Spo09866.1 (mRNA)

Overview
NameSpo09866.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_201 : 644321 .. 645210 (-)
Sequence length465
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAATCGAGTGGTAGTTCTTCTATAATATTTTACTTGCTAGGCTTCCCTATGATTTTGGACCTGCAAGTTAGCTAATGCAAAACAACCCTTTGAACAATCAGGTTATGGGAATTTTATGTTAATGTTAGATTCATCAGTATTTTTCATATTGTATTCCCCTAACACCATTAGCGCATATGAGTTTGTAGATCTTTACCTGCTTGCGAGCAGCTTTGTAATGCCAGGTACAAAAATATCTTTTGGGTTCAAGGAGGACTGGAAGCAGCAGAAGAAGAGGTATTTACTTTAATTTGTATAGTCAAAATGTTTTGTTTTCTTGTGTGTTTTCTTTGAATGAAGGGAACTCAAGGTCTAATGCTGTGATGTACTCATACAGGATCTGCAGAGGGAAGGTTCACAACCATTTAAATTTGCCAGAATTTTCTTGGGTTAGTAGTCTGTTCAATATAACTTTTATTACTGATTTTGTGAATATGGCTATGTCATCTCAAGTTCTAGAAAATTCCGTCTCTCACTCACGTCGTATTATATTGATCCAAATTTTCTGTTTGAACTACCTTATTAAGTGCTTCATTATTTTTGTACATTCTTACAAGTAACCCTGCAGTTGCCTTGACTTTTAAAAGAATAATAGTGGTATTTCTGGGATTGATATAGAGTGAACTAAAACTCTACAACTTTATTTACAAAATTTATACAGTATATACTTCGTATTTAAACTTGACTAGGAAGTACATTTCAGTATGAAAAATGCGGACCAGGCCTCAATGTTTATGGGTGGATATGAAAAGTTTAAACCCTCAACTTGTTGGGATTATGTTTACCTTAAACTACACAAGATTACCTGTACTTTTTCTTCTTTAATTTTAAAATTATGTCCTTGA

mRNA sequence

ATGACTGAATCGAGTGGTAGTTCTTCTATAATATTTTACTTGCTAGGCTTCCCTATGATTTTGGACCTGCAATTTGTAGATCTTTACCTGCTTGCGAGCAGCTTTGTAATGCCAGGTACAAAAATATCTTTTGGGTTCAAGGAGGACTGGAAGCAGCAGAAGAAGAGGATCTGCAGAGGGAAGGTTCACAACCATTTAAATTTGCCAGAATTTTCTTGGGTTAGTAGTCTGTTCAATATAACTTTTATTACTGATTTTGTGAATATGGCTATGTCATCTCAAGTTCTAGAAAATTCCGTCTCTCACTCACGTCTACATTTCAGTATGAAAAATGCGGACCAGGCCTCAATGTTTATGGGTGGATATGAAAAGTTTAAACCCTCAACTTGTTGGGATTATGTTTACCTTAAACTACACAAGATTACCTGTACTTTTTCTTCTTTAATTTTAAAATTATGTCCTTGA

Coding sequence (CDS)

ATGACTGAATCGAGTGGTAGTTCTTCTATAATATTTTACTTGCTAGGCTTCCCTATGATTTTGGACCTGCAATTTGTAGATCTTTACCTGCTTGCGAGCAGCTTTGTAATGCCAGGTACAAAAATATCTTTTGGGTTCAAGGAGGACTGGAAGCAGCAGAAGAAGAGGATCTGCAGAGGGAAGGTTCACAACCATTTAAATTTGCCAGAATTTTCTTGGGTTAGTAGTCTGTTCAATATAACTTTTATTACTGATTTTGTGAATATGGCTATGTCATCTCAAGTTCTAGAAAATTCCGTCTCTCACTCACGTCTACATTTCAGTATGAAAAATGCGGACCAGGCCTCAATGTTTATGGGTGGATATGAAAAGTTTAAACCCTCAACTTGTTGGGATTATGTTTACCTTAAACTACACAAGATTACCTGTACTTTTTCTTCTTTAATTTTAAAATTATGTCCTTGA

Protein sequence

MTESSGSSSIIFYLLGFPMILDLQFVDLYLLASSFVMPGTKISFGFKEDWKQQKKRICRGKVHNHLNLPEFSWVSSLFNITFITDFVNMAMSSQVLENSVSHSRLHFSMKNADQASMFMGGYEKFKPSTCWDYVYLKLHKITCTFSSLILKLCP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo09866Spo09866gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo09866.1Spo09866.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo09866.1.CDS.4Spo09866.1.CDS.4CDS
Spo09866.1.CDS.3Spo09866.1.CDS.3CDS
Spo09866.1.CDS.2Spo09866.1.CDS.2CDS
Spo09866.1.CDS.1Spo09866.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo09866.1.exon.4Spo09866.1.exon.4exon
Spo09866.1.exon.3Spo09866.1.exon.3exon
Spo09866.1.exon.2Spo09866.1.exon.2exon
Spo09866.1.exon.1Spo09866.1.exon.1exon


Homology
[Close]
BLAST of Spo09866.1 vs. NCBI nr
Match: gi|902226226|gb|KNA20303.1| (hypothetical protein SOVF_053620 isoform B [Spinacia oleracea])

HSP 1 Score: 89.0 bits (219), Expect = 8.000e-15
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 1 

		  

Query: 37 MPGTKISFGFKEDWKQQKKRICRGKVHNHLNLPEFSWVSSL 78
          MPGTKISFGFKEDWKQQKKRICRGKVHNHLNLPEFSW   L
Sbjct: 1  MPGTKISFGFKEDWKQQKKRICRGKVHNHLNLPEFSWEEKL 41
[Close]
BLAST of Spo09866.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RLB6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_053620 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.600e-15
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 1 

		  

Query: 37 MPGTKISFGFKEDWKQQKKRICRGKVHNHLNLPEFSWVSSL 78
          MPGTKISFGFKEDWKQQKKRICRGKVHNHLNLPEFSW   L
Sbjct: 1  MPGTKISFGFKEDWKQQKKRICRGKVHNHLNLPEFSWEEKL 41
The following BLAST results are available for this feature:
BLAST of Spo09866.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902226226|gb|KNA20303.1|8.0e-1592.6hypothetical protein SOVF_0536... [more]
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BLAST of Spo09866.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RLB6_SPIOL5.6e-1592.6Uncharacterized protein OS=Spi... [more]
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BLAST of Spo09866.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo09866.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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