Spo10021.1 (mRNA)

Overview
NameSpo10021.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 44520929 .. 44526671 (-)
Sequence length372
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGGGTTCTGTCAAAACAAAAAGGCAGGGGCATTTATGTTGCATTCTCGAGAGAAAGATGCAAGCACAGTGATGGCATTGGAGAAAGCTGGTTTGTATATTTAAGTAAGATTTGTTTAACTTTTTTTTAGCCCTTTAATTTTCTCTCATGAAAAAATGAAATCCTACTCTAATTTACAGTGAAGGTGTCGCTTCAATTGAATTTTTTTTTTTGTAATGAAAAGGTAACTGCTTCTCTAAACGTTCTGAAAAAAAATCTATATAAGGTTACATGCTATAAGCAGAATACATAGTACTATCATTAGAAATCCGTTTGAAGATAAATTTCATTCCATCGTTACCGCTTATTACAGTTTGATCTTTCACAATTCTGTTACTTCAATAATGATAATTTTGGGTTTGGATGTCCGAATTCTACGTTTCCTCTCTCAAATGGCAGTTTCAATTCATTTTTGCAAATTTTTGATTTTTGTTTAGTAATTTGAATAATTGTTTACTGTTCAATTGCAGGAATTGAATTCAACATAACTACGGCAACCACACAAAGAAATTGGGTAATTTTTTTCCTCAAAAATGATTTGTGTATTTTATTTTTGTCACGGTTGGTGTAATGATGTTTTTTGCGATTTTCTTTGTGTATCTGACAAATTAATTAAACAAGGTAAATGTACTCGTGTTTAATTGTTCTTTCTTTTTTCTCTGCTCAGTAATTTAGTCCCAATATGTATATGTATCAAATATTTCTTCTTCTCTTTCCCTTCTCAGTGTATGTTGTAGATTTGATTGAGAATTTTGATTTTGGGATGGAATTGGAAAATAAAACTTATGAAGACATTCATTTGAAGAAGATTATTTCTTTTATGATTTTTGTTGTGTTTATGGGTTTTAGATTGTATATGGCTGTAGGCAAAATTTTTTGGGTGTGTATTACTTAAAGTAAATGGTTCAAGAAATCTATGATTAATTTGAGTTCAAGGTGTTGTCTGCATTATGATTCACTCCTCCACAATATGAGTCAAAGGGTTATTTTTTTTATTATTGATATGATTCAACTACAGTACAATATTACCTAAATTATACGGTTTGGATGATTGATTTCTTAGTTGCACTATTTTATGTTGTAAATTGTCATTTTCTATTCTCTCGATCCTTGATAAGAAATGTGTTATTTACACCCAAGTAAACAAAACCTTATACGAAGTATTACTTGATAATTTAGATCCATTGTTAGTTTATTCAAGAATTGATCAAGATATTGCGTAAGGTCTTCAAATCATAGGTTAAGATACTCTAAATTTCAAGGTTCATGATGGCCTCGTGGAGTAATGATACATCACATAGCTAGAAACAATACTGAAAATAATACTAAAATACAATCGGGTTGTATGTTGAAAGTTGAAGTTTCTAGAATGGTTTAATTTGATAGGGATATTTTTTTTCCAGTACCGGTGGAGAATGCAAGATAATGGATCATATTTGCAAGTATTAAAATCATAGTCACATTCTTGATGGACAGATGTGGTACAATTATTTGAGTAACTATGATTCAAAGGACAGACATGAGGTGATTTGCTTTCAGTACTACCAAGCAGATTTTAAGGATGTTCACCCAAAAACACATCCGTCTCTTATCCTATTCAATGTCTTTTACTACTAGGTGTAATTCCTATTAAATCAGTCTTTGAGTATTAAGATTGTCTGCTCTTTTTCTTATTGTTCATACGGAGTATAATCTTACGATTCCAAGTATTTAATTTACGTATCTATCAACATCCTCTAATCATCATAGGCATGTGTATTTTATGTGAAAGAAATTGTGTGTGAAATAGTGATTGTAGAACCATTTTTATACTTTGTATACAATTTTTATACACGAAGTATTTTATTGTGAAATAGTGATTGTATTTATATTGTCTGATGTATAGCATTGAAAATACTTCGTGTGTTTTTTTTACTTGATCTCTAATATATCCAGGAATTAAACGGGAGTTATGTCCTTCATGAGAATACACATATTATAGGAGTTGTAGGAGATAAGAAATCACTCACTCCATAGTAATCAAAGCGGCAAACACGCAAATAGAAAGGAAGTGAGCTCATCCTAGCTAGACTACTGCCATGTTGTATTATTCATATTATTAATACAGAGTATTTTTTTTATATTTTTTTTTTTTTTTTTGATAAGGAAAGAAAACCCAGACAGACTACCTGACACTATCCTTTCGAATGGGTGAATTACAATGACTCCAAGGTAATGCAATACTTCTTTTAGAATAGAACTTACAATGAAACTACGTTCTAACCTCATACTACCCCAGCCCCAGTTCCAAGTAAACTTGGTGAATAGACTTCAGAGATAGACGATTAGTCAAAGATAGAGTATTTTTTTTATATGTTATCAGGTTCTTTCAATATCTTTTTTATATGTTAATACAGAGTATCTACAACCTTTTAAAAGTGAGAACCTTAGTTTAACCATTCATGCAATAGTATTATCTCTAAAAAGCCCTTCGTATGACCTACTTCTGTGTTCCTTACTCTCTCCCTTGCTTCTCCTTCACCTCCATACTCTGCTCTCAAAATCCGCCCTCCTTTTCATCCTCTCTTTGTTTTGCTATTGTCATCTAGGGTTTGTTATCGGGTTTGCCTTTCTTTCTCCCTCGCCTCTCATTCACCTCCAGCCTTTTCTCTGCAGATCTGCTGTCCATGGAGGCGCGGCCTTCTTCTTCGTTGTCGACATCTTCTGTTTTTGCTCGGTGGAAACCTACCGGAGATGTGGACCCAATGCATTGGGTCGCGTGCGTTGCGTTAGGAGTCTCCCAGAAATCAGATCTCGGGAGCGTGCCTGGGAGATTTCCTACTGTTGTTTTTAGGGAACTTTTTTTTTTCCGGAATCGGTTTGGTATCTGGGCCTTGGTGCGTTTCTCTTCCGTCCTTTATGTGGTTTACTGTTTATTTATCATCTGCAATTGTGGTTTACCCTGGGTTCGTTTATTGCTTGAACATGTTTTCTTGTTTCTTTTGTCTTAACATTGGCCCAAATTGTTCCAGATCTCTATGCATACGATGCCGTTTTGTTTATTTTATTTTATTTAGTGGGTATTGATTGTTTGGATCTGGTCGGGTTTGTTGTTATTGAGCTGGGTTGTTTTTATTATGATTTTTCGGGGTAGAGTTTGGAGCTTTTTGTGTTTTAAATGGTGTAATTTTATGCTTTTGATCTTATTGTCACAATGTCTGTGCTTGTGGTTGTGTGGAAGAATTTAGATTTTTGTTTTGGGAGGTTGATTTAGTGGATTCAATTAACCCGAAAAGTTCGAGAGGATTGGCTTCTCCTTTCTCCCGCCCGCCCGCCTTCCAATTCCTCTCTCCTTTCAATATCGCCGACGCCATTTTTGAAACCTTTAATTTCCCAGATCTCAATTCTCCTCGATTTCATCCTAATATGGAGAGATCTGGTGAATTTTCGATCAATTAAAAATATTCCCAAAAAAAGATGATTACGGTTCCATAATTCACTGCATTAACATCCTACTTAAACTATGGATTATTATTCGCTTATGGAAAAAATTGTGATTTTCCCGTAGTATCATTGATAGGTTGTTTCCTAGCAGTGTTAAGGTTGATTTCTCCTTACATTTTCAAAATTTTAATATCCAGCTATTAATGTTCGAATTCTATTTCTAATTGTGTTATTTTTTAAAATAAAAGTTAGGTTCTGCGCCGATGAGTTTGTTTGATGACGATTCTATATTCGCCGTCTTTATAATCGCATTTAGGTAATTTGATGCTTATAATTGCACTAATTTCCCATCATTGATGTACAGTTAGGTAGTCAAAGTGGGAAAGTTTTGTTGAATTAGTTGATTTTGAGAATAGTGAAAATTATTCACAAGAATCACAACAATCAGAAGAAGAAGGATCAAGTTTCGTTCTTCAATTGAATTTTAGTCTTATGGTTTAGATTTTAGTTAATTAGCGACTGAAACTTTGCAATGACTCTTGGATTGCTTTAAAAAATTATCCGGAAATGGGGTGATGTTGCTATAACTCGTGATTTGGCTATGATGAGATAAGCAGCTTCTCATTAATCAAATTATCAATGATGTTTAATTTCTTACAGGAATGACTAAATTGATCTGTAGTTGTAGGGTTACAGATCAAAGACATGTATGCAAACATCATAGGGCTTGTCGATTAATTATGCTTCGCTCTTCCTTTATATTTTGATTAAGATTTTTCTTCCTTTTCATCTTGTAATTTTCGTTTCCTTTTAAAGTCACAGTTTTATGCCCAGAGTATTATGGAGTATTTGTTTATGGATTTCGATGTCATGTTGTCCTTACTTTTCTTATTTATAATCTCTTATGGTTCACTCTGGACTTTGTTCACCAGGTCATTCCTGAAATGGTGAGTGTTTGAGTAGAACCAAATCTTCATATATCGAGCTCTTATTGATGGTTCTGCAAGAGCTGGCCAGGTAGCTAAAGCCTTTGGTCTTTATGGGATTTAAGGTCTAAGGTATGGAGTTATTGTATATCTAGAGATTAATTGGCTTGATATCTAGACTACCTGCTCAGTAACTCTAAAAGCCAAATGAAGCATACCTATATTGCAGTAGAATGTGAAGCCAGATCGAGTTGTGTTCAATGCACTTATCACCGCTTGTGGCCAATCTGGAGCAGCAAAACGCCCCTTTGTATACTCCAGCAATCTCCTGTTTCTTTTTTTTCTTTTTACCAGGAAAATGCAATAATATTATTGTTTACTACTACCATTCTGAGCTTCTTTTTCCTTACATTTTATTTTTAAAAATTTATTTGGGTTGTTGAGGGTCATTTAATGTCTGGAGGAGAATCATGTCCATGGCTCAAGCTTCAGGGTGAGAAATACTAGGGACAGTATGCGAGCTTGAGGTGAGAGTTTTGCCCATGGCTCAAATCCTCTCTATTTTCAAGATTACAGAGTTATATGTGAATATGTGCTCTTCCTTTTTTTCTTAACTTGTCTATCCTACTATTTTCTTAATCTTCTTGTCCCCTTCTTATAATTATTATTTTTTAATGCTTAATAATTTTGTATGTGATTGTGTTGATTGCAGTTCATAATTTAGCAGATTTTTGGTTGACAATTCTTTAAGATCAGTCATCTACTTTTTATTGGGTTTTTCTTTATTCTGGCCAGTCATCTATTTTTTATTGACAAAAGTAATTGCTGATTTATATAGCCTTTTGAATTTGCCTCGAGGAGTGAATTATTTGCCTCCTTAGATGCATATATTGTTATATGTGGTTGGATACTGCCTAATAGTGCATATTCCATCTAGATCATTCTCCTTAGTGCAAGTCTACTTTTTATACACCCTCTTTCCGTAATCTCATATATTCCTGACTTGTTGCTCTCTACCTTTAGATAAAGGGTTCTATCGCATCATACTTTGGGCTAGATGGCTTTGACTAAAAGATATAATTGATCCACTTATGATGTTTATACTGAACAATAAAGAGAATATTAAACTTACTCTTGTCCAGTTTCTGTGCCTGTTCTAGAATTTGAGAACTTTTATCAAAATGGACCAGCTGTGTTAGCAAGCTAGACAACCCTGCCCTGACAGATTTTTAGTATATCTGGTCTCAGACTATAATGAAGAATTTTACTTGGGCTCTTGTCCACTTTATCGTGTTTGTAATTTGTTGGTAGTTGTACTGTGATTATGGACGAATCTATATCTTTGCCGTGA

mRNA sequence

ATGGAGGGGTTCTGTCAAAACAAAAAGGCAGGGGCATTTATGTTGCATTCTCGAGAGAAAGATGCAAGCACAGTGATGGCATTGGAGAAAGCTGATCTGCTGTCCATGGAGGCGCGGCCTTCTTCTTCGTTGTCGACATCTTCTGTTTTTGCTCGGTGGAAACCTACCGGAGATGTGGACCCAATGCATTGGGTCGCGTGCGTTGCGTTAGGAGTCTCCCAGAAATCAGATCTCGGGAGCGTGCCTGGGAGATTTCCTACTGTTTTAGGTTCTGCGCCGATGAGTTTGTTTGATGACGATTCTATATTCGCCGTCTTTATAATCGCATTTAGTTGTACTGTGATTATGGACGAATCTATATCTTTGCCGTGA

Coding sequence (CDS)

ATGGAGGGGTTCTGTCAAAACAAAAAGGCAGGGGCATTTATGTTGCATTCTCGAGAGAAAGATGCAAGCACAGTGATGGCATTGGAGAAAGCTGATCTGCTGTCCATGGAGGCGCGGCCTTCTTCTTCGTTGTCGACATCTTCTGTTTTTGCTCGGTGGAAACCTACCGGAGATGTGGACCCAATGCATTGGGTCGCGTGCGTTGCGTTAGGAGTCTCCCAGAAATCAGATCTCGGGAGCGTGCCTGGGAGATTTCCTACTGTTTTAGGTTCTGCGCCGATGAGTTTGTTTGATGACGATTCTATATTCGCCGTCTTTATAATCGCATTTAGTTGTACTGTGATTATGGACGAATCTATATCTTTGCCGTGA

Protein sequence

MEGFCQNKKAGAFMLHSREKDASTVMALEKADLLSMEARPSSSLSTSSVFARWKPTGDVDPMHWVACVALGVSQKSDLGSVPGRFPTVLGSAPMSLFDDDSIFAVFIIAFSCTVIMDESISLP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo10021Spo10021gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo10021.1Spo10021.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10021.1.CDS.4Spo10021.1.CDS.4CDS
Spo10021.1.CDS.3Spo10021.1.CDS.3CDS
Spo10021.1.CDS.2Spo10021.1.CDS.2CDS
Spo10021.1.CDS.1Spo10021.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10021.1.exon.4Spo10021.1.exon.4exon
Spo10021.1.exon.3Spo10021.1.exon.3exon
Spo10021.1.exon.2Spo10021.1.exon.2exon
Spo10021.1.exon.1Spo10021.1.exon.1exon


Homology
[Close]
BLAST of Spo10021.1 vs. NCBI nr
Match: gi|902228612|gb|KNA21190.1| (hypothetical protein SOVF_045780 [Spinacia oleracea])

HSP 1 Score: 113.6 bits (283), Expect = 2.400e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1 

		  

Query: 36 MEARPSSSLSTSSVFARWKPTGDVDPMHWVACVALGVSQKSDLGSVPGRFPTVL 90
          MEARPSSSLSTSSVFARWKPTGDVDPMHWVACVALGVSQKSDLGSVPGRFPTV+
Sbjct: 1  MEARPSSSLSTSSVFARWKPTGDVDPMHWVACVALGVSQKSDLGSVPGRFPTVV 54
[Close]
BLAST of Spo10021.1 vs. NCBI nr
Match: gi|902228611|gb|KNA21189.1| (hypothetical protein SOVF_045770 [Spinacia oleracea])

HSP 1 Score: 66.2 bits (160), Expect = 4.400e-8
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 1 

		  

Query: 1  MEGFCQNKKAGAFMLHSREKDASTVMALEKADL 34
          MEGFCQNKKAGAFMLHSREKDASTVMALEKA L
Sbjct: 1  MEGFCQNKKAGAFMLHSREKDASTVMALEKAGL 33
[Close]
BLAST of Spo10021.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNV0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045780 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.700e-22
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 1 

		  

Query: 36 MEARPSSSLSTSSVFARWKPTGDVDPMHWVACVALGVSQKSDLGSVPGRFPTVL 90
          MEARPSSSLSTSSVFARWKPTGDVDPMHWVACVALGVSQKSDLGSVPGRFPTV+
Sbjct: 1  MEARPSSSLSTSSVFARWKPTGDVDPMHWVACVALGVSQKSDLGSVPGRFPTVV 54
[Close]
BLAST of Spo10021.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQM3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045770 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.100e-8
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 1 

		  

Query: 1  MEGFCQNKKAGAFMLHSREKDASTVMALEKADL 34
          MEGFCQNKKAGAFMLHSREKDASTVMALEKA L
Sbjct: 1  MEGFCQNKKAGAFMLHSREKDASTVMALEKAGL 33
The following BLAST results are available for this feature:
BLAST of Spo10021.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902228612|gb|KNA21190.1|2.4e-2298.1hypothetical protein SOVF_0457... [more]
gi|902228611|gb|KNA21189.1|4.4e-896.9hypothetical protein SOVF_0457... [more]
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BLAST of Spo10021.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RNV0_SPIOL1.7e-2298.1Uncharacterized protein OS=Spi... [more]
A0A0K9RQM3_SPIOL3.1e-896.9Uncharacterized protein OS=Spi... [more]
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BLAST of Spo10021.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo10021.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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