Spo09975.1 (mRNA) | SpinachBase

Overview


Name	Spo09975.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	(Serine rich protein) (Transmembrane protein, putative)
Location	chr1 : 45091792 .. 45092160 (+)
Sequence length	369

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGTACCTACGCATACTCAACCCAAATAACATCTCAAAGACCGATAGCCATGGCACTGGCATTAGTTTCAGCTGTAATACTATCCCCATTATACACGACTAGGAGCAACGACACACGTTATGACATTAGATGGAATTCTGGGTTTGTTCTGCCAATGGTATTAGCAGGACTCATAATCGCGATTAAAACCACCTCATCACCATCATCCTCGTCGATGTCAGGGGAACGAAGATCAATCTTGTCATCAGACTCGTCATCAGTGTTTAGGGTTGGTGGTTCTTCATTGGGACTTGCTGGGGTTCTGGTAATGCTGATGCTTGTTCTGTCCTGGCAAGACTCTGTTCAACATTTTCTTTGGAAATGA

mRNA sequence

ATGGCTAGTACCTACGCATACTCAACCCAAATAACATCTCAAAGACCGATAGCCATGGCACTGGCATTAGTTTCAGCTGTAATACTATCCCCATTATACACGACTAGGAGCAACGACACACGTTATGACATTAGATGGAATTCTGGGTTTGTTCTGCCAATGGTATTAGCAGGACTCATAATCGCGATTAAAACCACCTCATCACCATCATCCTCGTCGATGTCAGGGGAACGAAGATCAATCTTGTCATCAGACTCGTCATCAGTGTTTAGGGTTGGTGGTTCTTCATTGGGACTTGCTGGGGTTCTGGTAATGCTGATGCTTGTTCTGTCCTGGCAAGACTCTGTTCAACATTTTCTTTGGAAATGA

Coding sequence (CDS)

ATGGCTAGTACCTACGCATACTCAACCCAAATAACATCTCAAAGACCGATAGCCATGGCACTGGCATTAGTTTCAGCTGTAATACTATCCCCATTATACACGACTAGGAGCAACGACACACGTTATGACATTAGATGGAATTCTGGGTTTGTTCTGCCAATGGTATTAGCAGGACTCATAATCGCGATTAAAACCACCTCATCACCATCATCCTCGTCGATGTCAGGGGAACGAAGATCAATCTTGTCATCAGACTCGTCATCAGTGTTTAGGGTTGGTGGTTCTTCATTGGGACTTGCTGGGGTTCTGGTAATGCTGATGCTTGTTCTGTCCTGGCAAGACTCTGTTCAACATTTTCTTTGGAAATGA

Protein sequence

MASTYAYSTQITSQRPIAMALALVSAVILSPLYTTRSNDTRYDIRWNSGFVLPMVLAGLIIAIKTTSSPSSSSMSGERRSILSSDSSSVFRVGGSSLGLAGVLVMLMLVLSWQDSVQHFLWK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo09975	Spo09975	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo09975.1	Spo09975.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09975.1.exon.1	Spo09975.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09975.1.CDS.1	Spo09975.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo09975.1 vs. NCBI nr
Match: gi|902240898|gb|KNA26121.1| (hypothetical protein SOVF_000380 [Spinacia oleracea])

HSP 1 Score: 226.5 bits (576), Expect = 2.500e-56
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1


		  
Query: 1   MASTYAYSTQITSQRPIAMALALVSAVILSPLYTTRSNDTRYDIRWNSGFVLPMVLAGLI 60
           MASTYAYSTQITSQRPIAMALALVSAVILSPLYTTRSNDTRYDIRWNSGFVLPMVLAGLI
Sbjct: 1   MASTYAYSTQITSQRPIAMALALVSAVILSPLYTTRSNDTRYDIRWNSGFVLPMVLAGLI 60

Query: 61  IAIKTTSSPSSSSMSGERRSILSSDSSSVFRVGGSSLGLAGVLVMLMLVLSWQDSVQHFL 120
           IAIKTTSSPSSSSMSGERRSILSSDSSSVFRVGGSSLGLAGVLVMLMLVLSWQDSVQHFL
Sbjct: 61  IAIKTTSSPSSSSMSGERRSILSSDSSSVFRVGGSSLGLAGVLVMLMLVLSWQDSVQHFL 120

Query: 121 WK 123
           WK
Sbjct: 121 WK 122

[Close]

BLAST of Spo09975.1 vs. NCBI nr
Match: gi|870852948|gb|KMT04829.1| (hypothetical protein BVRB_7g170000 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 193.4 bits (490), Expect = 2.400e-46
Identity = 102/122 (83.61%), Postives = 112/122 (91.80%), Query Frame = 1


		  
Query: 1   MASTYAYSTQITSQRPIAMALALVSAVILSPLYTTRSNDTRYDIRWNSGFVLPMVLAGLI 60
           M ++YAYS+  +SQRP+AMALALVSAVILSPLY TR+NDTRYDIRWNSGFVLPMVLAGLI
Sbjct: 1   MDTSYAYSSHYSSQRPVAMALALVSAVILSPLYVTRNNDTRYDIRWNSGFVLPMVLAGLI 60

Query: 61  IAIKTTSSPSSSSMSGERRSILSSDSSSVFRVGGSSLGLAGVLVMLMLVLSWQDSVQHFL 120
           IAIKTTSSP+ SSM+ ER  ILSSD SSVFR+GGSS GLAGVL+MLMLVLSWQDSVQHFL
Sbjct: 61  IAIKTTSSPTFSSMTRERSWILSSDPSSVFRIGGSSWGLAGVLIMLMLVLSWQDSVQHFL 120

Query: 121 WK 123
           WK
Sbjct: 121 WK 122

[Close]

BLAST of Spo09975.1 vs. NCBI nr
Match: gi|645243894|ref|XP_008228186.1| (PREDICTED: uncharacterized protein LOC103327624 [Prunus mume])

HSP 1 Score: 135.6 bits (340), Expect = 5.900e-29
Identity = 79/123 (64.23%), Postives = 94/123 (76.42%), Query Frame = 1


		  
Query: 2   ASTYAYSTQITSQRPIAMALALVSAVILSPLYTT-RSNDTRY-DIRWNSGFVLPMVLAGL 61
           A++YAY++  +SQR  AM LALVSA++LSPLY T R  D RY + +W+SGFVLPMVLAGL
Sbjct: 3   ATSYAYTSHSSSQRSTAMVLALVSAIVLSPLYVTNRKTDARYYETKWSSGFVLPMVLAGL 62

Query: 62  IIAIKTTSSPSSSSMSGERRSILSSDSSSVFRVGGSSLGLAGVLVMLMLVLSWQDSVQHF 121
           IIAIKTTSS SSSS S     + S + S V R+G SS GLAGVLV+LMLVLSWQ SV  F
Sbjct: 63  IIAIKTTSSSSSSSSSQGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVHEF 122

Query: 122 LWK 123
           LW+
Sbjct: 123 LWR 125

[Close]

BLAST of Spo09975.1 vs. NCBI nr
Match: gi|595974543|ref|XP_007217775.1| (hypothetical protein PRUPE_ppa016854mg [Prunus persica])

HSP 1 Score: 134.4 bits (337), Expect = 1.300e-28
Identity = 80/125 (64.00%), Postives = 95/125 (76.00%), Query Frame = 1


		  
Query: 2   ASTYAYSTQITSQRPIAMALALVSAVILSPLY-TTRSNDTRY-DIRWNSGFVLPMVLAGL 61
           A +YAY++  +SQR  AM LALVSA++LSPLY TTR  D RY + +W+SGFVLPMVLAGL
Sbjct: 3   APSYAYTSHSSSQRSTAMVLALVSAIVLSPLYVTTRKTDARYYETKWSSGFVLPMVLAGL 62

Query: 62  IIAIKTTSSPSSSSMSGERRS--ILSSDSSSVFRVGGSSLGLAGVLVMLMLVLSWQDSVQ 121
           IIAIKTTSS SSSS S  +    + S + S V R+G SS GLAGVLV+LMLVLSWQ SV 
Sbjct: 63  IIAIKTTSSSSSSSSSSTQGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVH 122

Query: 122 HFLWK 123
            FLW+
Sbjct: 123 EFLWR 127

[Close]

BLAST of Spo09975.1 vs. NCBI nr
Match: gi|645244285|ref|XP_008228360.1| (PREDICTED: uncharacterized protein LOC103327771 [Prunus mume])

HSP 1 Score: 133.7 bits (335), Expect = 2.200e-28
Identity = 79/124 (63.71%), Postives = 96/124 (77.42%), Query Frame = 1


		  
Query: 2   ASTYAYSTQITSQRPIAMALALVSAVILSPLY-TTRSNDTRY-DIRWNSGFVLPMVLAGL 61
           A++YAY++  +SQR  A+ LALVSA++LSPLY T+R  D RY + +W+SGFVLPMVLAGL
Sbjct: 3   ATSYAYTSHSSSQRSTAVVLALVSAIVLSPLYVTSRKTDARYYETKWSSGFVLPMVLAGL 62

Query: 62  IIAIKTTSSPSSSSMSGERRSILSSDSSS-VFRVGGSSLGLAGVLVMLMLVLSWQDSVQH 121
           IIAIKTTSS SSSS S +  S + S   S V R+G SS GLAGVLV+LMLVLSWQ SV  
Sbjct: 63  IIAIKTTSSSSSSSSSTQGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVHE 122

Query: 122 FLWK 123
           FLW+
Sbjct: 123 FLWR 126

[Close]

BLAST of Spo09975.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S345_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_000380 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 1.800e-56
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 1


		  
Query: 1   MASTYAYSTQITSQRPIAMALALVSAVILSPLYTTRSNDTRYDIRWNSGFVLPMVLAGLI 60
           MASTYAYSTQITSQRPIAMALALVSAVILSPLYTTRSNDTRYDIRWNSGFVLPMVLAGLI
Sbjct: 1   MASTYAYSTQITSQRPIAMALALVSAVILSPLYTTRSNDTRYDIRWNSGFVLPMVLAGLI 60

Query: 61  IAIKTTSSPSSSSMSGERRSILSSDSSSVFRVGGSSLGLAGVLVMLMLVLSWQDSVQHFL 120
           IAIKTTSSPSSSSMSGERRSILSSDSSSVFRVGGSSLGLAGVLVMLMLVLSWQDSVQHFL
Sbjct: 61  IAIKTTSSPSSSSMSGERRSILSSDSSSVFRVGGSSLGLAGVLVMLMLVLSWQDSVQHFL 120

Query: 121 WK 123
           WK
Sbjct: 121 WK 122

[Close]

BLAST of Spo09975.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BXU8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g170000 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.700e-46
Identity = 102/122 (83.61%), Postives = 112/122 (91.80%), Query Frame = 1


		  
Query: 1   MASTYAYSTQITSQRPIAMALALVSAVILSPLYTTRSNDTRYDIRWNSGFVLPMVLAGLI 60
           M ++YAYS+  +SQRP+AMALALVSAVILSPLY TR+NDTRYDIRWNSGFVLPMVLAGLI
Sbjct: 1   MDTSYAYSSHYSSQRPVAMALALVSAVILSPLYVTRNNDTRYDIRWNSGFVLPMVLAGLI 60

Query: 61  IAIKTTSSPSSSSMSGERRSILSSDSSSVFRVGGSSLGLAGVLVMLMLVLSWQDSVQHFL 120
           IAIKTTSSP+ SSM+ ER  ILSSD SSVFR+GGSS GLAGVL+MLMLVLSWQDSVQHFL
Sbjct: 61  IAIKTTSSPTFSSMTRERSWILSSDPSSVFRIGGSSWGLAGVLIMLMLVLSWQDSVQHFL 120

Query: 121 WK 123
           WK
Sbjct: 121 WK 122

[Close]

BLAST of Spo09975.1 vs. UniProtKB/TrEMBL
Match: M5WZ95_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016854mg PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 9.200e-29
Identity = 80/125 (64.00%), Postives = 95/125 (76.00%), Query Frame = 1


		  
Query: 2   ASTYAYSTQITSQRPIAMALALVSAVILSPLY-TTRSNDTRY-DIRWNSGFVLPMVLAGL 61
           A +YAY++  +SQR  AM LALVSA++LSPLY TTR  D RY + +W+SGFVLPMVLAGL
Sbjct: 3   APSYAYTSHSSSQRSTAMVLALVSAIVLSPLYVTTRKTDARYYETKWSSGFVLPMVLAGL 62

Query: 62  IIAIKTTSSPSSSSMSGERRS--ILSSDSSSVFRVGGSSLGLAGVLVMLMLVLSWQDSVQ 121
           IIAIKTTSS SSSS S  +    + S + S V R+G SS GLAGVLV+LMLVLSWQ SV 
Sbjct: 63  IIAIKTTSSSSSSSSSSTQGDSFVPSPEPSWVLRIGSSSWGLAGVLVLLMLVLSWQGSVH 122

Query: 122 HFLWK 123
            FLW+
Sbjct: 123 EFLWR 127

[Close]

BLAST of Spo09975.1 vs. UniProtKB/TrEMBL
Match: B9S5Q4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0652420 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.000e-28
Identity = 75/118 (63.56%), Postives = 91/118 (77.12%), Query Frame = 1


		  
Query: 7   YSTQITSQRPIAMALALVSAVILSPLYTTRSNDTR-YDIR-WNSGFVLPMVLAGLIIAIK 66
           Y++Q +SQR +AM LALVSAV+LSPLY  R ND R Y+ + WNSGFVLP+VL GLIIAI+
Sbjct: 6   YTSQNSSQRALAMVLALVSAVVLSPLYVQRRNDMRFYETKYWNSGFVLPVVLGGLIIAIR 65

Query: 67  TTSSPSSSSMSGERRSILSSDSSSVFRVGGSSLGLAGVLVMLMLVLSWQDSVQHFLWK 123
           TTSS SS+S+      I + D S V R+G SS GLAG++VMLMLVLSWQ+SVQ F WK
Sbjct: 66  TTSSSSSTSLGATGSLIPTPDPSWVLRIGSSSWGLAGIIVMLMLVLSWQESVQEFFWK 123

[Close]

BLAST of Spo09975.1 vs. UniProtKB/TrEMBL
Match: A0A061GCY3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_029139 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.700e-28
Identity = 79/123 (64.23%), Postives = 98/123 (79.67%), Query Frame = 1


		  
Query: 3   STYAYST-QITSQRPIAMALALVSAVILSPLYTTRSNDTRY-DIRWNSGFVLPMVLAGLI 62
           +TY Y++   TSQR +AMALAL++AV+LSPLY    N+TRY +++ +SGFVLPMVLAGLI
Sbjct: 2   ATYTYASGNNTSQRGVAMALALITAVVLSPLYVRGKNETRYYEMKLSSGFVLPMVLAGLI 61

Query: 63  IAIKTTSSPSSSSMSGERRSIL-SSDSSSVFRVGGSSLGLAGVLVMLMLVLSWQDSVQHF 122
            AI+TTSS SSS  SG R SI+ S D S V R+GGSS GLAG+LV+LMLVLSWQ+SVQ F
Sbjct: 62  AAIRTTSS-SSSMQSGARASIIPSPDPSWVLRIGGSSWGLAGILVLLMLVLSWQESVQEF 121

The following BLAST results are available for this feature:

BLAST of Spo09975.1 vs. NCBI nr
BLAST of Spo09975.1 vs. UniProtKB/TrEMBL
BLAST of Spo09975.1 vs. ExPASy Swiss-Prot
BLAST of Spo09975.1 vs. TAIR (Arabidopsis)

BLAST of Spo09975.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902240898\|gb\|KNA26121.1\|	2.5e-56	100.	hypothetical protein SOVF_0003...	[more]
gi\|870852948\|gb\|KMT04829.1\|	2.4e-46	83.6	hypothetical protein BVRB_7g17...	[more]
gi\|645243894\|ref\|XP_008228186.1\|	5.9e-29	64.2	PREDICTED: uncharacterized pro...	[more]
gi\|595974543\|ref\|XP_007217775.1\|	1.3e-28	64.0	hypothetical protein PRUPE_ppa...	[more]
gi\|645244285\|ref\|XP_008228360.1\|	2.2e-28	63.7	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo09975.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S345_SPIOL	1.8e-56	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BXU8_BETVU	1.7e-46	83.6	Uncharacterized protein OS=Bet...	[more]
M5WZ95_PRUPE	9.2e-29	64.0	Uncharacterized protein OS=Pru...	[more]
B9S5Q4_RICCO	2.0e-28	63.5	Putative uncharacterized prote...	[more]
A0A061GCY3_THECC	2.7e-28	64.2	Uncharacterized protein OS=The...	[more]

BLAST of Spo09975.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo09975.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35758	FAMILY NOT NAMED	coord: 1..122 score: 6.7
None	No IPR available	PANTHER	PTHR35758:SF1	SUBFAMILY NOT NAMED	coord: 1..122 score: 6.7