Spo10024.1 (mRNA) | SpinachBase

Overview


Name	Spo10024.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	40S ribosomal protein S17-like protein
Location	chr1 : 44554474 .. 44554914 (-)
Sequence length	441

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGAGTTCGCACAAAAACCGTGAAGAAGTCCTCACGCCAAGTGATTGAGAAGTACTACTCAAAGATGACATTGGATTTCCACACCAACAAGAAGGTTCTAGAAGAGGTGGCCATCATCCCATCAAAGAGGCTGCGCAACAAGATCGCAGGATTCTCCACCCATCTGATGAAACGAATCCAGAAGGGCCCAGTTCGTGGGATCTCGCTCAAGTTGCAGGAAGAAGAGAGAGAAAGACGCATGGACTTCGTACCTGATGAATCCGCCATTAAAATCGACCACATCGAGGTTGATAAGGAGACCATTGATATGCTTGCTTCTCTTGGCATGGCTGATTTGCCCGGTGTTGTTCAGATGGTTGCTGAGCCAGCTCCTGTTGTTGCTGCCGCTGGTGGTTTTGGACGTGGTGGTGGTGCTGGTGGTGCCAGGAGGTACTGA

mRNA sequence

ATGGGTCGAGTTCGCACAAAAACCGTGAAGAAGTCCTCACGCCAAGTGATTGAGAAGTACTACTCAAAGATGACATTGGATTTCCACACCAACAAGAAGGTTCTAGAAGAGGTGGCCATCATCCCATCAAAGAGGCTGCGCAACAAGATCGCAGGATTCTCCACCCATCTGATGAAACGAATCCAGAAGGGCCCAGTTCGTGGGATCTCGCTCAAGTTGCAGGAAGAAGAGAGAGAAAGACGCATGGACTTCGTACCTGATGAATCCGCCATTAAAATCGACCACATCGAGGTTGATAAGGAGACCATTGATATGCTTGCTTCTCTTGGCATGGCTGATTTGCCCGGTGTTGTTCAGATGGTTGCTGAGCCAGCTCCTGTTGTTGCTGCCGCTGGTGGTTTTGGACGTGGTGGTGGTGCTGGTGGTGCCAGGAGGTACTGA

Coding sequence (CDS)

ATGGGTCGAGTTCGCACAAAAACCGTGAAGAAGTCCTCACGCCAAGTGATTGAGAAGTACTACTCAAAGATGACATTGGATTTCCACACCAACAAGAAGGTTCTAGAAGAGGTGGCCATCATCCCATCAAAGAGGCTGCGCAACAAGATCGCAGGATTCTCCACCCATCTGATGAAACGAATCCAGAAGGGCCCAGTTCGTGGGATCTCGCTCAAGTTGCAGGAAGAAGAGAGAGAAAGACGCATGGACTTCGTACCTGATGAATCCGCCATTAAAATCGACCACATCGAGGTTGATAAGGAGACCATTGATATGCTTGCTTCTCTTGGCATGGCTGATTTGCCCGGTGTTGTTCAGATGGTTGCTGAGCCAGCTCCTGTTGTTGCTGCCGCTGGTGGTTTTGGACGTGGTGGTGGTGCTGGTGGTGCCAGGAGGTACTGA

Protein sequence

MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQMVAEPAPVVAAAGGFGRGGGAGGARRY

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo10024	Spo10024	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo10024.1	Spo10024.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10024.1.CDS.1	Spo10024.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10024.1.exon.1	Spo10024.1.exon.1	exon

Homology

[Close]

BLAST of Spo10024.1 vs. NCBI nr
Match: gi|902228607|gb|KNA21185.1| (hypothetical protein SOVF_045730 [Spinacia oleracea])

HSP 1 Score: 275.0 bits (702), Expect = 7.500e-71
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
           VAEPAPVVAAAGGFGRGGGAGGARRY
Sbjct: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 146

[Close]

BLAST of Spo10024.1 vs. NCBI nr
Match: gi|902224279|gb|KNA19745.1| (hypothetical protein SOVF_058020 [Spinacia oleracea])

HSP 1 Score: 266.9 bits (681), Expect = 2.000e-68
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
           VAEPAPVVAAAGGFGR  GAGGARRY
Sbjct: 121 VAEPAPVVAAAGGFGR--GAGGARRY 144

[Close]

BLAST of Spo10024.1 vs. NCBI nr
Match: gi|698524103|ref|XP_009758854.1| (PREDICTED: 40S ribosomal protein S17-like [Nicotiana sylvestris])

HSP 1 Score: 229.6 bits (584), Expect = 3.600e-57
Identity = 124/146 (84.93%), Postives = 132/146 (90.41%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D IEVDKET+DML++LGM+DLPGVV+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQ 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
            AEP   VAA   +GRG G  G R+Y
Sbjct: 121 AAEP-QAVAALPTYGRGAGGFGGRKY 145

[Close]

BLAST of Spo10024.1 vs. NCBI nr
Match: gi|870854935|gb|KMT06683.1| (hypothetical protein BVRB_7g158470 isoform A [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 228.4 bits (581), Expect = 8.000e-57
Identity = 124/146 (84.93%), Postives = 129/146 (88.36%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVP+ SAIK DHIEVDKETIDMLASLGMADLPG+++M
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEFSAIKTDHIEVDKETIDMLASLGMADLPGLIEM 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
                      G FGR  GAGG RRY
Sbjct: 121 TPGTIAYDTVPGAFGR--GAGGPRRY 144

[Close]

BLAST of Spo10024.1 vs. NCBI nr
Match: gi|731344855|ref|XP_010683628.1| (PREDICTED: 40S ribosomal protein S17-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 228.4 bits (581), Expect = 8.000e-57
Identity = 124/146 (84.93%), Postives = 129/146 (88.36%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVP+ SAIK DHIEVDKETIDMLASLGMADLPG+++M
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEFSAIKTDHIEVDKETIDMLASLGMADLPGLIEM 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
                      G FGR  GAGG RRY
Sbjct: 121 TPGTIAYDTVPGAFGR--GAGGPRRY 144

[Close]

BLAST of Spo10024.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNU5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045730 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 5.200e-71
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
           VAEPAPVVAAAGGFGRGGGAGGARRY
Sbjct: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 146

[Close]

BLAST of Spo10024.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJS5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_058020 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.400e-68
Identity = 144/146 (98.63%), Postives = 144/146 (98.63%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
           VAEPAPVVAAAGGFGR  GAGGARRY
Sbjct: 121 VAEPAPVVAAAGGFGR--GAGGARRY 144

[Close]

BLAST of Spo10024.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C349_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g158470 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 5.600e-57
Identity = 124/146 (84.93%), Postives = 129/146 (88.36%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVP+ SAIK DHIEVDKETIDMLASLGMADLPG+++M
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEFSAIKTDHIEVDKETIDMLASLGMADLPGLIEM 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
                      G FGR  GAGG RRY
Sbjct: 121 TPGTIAYDTVPGAFGR--GAGGPRRY 144

[Close]

BLAST of Spo10024.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C3N8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g158470 PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 5.600e-57
Identity = 124/146 (84.93%), Postives = 129/146 (88.36%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVP+ SAIK DHIEVDKETIDMLASLGMADLPG+++M
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPEFSAIKTDHIEVDKETIDMLASLGMADLPGLIEM 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
                      G FGR  GAGG RRY
Sbjct: 121 TPGTIAYDTVPGAFGR--GAGGPRRY 144

[Close]

BLAST of Spo10024.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HDM8_SOLCH (Putative 40S ribosomal protein S17-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 5.600e-57
Identity = 126/146 (86.30%), Postives = 133/146 (91.10%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKID IEVDKET+DML+SLGM+DLPGVV+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDLIEVDKETLDMLSSLGMSDLPGVVKQ 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
            AEP   VAA   FGRG G G  R+Y
Sbjct: 121 AAEP-QAVAALPTFGRGAG-GFGRKY 144

[Close]

BLAST of Spo10024.1 vs. ExPASy Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 227.3 bits (578), Expect = 1.100e-58
Identity = 124/146 (84.93%), Postives = 133/146 (91.10%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D IEVDKET+DML++LGM+DLPGVV+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQ 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
            AEP   VAA   +GRGGG G  R+Y
Sbjct: 121 AAEP-QAVAALPSYGRGGG-GFGRKY 144

[Close]

BLAST of Spo10024.1 vs. ExPASy Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 211.8 bits (538), Expect = 4.900e-54
Identity = 113/139 (81.29%), Postives = 124/139 (89.21%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKID ++VDKET++MLASLGM+D+ G+ Q+
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 VAEPAPVVAAAGGFGRGGG 140
             + A   A    FGR  G
Sbjct: 121 ETQQAMAPAV---FGRPAG 136

[Close]

BLAST of Spo10024.1 vs. ExPASy Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 211.5 bits (537), Expect = 6.400e-54
Identity = 116/146 (79.45%), Postives = 124/146 (84.93%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D I+VDKET++MLASLGM+D PG+   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGI--S 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
             EP   +A    F   GG    RRY
Sbjct: 121 AVEPQQAMAPIAAF---GGGRAPRRY 141

[Close]

BLAST of Spo10024.1 vs. ExPASy Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 208.8 bits (530), Expect = 4.100e-53
Identity = 111/135 (82.22%), Postives = 119/135 (88.15%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D I+VDKET++MLASLGM+D  G+   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGI--S 120

Query: 121 VAEPAPVVAAAGGFG 136
             EP   +A    FG
Sbjct: 121 AVEPQQAMAPIAAFG 133

[Close]

BLAST of Spo10024.1 vs. ExPASy Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=2 SV=3)

HSP 1 Score: 205.7 bits (522), Expect = 3.500e-52
Identity = 114/146 (78.08%), Postives = 123/146 (84.25%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D I+VDKET++MLASLGM+D  G+   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGI--S 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
             +P   +A    F   GG    RRY
Sbjct: 121 AVDPQQAMAPIPAF---GGGRAPRRY 141

[Close]

BLAST of Spo10024.1 vs. TAIR (Arabidopsis)
Match: AT3G10610.1 (Ribosomal S17 family protein)

HSP 1 Score: 211.8 bits (538), Expect = 2.700e-55
Identity = 113/139 (81.29%), Postives = 124/139 (89.21%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKID ++VDKET++MLASLGM+D+ G+ Q+
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 VAEPAPVVAAAGGFGRGGG 140
             + A   A    FGR  G
Sbjct: 121 ETQQAMAPAV---FGRPAG 136

[Close]

BLAST of Spo10024.1 vs. TAIR (Arabidopsis)
Match: AT5G04800.1 (Ribosomal S17 family protein)

HSP 1 Score: 211.5 bits (537), Expect = 3.600e-55
Identity = 116/146 (79.45%), Postives = 124/146 (84.93%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D I+VDKET++MLASLGM+D PG+   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGI--S 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
             EP   +A    F   GG    RRY
Sbjct: 121 AVEPQQAMAPIAAF---GGGRAPRRY 141

[Close]

BLAST of Spo10024.1 vs. TAIR (Arabidopsis)
Match: AT2G05220.1 (Ribosomal S17 family protein)

HSP 1 Score: 208.8 bits (530), Expect = 2.300e-54
Identity = 111/135 (82.22%), Postives = 119/135 (88.15%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D I+VDKET++MLASLGM+D  G+   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGI--S 120

Query: 121 VAEPAPVVAAAGGFG 136
             EP   +A    FG
Sbjct: 121 AVEPQQAMAPIAAFG 133

[Close]

BLAST of Spo10024.1 vs. TAIR (Arabidopsis)
Match: AT2G04390.1 (Ribosomal S17 family protein)

HSP 1 Score: 205.7 bits (522), Expect = 2.000e-53
Identity = 114/146 (78.08%), Postives = 123/146 (84.25%), Query Frame = 1


		  
Query: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKVLEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIEKYYS+MTLDFHTNKK+LEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDHIEVDKETIDMLASLGMADLPGVVQM 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D I+VDKET++MLASLGM+D  G+   
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGI--S 120

Query: 121 VAEPAPVVAAAGGFGRGGGAGGARRY 147
             +P   +A    F   GG    RRY
Sbjct: 121 AVDPQQAMAPIPAF---GGGRAPRRY 141

The following BLAST results are available for this feature:

BLAST of Spo10024.1 vs. NCBI nr
BLAST of Spo10024.1 vs. UniProtKB/TrEMBL
BLAST of Spo10024.1 vs. ExPASy Swiss-Prot
BLAST of Spo10024.1 vs. TAIR (Arabidopsis)

BLAST of Spo10024.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902228607\|gb\|KNA21185.1\|	7.5e-71	100.	hypothetical protein SOVF_0457...	[more]
gi\|902224279\|gb\|KNA19745.1\|	2.0e-68	98.6	hypothetical protein SOVF_0580...	[more]
gi\|698524103\|ref\|XP_009758854.1\|	3.6e-57	84.9	PREDICTED: 40S ribosomal prote...	[more]
gi\|870854935\|gb\|KMT06683.1\|	8.0e-57	84.9	hypothetical protein BVRB_7g15...	[more]
gi\|731344855\|ref\|XP_010683628.1\|	8.0e-57	84.9	PREDICTED: 40S ribosomal prote...	[more]

BLAST of Spo10024.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RNU5_SPIOL	5.2e-71	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9RJS5_SPIOL	1.4e-68	98.6	Uncharacterized protein OS=Spi...	[more]
A0A0J8C349_BETVU	5.6e-57	84.9	Uncharacterized protein OS=Bet...	[more]
A0A0J8C3N8_BETVU	5.6e-57	84.9	Uncharacterized protein OS=Bet...	[more]
A0A0V0HDM8_SOLCH	5.6e-57	86.3	Putative 40S ribosomal protein...	[more]

BLAST of Spo10024.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RS17_SOLLC	1.1e-58	84.9	40S ribosomal protein S17 OS=S...	[more]
RS173_ARATH	4.9e-54	81.2	40S ribosomal protein S17-3 OS...	[more]
RS174_ARATH	6.4e-54	79.4	40S ribosomal protein S17-4 OS...	[more]
RS172_ARATH	4.1e-53	82.2	40S ribosomal protein S17-2 OS...	[more]
RS171_ARATH	3.5e-52	78.0	40S ribosomal protein S17-1 OS...	[more]

BLAST of Spo10024.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4


Match Name	E-value	Identity	Description
AT3G10610.1	2.7e-55	81.2	Ribosomal S17 family protein	[more]
AT5G04800.1	3.6e-55	79.4	Ribosomal S17 family protein	[more]
AT2G05220.1	2.3e-54	82.2	Ribosomal S17 family protein	[more]
AT2G04390.1	2.0e-53	78.0	Ribosomal S17 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001210	Ribosomal protein S17e	GENE3D	1.10.60.20		coord: 1..62 score: 4.0
IPR001210	Ribosomal protein S17e	HAMAP	MF_00511	Ribosomal_S17e	coord: 1..63 score: 20
IPR001210	Ribosomal protein S17e	PANTHER	PTHR10732	40S RIBOSOMAL PROTEIN S17	coord: 1..145 score: 1.2E
IPR001210	Ribosomal protein S17e	PFAM	PF00833	Ribosomal_S17e	coord: 1..116 score: 7.9
IPR001210	Ribosomal protein S17e	unknown	SSF116820	Rps17e-like	coord: 1..62 score: 9.55
IPR018273	Ribosomal protein S17e, conserved site	PROSITE	PS00712	RIBOSOMAL_S17E	coord: 41..56 scor

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome