NF
Sbjct: 307 KKQFEKVQLSEMNF 320

[Close]

BLAST of Spo09805.1 vs. NCBI nr
Match: gi|552888|gb|AAA84632.1| (apocytochrome f precursor [Spinacia oleracea])

HSP 1 Score: 252.3 bits (643), Expect = 4.800e-64
Identity = 130/134 (97.01%), Postives = 131/134 (97.76%), Query Frame = 1

		  
Query: 1   GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 60
           GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASD REVVDIIPRGP
Sbjct: 187 GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDRREVVDIIPRGP 246

Query: 61  KLLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLLDPLRIQGLLFFFASVILAQIFLVLK 120
           +LLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVL DPLRIQGLLFFFASVILAQIFLVLK
Sbjct: 247 ELLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLQDPLRIQGLLFFFASVILAQIFLVLK 306

Query: 121 KKQFEKVQLSETNF 135
           KKQFEKVQLSE NF
Sbjct: 307 KKQFEKVQLSEMNF 320

[Close]

BLAST of Spo09805.1 vs. NCBI nr
Match: gi|910354330|ref|YP_009160815.1| (cytochrome f (chloroplast) [Haloxylon ammodendron])

HSP 1 Score: 250.0 bits (637), Expect = 2.400e-63
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 1

		  
Query: 1   GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 60
           GNRGRGQIYPDGSKSNNTVYNSTA GIVKKIVRKEKGGYEINIADASDGREVVDIIP GP
Sbjct: 187 GNRGRGQIYPDGSKSNNTVYNSTAAGIVKKIVRKEKGGYEINIADASDGREVVDIIPPGP 246

Query: 61  KLLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLLDPLRIQGLLFFFASVILAQIFLVLK 120
           +LLVSEGESIKLDQPLTSNPNVGGFGQGDAE+VL DPLR+QGLLFFFASVILAQIFLVLK
Sbjct: 247 ELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFFASVILAQIFLVLK 306

Query: 121 KKQFEKVQLSETNF 135
           KKQFEKVQLSE NF
Sbjct: 307 KKQFEKVQLSEMNF 320

[Close]

BLAST of Spo09805.1 vs. NCBI nr
Match: gi|628819120|gb|AHY80553.1| (cytochrome f (plastid) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 246.9 bits (629), Expect = 2.000e-62
Identity = 125/134 (93.28%), Postives = 129/134 (96.27%), Query Frame = 1

		  
Query: 1   GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 60
           GNRGRGQIYPDGSKSNNTVYN+TA GIV KIVRKEKGGYEINIADASDGREVVDIIP GP
Sbjct: 187 GNRGRGQIYPDGSKSNNTVYNATAAGIVNKIVRKEKGGYEINIADASDGREVVDIIPPGP 246

Query: 61  KLLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLLDPLRIQGLLFFFASVILAQIFLVLK 120
           +LLVSEGESIKLDQPLTSNPNVGGFGQGDAE+VL DPLR+QGLLFFFASVILAQIFLVLK
Sbjct: 247 ELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFFASVILAQIFLVLK 306

Query: 121 KKQFEKVQLSETNF 135
           KKQFEKVQLSE NF
Sbjct: 307 KKQFEKVQLSEMNF 320

[Close]

BLAST of Spo09805.1 vs. NCBI nr
Match: gi|916439395|gb|AKZ22402.1| (cytochrome f (plastid) [Silene vulgaris])

HSP 1 Score: 245.4 bits (625), Expect = 5.800e-62
Identity = 124/134 (92.54%), Postives = 130/134 (97.01%), Query Frame = 1

		  
Query: 1   GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 60
           GNRGRGQIYPDGSKSNNTVYN+TATGIVKKI+RKEKGGYEI+IADA DGREVVDIIP GP
Sbjct: 187 GNRGRGQIYPDGSKSNNTVYNATATGIVKKILRKEKGGYEISIADALDGREVVDIIPPGP 246

Query: 61  KLLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLLDPLRIQGLLFFFASVILAQIFLVLK 120
           +LLVSEGESIKLDQPLTSNPNVGGFGQGDAE+VL DPLR+QGLLFFFASVILAQIFLVLK
Sbjct: 247 ELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFFASVILAQIFLVLK 306

Query: 121 KKQFEKVQLSETNF 135
           KKQFEKVQLSE NF
Sbjct: 307 KKQFEKVQLSEMNF 320

[Close]

BLAST of Spo09805.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K8E7_9CARY (Cytochrome f OS=Haloxylon persicum GN=petA PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.600e-63
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 1

		  
Query: 1   GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 60
           GNRGRGQIYPDGSKSNNTVYNSTA GIVKKIVRKEKGGYEINIADASDGREVVDIIP GP
Sbjct: 187 GNRGRGQIYPDGSKSNNTVYNSTAAGIVKKIVRKEKGGYEINIADASDGREVVDIIPPGP 246

Query: 61  KLLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLLDPLRIQGLLFFFASVILAQIFLVLK 120
           +LLVSEGESIKLDQPLTSNPNVGGFGQGDAE+VL DPLR+QGLLFFFASVILAQIFLVLK
Sbjct: 247 ELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFFASVILAQIFLVLK 306

Query: 121 KKQFEKVQLSETNF 135
           KKQFEKVQLSE NF
Sbjct: 307 KKQFEKVQLSEMNF 320

[Close]

BLAST of Spo09805.1 vs. UniProtKB/TrEMBL
Match: A0A0K0K867_9CARY (Cytochrome f OS=Haloxylon ammodendron GN=petA PE=3 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.600e-63
Identity = 127/134 (94.78%), Postives = 130/134 (97.01%), Query Frame = 1

		  
Query: 1   GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 60
           GNRGRGQIYPDGSKSNNTVYNSTA GIVKKIVRKEKGGYEINIADASDGREVVDIIP GP
Sbjct: 187 GNRGRGQIYPDGSKSNNTVYNSTAAGIVKKIVRKEKGGYEINIADASDGREVVDIIPPGP 246

Query: 61  KLLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLLDPLRIQGLLFFFASVILAQIFLVLK 120
           +LLVSEGESIKLDQPLTSNPNVGGFGQGDAE+VL DPLR+QGLLFFFASVILAQIFLVLK
Sbjct: 247 ELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFFASVILAQIFLVLK 306

Query: 121 KKQFEKVQLSETNF 135
           KKQFEKVQLSE NF
Sbjct: 307 KKQFEKVQLSEMNF 320

[Close]

BLAST of Spo09805.1 vs. UniProtKB/TrEMBL
Match: A0A023ZPT1_BETVU (Cytochrome f OS=Beta vulgaris subsp. vulgaris GN=petA PE=3 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 1.400e-62
Identity = 125/134 (93.28%), Postives = 129/134 (96.27%), Query Frame = 1

		  
Query: 1   GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 60
           GNRGRGQIYPDGSKSNNTVYN+TA GIV KIVRKEKGGYEINIADASDGREVVDIIP GP
Sbjct: 187 GNRGRGQIYPDGSKSNNTVYNATAAGIVNKIVRKEKGGYEINIADASDGREVVDIIPPGP 246

Query: 61  KLLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLLDPLRIQGLLFFFASVILAQIFLVLK 120
           +LLVSEGESIKLDQPLTSNPNVGGFGQGDAE+VL DPLR+QGLLFFFASVILAQIFLVLK
Sbjct: 247 ELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFFASVILAQIFLVLK 306

Query: 121 KKQFEKVQLSETNF 135
           KKQFEKVQLSE NF
Sbjct: 307 KKQFEKVQLSEMNF 320

[Close]

BLAST of Spo09805.1 vs. UniProtKB/TrEMBL
Match: B0LNQ0_SILLA (Cytochrome f OS=Silene latifolia GN=petA PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.100e-62
Identity = 124/134 (92.54%), Postives = 130/134 (97.01%), Query Frame = 1

		  
Query: 1   GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 60
           GNRGRGQIYPDGSKSNNTVYN+TATGIVKKI+RKEKGGYEI+IADA DGREVVDIIP GP
Sbjct: 187 GNRGRGQIYPDGSKSNNTVYNATATGIVKKILRKEKGGYEISIADALDGREVVDIIPPGP 246

Query: 61  KLLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLLDPLRIQGLLFFFASVILAQIFLVLK 120
           +LLVSEGESIKLDQPLTSNPNVGGFGQGDAE+VL DPLR+QGLLFFFASVILAQIFLVLK
Sbjct: 247 ELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFFASVILAQIFLVLK 306

Query: 121 KKQFEKVQLSETNF 135
           KKQFEKVQLSE NF
Sbjct: 307 KKQFEKVQLSEMNF 320

[Close]

BLAST of Spo09805.1 vs. UniProtKB/TrEMBL
Match: B0LNK8_9CARY (Cytochrome f OS=Silene integripetala GN=petA PE=3 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 4.100e-62
Identity = 124/134 (92.54%), Postives = 130/134 (97.01%), Query Frame = 1

		  
Query: 1   GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 60
           GNRGRGQIYPDGSKSNNTVYN+TATGIVKKI+RKEKGGYEI+IADA DGREVVDIIP GP
Sbjct: 187 GNRGRGQIYPDGSKSNNTVYNATATGIVKKILRKEKGGYEISIADALDGREVVDIIPPGP 246

Query: 61  KLLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLLDPLRIQGLLFFFASVILAQIFLVLK 120
           +LLVSEGESIKLDQPLTSNPNVGGFGQGDAE+VL DPLR+QGLLFFFASVILAQIFLVLK
Sbjct: 247 ELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFFASVILAQIFLVLK 306

Query: 121 KKQFEKVQLSETNF 135
           KKQFEKVQLSE NF
Sbjct: 307 KKQFEKVQLSEMNF 320

[Close]

BLAST of Spo09805.1 vs. ExPASy Swiss-Prot
Match: CYF_SPIOL (Cytochrome f OS=Spinacia oleracea GN=petA PE=3 SV=3)

HSP 1 Score: 255.4 bits (651), Expect = 3.500e-67
Identity = 131/134 (97.76%), Postives = 132/134 (98.51%), Query Frame = 1

		  
Query: 1   GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 60
           GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP
Sbjct: 187 GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 246

Query: 61  KLLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLLDPLRIQGLLFFFASVILAQIFLVLK 120
           +LLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVL DPLRIQGLLFFFASVILAQIFLVLK
Sbjct: 247 ELLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLQDPLRIQGLLFFFASVILAQIFLVLK 306

Query: 121 KKQFEKVQLSETNF 135
           KKQFEKVQLSE NF
Sbjct: 307 KKQFEKVQLSEMNF 320

[Close]

BLAST of Spo09805.1 vs. ExPASy Swiss-Prot
Match: CYF_HELAN (Cytochrome f OS=Helianthus annuus GN=petA PE=3 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 5.300e-63
Identity = 121/134 (90.30%), Postives = 129/134 (96.27%), Query Frame = 1

		  
Query: 1   GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 60
           GNRGRGQIYPDGSKSNNTVYN+TA+GIV KI+RKEKGGYEI IADASDGR+VVDIIP GP
Sbjct: 187 GNRGRGQIYPDGSKSNNTVYNATASGIVSKILRKEKGGYEITIADASDGRQVVDIIPPGP 246

Query: 61  KLLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLLDPLRIQGLLFFFASVILAQIFLVLK 120
           +LLVSEGESIKLDQPLTSNPNVGGFGQGDAE+VL DPLR+QGLLFFFA+VILAQIFLVLK
Sbjct: 247 ELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFFAAVILAQIFLVLK 306

Query: 121 KKQFEKVQLSETNF 135
           KKQFEKVQLSE NF
Sbjct: 307 KKQFEKVQLSEMNF 320

[Close]

BLAST of Spo09805.1 vs. ExPASy Swiss-Prot
Match: CYF_SORBI (Cytochrome f OS=Sorghum bicolor GN=petA PE=3 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 9.000e-63
Identity = 119/134 (88.81%), Postives = 129/134 (96.27%), Query Frame = 1

		  
Query: 1   GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 60
           GNRGRGQIYPDGSKSNNTVYN+T+TGIVKKI+RKEKGGYEI+I DASDGR+V+DIIP GP
Sbjct: 187 GNRGRGQIYPDGSKSNNTVYNATSTGIVKKILRKEKGGYEISIVDASDGRQVIDIIPPGP 246

Query: 61  KLLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLLDPLRIQGLLFFFASVILAQIFLVLK 120
           +LLVSEGESIKLDQPLTSNPNVGGFGQGDAE+VL DPLR+QGLLFFFASVILAQ+FLVLK
Sbjct: 247 ELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFFASVILAQVFLVLK 306

Query: 121 KKQFEKVQLSETNF 135
           KKQFEKVQL E NF
Sbjct: 307 KKQFEKVQLYEMNF 320

[Close]

BLAST of Spo09805.1 vs. ExPASy Swiss-Prot
Match: CYF_CALFG (Cytochrome f OS=Calycanthus floridus var. glaucus GN=petA PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.200e-62
Identity = 121/134 (90.30%), Postives = 128/134 (95.52%), Query Frame = 1

		  
Query: 1   GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 60
           GNRGRGQIYPDGSKSNNTVYN+TA GIV +IVRKEKGGYEI+IADASDGR+VVDIIP GP
Sbjct: 187 GNRGRGQIYPDGSKSNNTVYNATAAGIVSRIVRKEKGGYEISIADASDGRQVVDIIPPGP 246

Query: 61  KLLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLLDPLRIQGLLFFFASVILAQIFLVLK 120
           +LLVSEGESIKLDQPLTSNPNVGGFGQGDAE+VL DPLR+QGLLFF ASVILAQIFLVLK
Sbjct: 247 ELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLASVILAQIFLVLK 306

Query: 121 KKQFEKVQLSETNF 135
           KKQFEKVQLSE NF
Sbjct: 307 KKQFEKVQLSEMNF 320

[Close]

BLAST of Spo09805.1 vs. ExPASy Swiss-Prot
Match: CYF_OENPA (Cytochrome f OS=Oenothera parviflora GN=petA PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 1.500e-62
Identity = 121/134 (90.30%), Postives = 126/134 (94.03%), Query Frame = 1

		  
Query: 1   GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 60
           GNRGRGQIYPDGSKSNNTVYN+TA GIV KI+RKEKGGYEI I DASDGR+VVDIIP GP
Sbjct: 185 GNRGRGQIYPDGSKSNNTVYNATAAGIVSKIIRKEKGGYEITITDASDGRQVVDIIPSGP 244

Query: 61  KLLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLLDPLRIQGLLFFFASVILAQIFLVLK 120
           +LLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVL DPLR+QGLLFF ASVILAQIFLVLK
Sbjct: 245 ELLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLQDPLRVQGLLFFLASVILAQIFLVLK 304

Query: 121 KKQFEKVQLSETNF 135
           KKQFEKVQLSE NF
Sbjct: 305 KKQFEKVQLSEMNF 318

[Close]

BLAST of Spo09805.1 vs. TAIR (Arabidopsis)
Match: ATCG00540.1 (photosynthetic electron transfer A)

HSP 1 Score: 233.0 bits (593), Expect = 1.100e-61
Identity = 116/134 (86.57%), Postives = 125/134 (93.28%), Query Frame = 1

		  
Query: 1   GNRGRGQIYPDGSKSNNTVYNSTATGIVKKIVRKEKGGYEINIADASDGREVVDIIPRGP 60
           GNRGRGQIYPDGSKSNNTVYN+TA GI+ KI+RKEKGGYEI I DAS+GREV+DIIPRG 
Sbjct: 187 GNRGRGQIYPDGSKSNNTVYNATAGGIISKILRKEKGGYEITIVDASNGREVIDIIPRGL 246

Query: 61  KLLVSEGESIKLDQPLTSNPNVGGFGQGDAEVVLLDPLRIQGLLFFFASVILAQIFLVLK 120
           +LLVSEGESIKLDQPLTSNPNVGGFGQGDAE+VL DPLR+QGLLFF  SV+LAQIFLVLK
Sbjct: 247 ELLVSEGESIKLDQPLTSNPNVGGFGQGDAEIVLQDPLRVQGLLFFLGSVVLAQIFLVLK 306

Query: 121 KKQFEKVQLSETNF 135
           KKQFEKVQLSE NF
Sbjct: 307 KKQFEKVQLSEMNF 320

The following BLAST results are available for this feature:

BLAST of Spo09805.1 vs. NCBI nr
BLAST of Spo09805.1 vs. UniProtKB/TrEMBL
BLAST of Spo09805.1 vs. ExPASy Swiss-Prot
BLAST of Spo09805.1 vs. TAIR (Arabidopsis)

BLAST of Spo09805.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|11497541\|ref\|NP_054949.1\|	5.6e-65	97.7	cytochrome f [Spinacia olerace...	[more]
gi\|552888\|gb\|AAA84632.1\|	4.8e-64	97.0	apocytochrome f precursor [Spi...	[more]
gi\|910354330\|ref\|YP_009160815.1\|	2.4e-63	94.7	cytochrome f (chloroplast) [Ha...	[more]
gi\|628819120\|gb\|AHY80553.1\|	2.0e-62	93.2	cytochrome f (plastid) [Beta v...	[more]
gi\|916439395\|gb\|AKZ22402.1\|	5.8e-62	92.5	cytochrome f (plastid) [Silene...	[more]

BLAST of Spo09805.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K0K8E7_9CARY	1.6e-63	94.7	Cytochrome f OS=Haloxylon pers...	[more]
A0A0K0K867_9CARY	1.6e-63	94.7	Cytochrome f OS=Haloxylon ammo...	[more]
A0A023ZPT1_BETVU	1.4e-62	93.2	Cytochrome f OS=Beta vulgaris ...	[more]
B0LNQ0_SILLA	4.1e-62	92.5	Cytochrome f OS=Silene latifol...	[more]
B0LNK8_9CARY	4.1e-62	92.5	Cytochrome f OS=Silene integri...	[more]

BLAST of Spo09805.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
CYF_SPIOL	3.5e-67	97.7	Cytochrome f OS=Spinacia olera...	[more]
CYF_HELAN	5.3e-63	90.3	Cytochrome f OS=Helianthus ann...	[more]
CYF_SORBI	9.0e-63	88.8	Cytochrome f OS=Sorghum bicolo...	[more]
CYF_CALFG	1.2e-62	90.3	Cytochrome f OS=Calycanthus fl...	[more]
CYF_OENPA	1.5e-62	90.3	Cytochrome f OS=Oenothera parv...	[more]

BLAST of Spo09805.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
ATCG00540.1	1.1e-61	86.5	photosynthetic electron transf...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002325	Cytochrome f	PRINTS	PR00610	CYTOCHROMEF	coord: 3..26 score: 8.9E-64coord: 115..132 score: 8.9E-64coord: 94..114 score: 8.9E-64coord: 52..72 score: 8.9E-64coord: 73..93 score: 8.9
IPR002325	Cytochrome f	PFAM	PF01333	Apocytochr_F_C	coord: 16..134 score: 5.8
IPR002325	Cytochrome f	PROFILE	PS51010	CYTF	coord: 1..134 score: 4
IPR011054	Rudiment single hybrid motif	unknown	SSF51246	Rudiment single hybrid motif	coord: 17..79 score: 2.54
IPR024058	Cytochrome f transmembrane anchor	GENE3D	1.20.5.700		coord: 100..134 score: 5.3
IPR024058	Cytochrome f transmembrane anchor	unknown	SSF103431	Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor	coord: 96..134 score: 3.79
IPR024094	Cytochrome f large domain	GENE3D	2.60.40.830		coord: 1..16 score: 4.4E-17coord: 78..99 score: 4.4
IPR024094	Cytochrome f large domain	unknown	SSF49441	Cytochrome f, large domain	coord: 79..99 score: 4.84E-13coord: 1..16 score: 4.84
None	No IPR available	GENE3D	2.40.50.100		coord: 20..77 score: 1.3
None	No IPR available	PANTHER	PTHR33288	FAMILY NOT NAMED	coord: 1..134 score: 1.1
None	No IPR available	PANTHER	PTHR33288:SF3	APOCYTOCHROME F	coord: 1..134 score: 1.1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0031361	integral component of thylakoid membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding
molecular_function	GO:0005506	iron ion binding