Spo09971.1 (mRNA)

Overview
NameSpo09971.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUbiquitin-like protein ATG12
Locationchr1 : 45017257 .. 45022947 (+)
Sequence length1608
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGTTCAAAGAGTCGGACTTTCTTCGAGAATTTCCGGCAAATTCACTGCTCCACCTTTCGACGTATTCTTGATTGAAGCTTTCCCCATGGCTTCCGAATCCCCCAGCGCTGTTCGAAAAGGTTCAAATCCTCAATTACCACTGCTAAATCCAAACTTTACTGTTGATTATATTTCCCCTTAATATTTGATCTCTCTTTAATTTCTCTCTTTTTTCGTGCTATTTTTTGGTGTATTGCAGTCGTGATTCACTTGAGGGCAACTGGTGATGCTCCCATACTCAAGCAACAAAAATTCAAGGTCTTGTTTGTTTTTCTTTTCGGGTTTATTGTTGTTGTTAAATTCCAATTTTATTGTTTCTCGTTGAATTGTTTTTTCCTTTATTGGAAGACCTAGAAATGTACTGCTAATTGAAGAAGAGGGACACCAATTTCTTTATTCTTGGAATAATTTTATTGGGAAGATAGCGAATCAAGAAAAAAACATATATTGAATGACAAATTTTTGGTATTAGACTGATCAAGAATTCACGGAGAGTGGTATACACTGGCATTCTTATACATCATCCCGAACTAGGGGCGGCATCGGTGCATCGCAAGCGTTTTACTTTTATGGTTCTTTGAAATTAGGGTTACTGACTCCGTTGTGATCAAGGTGAAGCGATCATCTTGGAAATTGAGCTGTTTGGAGGGGCTTGACAAGAATACAACTGTGATACTATATGAGAGAAAAGGCATAGTAAAATAAGTTATAGGTATATTGGCTTATATTAGGAATTAGTTCTGTGAACCGTGGTTTCAGAGCTATTTGATCATGAAATTATGGATGTTTGCTTAGAGGAACTTATGGGATGACTGACACTGTAAAAAGGAGAAGTGCAATGTAGTATGTTTAGTCGAAGAACAAGGCATATTATTTTGTTTATATGTTGTTTATGATACAATTATCCTGACGTCACTTTGTTATTCATTTCTCTCGAGAATTAACAAATGGTGAATTGCTTTTTTCATTTGATTTCGTGGTCATATTTGCTTTTAGGTTATCAGTGTAGTGGAGTGGTTGAGCTGAGGTAGACAGCTAGATTATTTTTCTACTTTGATGCCGCATATTTCTGCCTGTAACAATGTGCTAGTGTGCTACTGTGTAGTCCTGGGCATAACGACACAATAAAGTTTGATGAGAAGAGAGAACACGAGGAATTACCACACAAACAATATTGACTGAGTGCACTTTAGGAACTGTTGAGGATCTTTTCAATTTATTGTCAGTAGCACTTGCATCAAAGACAATCATTGAGAAAAATGGCATTGCTAATTTACTAGGGGTACTTAAGTTGGATCAATTAGACTGAAGGATGAAAGAGGCCATTTACTTATGCTGTCATTGAGTATCATTCATTTATCAAATATGGCACTCTGTTAAGGTTGTGGTCATTGGAAAAGGTGTTGAAGTTGTGCTATGAACTAACATAGCTGGGACAGATTTAAGAGATAGATTGAGAAAAGAAAAGGGAAGAAGATGAAGTTTGATTGATTATAAAATCAGGAAAGCAGCAATAATATATGGAAGTTACAAGCATTTGAGAGACTTGTTCTCTCCCAAAATGCAAAACAAACTAACAATAAGCTCTCAATAATATTCAGCATGATTCCCCTCTCCCTAATATTCTCTATATATAAACAAACCCAAGCATGATCTATTGAGGTTGTTGTGATCATTGGAAAAAGGTGTTGAAGTTTCTATAGGGGTCAGTGTTTTATGACTGCGGTAATACCTTTTGTAGTTTGTGTAGAGTATTGATAGCACATCTTATGTATTGGGCTGTCATATTGGGACCTTTGCTGCTACCATCGCTTTTAAGTTAGTCAATGCTAGTAACACCATCGTATTGATTAGATTGGGCAAGGCACTGCACATAACATTTTTTAGTCCGGGAAGGGCGCTGGGAGCCTGGGACTACCTCAAACCCTTTATTTTATAAAAAAAATTATACTTCGTAATTGGTCTAGAAGATGGTTAAGATATTAGTCATCAGTTTCAGGTGATGACTGAATTGTAAGTGCTTTTGTTTTTAGTTTATTTTTAATTATGCTGCAGAATGAACACTGACCAGTTTACATAGGCTCTCTACCTATTTGAATGCAAACTGTGGAAAACTGACAGGCAAAACTTATTGTGCAGATTTACATTCTCTGTAACCGAACATGAAAGGTTTAAAGATTTTAAATTTCCATGCTTTCATTCACGGTGTTATTATTTTACACTACAGAAACTGAGGATGCGTTTTAGCATTTACCATATATATTTATATATTGTGACATACGGAGTATGAAGGCTATGATAGCAGCTTTTAACGACTTCTCTTTCTCTATTTGACTTTTATGCTTTAACTTAGTACTAGTATTATTTTTTATTTAATCGTGGGTTAATGGCTTTTTTCTTTTTTATCTTCTCAGCATAGATTTTTACAGCCTGTCCCATACTGCTTATTAAAATTTCTTGTTTTTTCTTCACATAAGATGCCATCTGCATATGAGGTTTCCGTAAGACTTGTATAGTTATATGAATTTTTTATTATCCACGTTCAAAGCGCTAATGAGAAAGTATTGTCATGTCAGCAGAAAATTAAGGATGGGTTTGTTCTTGGCACCTTTATTTCTAAGAAATCATCTGTTATACTTGTATGTATTCTTTTGTGTGTGGTTTATCTGTTTTTTTAATTGATGAATGAGCAACAGTTTGCCTGATTTGTTGACTCTTCTCGTTATAGTTCTCTGTTATGCTTTCATTATCCTGAATACTGTTTATGTGTACGTCTTTCAGGTCTCTGGCACTGACAGGTTTGCTAGTGTTATTGATTTTCTACGTCGCCAACTTCATAAAGAAACCTTGGTAGGTGGCTTTTTATGTTGTTTGTTTTCCTCTTCCTAAGATAGATCGTTATATTTTTAGTTATGTGTATTTTTGCGCAGTTTGTGTACATCAACAGTGCCTTTTCTCCTAATCCAGATGAGTCGGTGATAGATCTCTACAATGTAAGTATTCTTTTTTCTTGATGGAAGCAAATGAGTTTGAGATCTTGGTAGGACTAGATATTGTTGGGATACTATTGCTATAAGTCCTCTTACACACAGAAGATCTAACAAATTTGATTTGCAATATATGTCACTAGTACTGTCATGTGTCCCCCTCCATGTTTGGGTTTGTTTTCAATTTTAGATGGTTCTTAATAGTATCAAAGGCGGAGTATTGTTTTAACAAACTACTTTATATGAAATTATGTGAACTTAGGTCCATCTAGGATTCTAGATAGCTACATGTTGTGTTCAAGATCAACAACCTTCACTAGCGTTTATATTCTTTAGAATTCCCAAAATATAGCCATATTGATGATTTTGATGAATTCTACTGTGTCAATAAGATTTGTATTGAAGAGTGTTAGTTTGATCTCATAACCTAGTATGTCAGAATTTGGTCGTCCACTTATATCCGGATTTGTAGAATCGGTTCCCTTGAAAGATGGGCCATGGCAGTAACTAGTGGGGTTAACTTCACTAGTCAATTGGTGCATGGAAAAGAACTTGATTTACCTCCAAATTGGTAGGCCTTACCATTGAATTCCTTCGCTGTGTCCTTACCTTCAGTTGTGGATAGCAGCCTATCAGGTGGCTTGAGAACCAGTAACCTGAATTATGAGGCTTAACTTAGTGCTCTTGCAGACCTTGTGTAGAGTGGATCTAGGTTAAAGCAAACAACTTTGGAGTTTTTGTTGCATGATTTTTTTATGCTTATAATTTTTTAGGAATCTAAGAGCCGTTTATAGCTAGTTGATTCCACCTCTTGCTTGATTGCATAGAGGGTTCATTTCAAATGTGAAGCTCCTTCGCAGTGTAGAGACCTCTAAAATAAGCTCCTAGAGTAGTTCTACTTCTTCCACGTACTTGTAAAACCTTTTGCACCAGTGTGAGAATCAGGTGTTCTTAGTTTTACATTGCAGCTTGTGTAAAAGAATTGCTTGCTGATTTTAGAAATAGTTTAGAAGTTTCGGGACACTGTAAAAGTTCTAGCTGAATAAGGTTAGGCATTGTCACAATTCAATGGGGTTAGATCTGCCAAATATAATGCTTAGTTTGATGACTGAAACACGGTGTTTCTTCTGTATATAACGGTGTCTTTCTCGTTCCAGACTAGCTGCAACTGCCTGAACCCGACTCACTCCCCACCAAAAAAAGAATAAAAGAAAAGAAAATAATACAGAGCCTTTTGCTGTGCTGAAACGACTTTCAATAAGCTAACTGTTGATTTCTTGTTGTAGAACTTTGGAATTGATGGTAAGCTGGTTGTCAATTATGCTTGTTCCATGGCTTGGGGCTGACTGTTGAATTGTTGATACAGCTATTTCATTTTACCGGTAAGCTTTTGAATGTTATGTAAATTCCTATGAAGAACCATGTTTGATAACAAGTTTGAAGCATACTTCCTGTATTTACAGTGATTTGTTGAATTGATCAGAAATGTACATTCGACGTGCTATATGTTCGATCTCTGAGGCCATGTATAGGGACACTGCTTCAGTTGTTGGTTGGTTGATAGATTGCGGAGTATGCTGTATGCTGACTCTCTCTCCCCTCTAAATGTGTCATTACAATAGCAAAATTTACATGATTTTAGTATTTATTTCACTTGTAAAGTTGACATGATTTCTGTTAATGTTTGTGGAAAGCAGAAGAATTTTCTTCCGGTTATGCATCCTGCTCGTCTTCCCTTTTTTTCTTGAGTCTGGTTGTTTTTCAGTTGAAAATAGTAGATCATTTCATAATTAATCCCGACTTTTCAGGCCCGTCTAAGGCCCATTTGGGCCCAATTCAGGCTGGGCTATTTTTATTTTTATATAATCAACATTTGGGTACTTGGGTTTGTTTCGTTGTACTTTGCAGTTTTGCTTCTCCTTTTTCACTAAACATTTGTTTCAATCAATATTTTATCATGATGGTTTGTCAAGCACATAATTTATCGTGTTTATGAGAATTGAAATATGCATTTTGGAGGCTTGATAAAACTTGAAATTTTGGTTCATTTTTTCTGAATCCGGATCCTCGGTCCCAAATCCGTGTCCCATCTAGTGTCCCAACTAATTCCATCGTGCACGCCCTTTAGTCATCCACCACCTTAAGAAATGTCATTTATAGCGTGATCAGTATTATTTTATTTGGGAAAATGAGGTTTATTTACCTATTGAGAATCTGAGAATGATTTTTTCATAAATCTCAAGCAAAAAGTTTGTTTTCAATAAGTAATCACCTACTGTTCATTGAAATTCCCTCACCTTAACCAACAAGTCACCAATTTTATCATAGTAAATGGAATTAATATAATTTTGTTGAGTTGGGACACTGAATAGGACATGGATTTGGGACAGAGGATCCACTAGCTTCAGCACATTTTCACTTCATTTTCCGGGTTATAGAAAACCCTTGCTTCATACGTACTTTGTATAATTCCTTTCAAGTAATCAGATGGTCTATTGTATTCGAGTTTAAATTTCGTCTACATTATTTTTCCTTTAAAATAATTTGATTTATATCCCATGCCGAATTAAGGTCGAGTTTTTGGTCCTATAATGTGAGCCAGTCCAATGACTATAGGATGCACCTGCACCTCCCAACCCCATGTCTGGTTAGCTGATCCCTGA

mRNA sequence

AATGTTCAAAGAGTCGGACTTTCTTCGAGAATTTCCGGCAAATTCACTGCTCCACCTTTCGACGTATTCTTGATTGAAGCTTTCCCCATGGCTTCCGAATCCCCCAGCGCTGTTCGAAAAGTCGTGATTCACTTGAGGGCAACTGGTGATGCTCCCATACTCAAGCAACAAAAATTCAAGGTCTCTGGCACTGACAGGTTTGCTAGTGTTATTGATTTTCTACGTCGCCAACTTCATAAAGAAACCTTGTTTGTGTACATCAACAGTGCCTTTTCTCCTAATCCAGATGAGTCGGTGATAGATCTCTACAATAACTTTGGAATTGATGGTAAGCTGGTTGTCAATTATGCTTGTTCCATGGCTTGGGGCTGACTGTTGAATTGTTGATACAGCTATTTCATTTTACCGTGATTTGTTGAATTGATCAGAAATGTACATTCGACGTGCTATATGTTCGATCTCTGAGGCCATGTATAGGGACACTGCTTCAGTTGTTGGTTGGTTGATAGATTGCGGAGTATGCTGTATGCTGACTCTCTCTCCCCTCTAAATGTGTCATTACAATAGCAAAATTTACATGATTTTAGTATTTATTTCACTTGTAAAGTTGACATGATTTCTGTTAATGTTTGTGGAAAGCAGAAGAATTTTCTTCCGGTTATGCATCCTGCTCGTCTTCCCTTTTTTTCTTGAGTCTGGTTGTTTTTCAGTTGAAAATAGTAGATCATTTCATAATTAATCCCGACTTTTCAGGCCCGTCTAAGGCCCATTTGGGCCCAATTCAGGCTGGGCTATTTTTATTTTTATATAATCAACATTTGGGTACTTGGGTTTGTTTCGTTGTACTTTGCAGTTTTGCTTCTCCTTTTTCACTAAACATTTGTTTCAATCAATATTTTATCATGATGGTTTGTCAAGCACATAATTTATCGTGTTTATGAGAATTGAAATATGCATTTTGGAGGCTTGATAAAACTTGAAATTTTGGTTCATTTTTTCTGAATCCGGATCCTCGGTCCCAAATCCGTGTCCCATCTAGTGTCCCAACTAATTCCATCGTGCACGCCCTTTAGTCATCCACCACCTTAAGAAATGTCATTTATAGCGTGATCAGTATTATTTTATTTGGGAAAATGAGGTTTATTTACCTATTGAGAATCTGAGAATGATTTTTTCATAAATCTCAAGCAAAAAGTTTGTTTTCAATAAGTAATCACCTACTGTTCATTGAAATTCCCTCACCTTAACCAACAAGTCACCAATTTTATCATAGTAAATGGAATTAATATAATTTTGTTGAGTTGGGACACTGAATAGGACATGGATTTGGGACAGAGGATCCACTAGCTTCAGCACATTTTCACTTCATTTTCCGGGTTATAGAAAACCCTTGCTTCATACGTACTTTGTATAATTCCTTTCAAGTAATCAGATGGTCTATTGTATTCGAGTTTAAATTTCGTCTACATTATTTTTCCTTTAAAATAATTTGATTTATATCCCATGCCGAATTAAGGTCGAGTTTTTGGTCCTATAATGTGAGCCAGTCCAATGACTATAGGATGCACCTGCACCTCCCAACCCCATGTCTGGTTAGCTGATCCCTGA

Coding sequence (CDS)

ATGGCTTCCGAATCCCCCAGCGCTGTTCGAAAAGTCGTGATTCACTTGAGGGCAACTGGTGATGCTCCCATACTCAAGCAACAAAAATTCAAGGTCTCTGGCACTGACAGGTTTGCTAGTGTTATTGATTTTCTACGTCGCCAACTTCATAAAGAAACCTTGTTTGTGTACATCAACAGTGCCTTTTCTCCTAATCCAGATGAGTCGGTGATAGATCTCTACAATAACTTTGGAATTGATGGTAAGCTGGTTGTCAATTATGCTTGTTCCATGGCTTGGGGCTGA

Protein sequence

MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINSAFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo09971Spo09971gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo09971.1Spo09971.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo09971.1.exon.1Spo09971.1.exon.1exon
Spo09971.1.exon.2Spo09971.1.exon.2exon
Spo09971.1.exon.3Spo09971.1.exon.3exon
Spo09971.1.exon.4Spo09971.1.exon.4exon
Spo09971.1.exon.5Spo09971.1.exon.5exon
Spo09971.1.exon.6Spo09971.1.exon.6exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo09971.1.utr5p.1Spo09971.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo09971.1.CDS.1Spo09971.1.CDS.1CDS
Spo09971.1.CDS.2Spo09971.1.CDS.2CDS
Spo09971.1.CDS.3Spo09971.1.CDS.3CDS
Spo09971.1.CDS.4Spo09971.1.CDS.4CDS
Spo09971.1.CDS.5Spo09971.1.CDS.5CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo09971.1.utr3p.1Spo09971.1.utr3p.1three_prime_UTR
Spo09971.1.utr3p.2Spo09971.1.utr3p.2three_prime_UTR


Homology
[Close]
BLAST of Spo09971.1 vs. NCBI nr
Match: gi|902221237|gb|KNA18840.1| (hypothetical protein SOVF_067150 [Spinacia oleracea])

HSP 1 Score: 191.8 bits (486), Expect = 5.400e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

		  

Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS
Sbjct: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 94
[Close]
BLAST of Spo09971.1 vs. NCBI nr
Match: gi|731348093|ref|XP_010685319.1| (PREDICTED: ubiquitin-like protein ATG12 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 190.7 bits (483), Expect = 1.200e-45
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 1 

		  

Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLH+ETLFVYINS
Sbjct: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHRETLFVYINS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 94
[Close]
BLAST of Spo09971.1 vs. NCBI nr
Match: gi|593266536|ref|XP_007135446.1| (hypothetical protein PHAVU_010G130300g [Phaseolus vulgaris])

HSP 1 Score: 175.3 bits (443), Expect = 5.200e-41
Identity = 81/94 (86.17%), Postives = 90/94 (95.74%), Query Frame = 1 

		  

Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          M++ESPS+VRKVVIHLRATGDAPILKQ KFK++GTD+FA VIDFLRRQLH+ETLFVY+NS
Sbjct: 1  MSAESPSSVRKVVIHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRETLFVYVNS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDE VIDL+NNFG DGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDELVIDLFNNFGFDGKLVVNYACSMAWG 94
[Close]
BLAST of Spo09971.1 vs. NCBI nr
Match: gi|1009111908|ref|XP_015865663.1| (PREDICTED: ubiquitin-like protein ATG12 [Ziziphus jujuba])

HSP 1 Score: 175.3 bits (443), Expect = 5.200e-41
Identity = 81/93 (87.10%), Postives = 89/93 (95.70%), Query Frame = 1 

		  

Query: 2  ASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINSA 61
          ++ESPS+VRKVV+HLRATGDAPILKQ KFK+ GTD+FA VIDFLRRQLH+ETLFVY+NSA
Sbjct: 3  STESPSSVRKVVVHLRATGDAPILKQAKFKILGTDKFAKVIDFLRRQLHRETLFVYVNSA 62

Query: 62 FSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          FSPNPDESVIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 63 FSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 95
[Close]
BLAST of Spo09971.1 vs. NCBI nr
Match: gi|1012234358|ref|XP_015939248.1| (PREDICTED: ubiquitin-like protein ATG12 [Arachis duranensis])

HSP 1 Score: 175.3 bits (443), Expect = 5.200e-41
Identity = 80/94 (85.11%), Postives = 89/94 (94.68%), Query Frame = 1 

		  

Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          MA+ESPS+VRKVV+HLRATGDAPILKQ KFK++G D+FA VIDFLRRQLH+ETLFVY+NS
Sbjct: 1  MAAESPSSVRKVVVHLRATGDAPILKQSKFKIAGADKFAKVIDFLRRQLHRETLFVYVNS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDES+IDLY NFG DGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDESIIDLYTNFGFDGKLVVNYACSMAWG 94
[Close]
BLAST of Spo09971.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RH85_SPIOL (Ubiquitin-like protein ATG12 OS=Spinacia oleracea GN=SOVF_067150 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 3.700e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 

		  

Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS
Sbjct: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 94
[Close]
BLAST of Spo09971.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BUM8_BETVU (Ubiquitin-like protein ATG12 OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g170070 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 8.300e-46
Identity = 93/94 (98.94%), Postives = 94/94 (100.00%), Query Frame = 1 

		  

Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLH+ETLFVYINS
Sbjct: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHRETLFVYINS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 94
[Close]
BLAST of Spo09971.1 vs. UniProtKB/TrEMBL
Match: V7AQ37_PHAVU (Ubiquitin-like protein ATG12 OS=Phaseolus vulgaris GN=PHAVU_010G130300g PE=3 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 3.600e-41
Identity = 81/94 (86.17%), Postives = 90/94 (95.74%), Query Frame = 1 

		  

Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          M++ESPS+VRKVVIHLRATGDAPILKQ KFK++GTD+FA VIDFLRRQLH+ETLFVY+NS
Sbjct: 1  MSAESPSSVRKVVIHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRETLFVYVNS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDE VIDL+NNFG DGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDELVIDLFNNFGFDGKLVVNYACSMAWG 94
[Close]
BLAST of Spo09971.1 vs. UniProtKB/TrEMBL
Match: A0A061GCF0_THECC (Ubiquitin-like protein ATG12 (Fragment) OS=Theobroma cacao GN=TCM_029125 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.100e-41
Identity = 80/94 (85.11%), Postives = 89/94 (94.68%), Query Frame = 1 

		  

Query: 1   MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
           MA+ESP++VRKVV+HLRATGDAPILKQ KFK+ GTD+FA VIDFLRRQLH++TLFVY+NS
Sbjct: 21  MAAESPTSVRKVVVHLRATGDAPILKQAKFKIPGTDKFAKVIDFLRRQLHRDTLFVYVNS 80

Query: 61  AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
           AFSPNPDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 81  AFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 114
[Close]
BLAST of Spo09971.1 vs. UniProtKB/TrEMBL
Match: A0A061GBK9_THECC (Ubiquitin-like protein ATG12 OS=Theobroma cacao GN=TCM_029125 PE=3 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.100e-41
Identity = 80/94 (85.11%), Postives = 89/94 (94.68%), Query Frame = 1 

		  

Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          MA+ESP++VRKVV+HLRATGDAPILKQ KFK+ GTD+FA VIDFLRRQLH++TLFVY+NS
Sbjct: 1  MAAESPTSVRKVVVHLRATGDAPILKQAKFKIPGTDKFAKVIDFLRRQLHRDTLFVYVNS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 94
[Close]
BLAST of Spo09971.1 vs. ExPASy Swiss-Prot
Match: ATG12_MEDTR (Ubiquitin-like protein ATG12 OS=Medicago truncatula GN=ATG12 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 1.600e-42
Identity = 79/93 (84.95%), Postives = 89/93 (95.70%), Query Frame = 1 

		  

Query: 2  ASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINSA 61
          A+ESP++VRKVV+HLRATGDAPILKQ KFK++GTD+FA VIDFLRRQLH+E+LFVY+NSA
Sbjct: 3  AAESPTSVRKVVVHLRATGDAPILKQSKFKIAGTDKFAKVIDFLRRQLHRESLFVYVNSA 62

Query: 62 FSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          FSPNPDE VIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 63 FSPNPDELVIDLYNNFGFDGKLVVNYACSMAWG 95
[Close]
BLAST of Spo09971.1 vs. ExPASy Swiss-Prot
Match: AT12B_ARATH (Ubiquitin-like protein ATG12B OS=Arabidopsis thaliana GN=ATG12B PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 6.100e-42
Identity = 78/94 (82.98%), Postives = 90/94 (95.74%), Query Frame = 1 

		  

Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          MA+ESP++V+K+V+HLRATG APILKQ KFKVSG+D+FA+VIDFLRRQLH ++LFVY+NS
Sbjct: 1  MATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDESVIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94
[Close]
BLAST of Spo09971.1 vs. ExPASy Swiss-Prot
Match: AT12A_ARATH (Ubiquitin-like protein ATG12A OS=Arabidopsis thaliana GN=ATG12A PE=1 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.000e-41
Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 1 

		  

Query: 3  SESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINSAF 62
          S SPS+VRKVV+HLRATG APILKQ KFK+ GTD+FA VIDFLRRQLH ++LFVY+NSAF
Sbjct: 5  SSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYVNSAF 64

Query: 63 SPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          SPNPDESVIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 65 SPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96
[Close]
BLAST of Spo09971.1 vs. ExPASy Swiss-Prot
Match: ATG12_ORYSI (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. indica GN=ATG12 PE=3 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 6.800e-33
Identity = 60/85 (70.59%), Postives = 76/85 (89.41%), Query Frame = 1 

		  

Query: 10 RKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINSAFSPNPDES 69
          +KVV+H R+TG+AP LKQ KFK+ G ++F  +IDFLRRQ+H++T+F+Y+NSAFSPNPDE 
Sbjct: 9  KKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPNPDEL 68

Query: 70 VIDLYNNFGIDGKLVVNYACSMAWG 95
          +IDLYNNFGIDG+LVVNYA SMAWG
Sbjct: 69 IIDLYNNFGIDGQLVVNYASSMAWG 93
[Close]
BLAST of Spo09971.1 vs. ExPASy Swiss-Prot
Match: ATG12_ORYSJ (Ubiquitin-like protein ATG12 OS=Oryza sativa subsp. japonica GN=ATG12 PE=3 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 6.800e-33
Identity = 60/85 (70.59%), Postives = 76/85 (89.41%), Query Frame = 1 

		  

Query: 10 RKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINSAFSPNPDES 69
          +KVV+H R+TG+AP LKQ KFK+ G ++F  +IDFLRRQ+H++T+F+Y+NSAFSPNPDE 
Sbjct: 9  KKVVVHFRSTGNAPQLKQSKFKIGGNEKFLKIIDFLRRQIHQDTVFLYVNSAFSPNPDEL 68

Query: 70 VIDLYNNFGIDGKLVVNYACSMAWG 95
          +IDLYNNFGIDG+LVVNYA SMAWG
Sbjct: 69 IIDLYNNFGIDGQLVVNYASSMAWG 93
[Close]
BLAST of Spo09971.1 vs. TAIR (Arabidopsis)
Match: AT3G13970.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 171.0 bits (432), Expect = 3.500e-43
Identity = 78/94 (82.98%), Postives = 90/94 (95.74%), Query Frame = 1 

		  

Query: 1  MASESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINS 60
          MA+ESP++V+K+V+HLRATG APILKQ KFKVSG+D+FA+VIDFLRRQLH ++LFVY+NS
Sbjct: 1  MATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLHSDSLFVYVNS 60

Query: 61 AFSPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          AFSPNPDESVIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 61 AFSPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 94
[Close]
BLAST of Spo09971.1 vs. TAIR (Arabidopsis)
Match: AT1G54210.1 (Ubiquitin-like superfamily protein)

HSP 1 Score: 168.7 bits (426), Expect = 1.700e-42
Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 1 

		  

Query: 3  SESPSAVRKVVIHLRATGDAPILKQQKFKVSGTDRFASVIDFLRRQLHKETLFVYINSAF 62
          S SPS+VRKVV+HLRATG APILKQ KFK+ GTD+FA VIDFLRRQLH ++LFVY+NSAF
Sbjct: 5  SSSPSSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVIDFLRRQLHSDSLFVYVNSAF 64

Query: 63 SPNPDESVIDLYNNFGIDGKLVVNYACSMAWG 95
          SPNPDESVIDLYNNFG DGKLVVNYACSMAWG
Sbjct: 65 SPNPDESVIDLYNNFGFDGKLVVNYACSMAWG 96
The following BLAST results are available for this feature:
BLAST of Spo09971.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902221237|gb|KNA18840.1|5.4e-46100.hypothetical protein SOVF_0671... [more]
gi|731348093|ref|XP_010685319.1|1.2e-4598.9PREDICTED: ubiquitin-like prot... [more]
gi|593266536|ref|XP_007135446.1|5.2e-4186.1hypothetical protein PHAVU_010... [more]
gi|1009111908|ref|XP_015865663.1|5.2e-4187.1PREDICTED: ubiquitin-like prot... [more]
gi|1012234358|ref|XP_015939248.1|5.2e-4185.1PREDICTED: ubiquitin-like prot... [more]
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BLAST of Spo09971.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RH85_SPIOL3.7e-46100.Ubiquitin-like protein ATG12 O... [more]
A0A0J8BUM8_BETVU8.3e-4698.9Ubiquitin-like protein ATG12 O... [more]
V7AQ37_PHAVU3.6e-4186.1Ubiquitin-like protein ATG12 O... [more]
A0A061GCF0_THECC8.1e-4185.1Ubiquitin-like protein ATG12 (... [more]
A0A061GBK9_THECC8.1e-4185.1Ubiquitin-like protein ATG12 O... [more]
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BLAST of Spo09971.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ATG12_MEDTR1.6e-4284.9Ubiquitin-like protein ATG12 O... [more]
AT12B_ARATH6.1e-4282.9Ubiquitin-like protein ATG12B ... [more]
AT12A_ARATH3.0e-4184.7Ubiquitin-like protein ATG12A ... [more]
ATG12_ORYSI6.8e-3370.5Ubiquitin-like protein ATG12 O... [more]
ATG12_ORYSJ6.8e-3370.5Ubiquitin-like protein ATG12 O... [more]
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BLAST of Spo09971.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G13970.13.5e-4382.9Ubiquitin-like superfamily pro... [more]
AT1G54210.11.7e-4284.7Ubiquitin-like superfamily pro... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007242Ubiquitin-like protein Atg12PANTHERPTHR13385AUTOPHAGY PROTEIN 12coord: 1..94
score: 3.0
IPR007242Ubiquitin-like protein Atg12PFAMPF04110APG12coord: 11..94
score: 2.4
NoneNo IPR availableGENE3D3.10.20.90coord: 4..94
score: 1.7

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000045 autophagosome assembly
biological_process GO:0000422 autophagy of mitochondrion
biological_process GO:0006995 cellular response to nitrogen starvation
biological_process GO:0006501 C-terminal protein lipidation
biological_process GO:0015031 protein transport
cellular_component GO:0005737 cytoplasm
cellular_component GO:0034274 Atg12-Atg5-Atg16 complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0034045 phagophore assembly site membrane
molecular_function GO:0019776 Atg8 ligase activity