Spo10061.1 (mRNA)

Overview
NameSpo10061.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionNuclear pore complex protein
Locationchr1 : 45213633 .. 45217027 (-)
Sequence length627
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAACCTGGGTCCTGAACGAGATTAAAAACCGTTAAACCATGAACCCATTAAAATTTAAAATCCATTTGCATTTAGCCTCTTTTGGCGCTTAAAACCTCAGTTTCTAGGGTTTGGTTTCAGTGTCAAATAATCGAAAAATTCAATAATCCACCACTCTATTTGGGGGTTTTCCGATCATGGACGTTGATATGGACACTTCTCCGAGCTACTTTGATCCTCATGACACCTCAGCATCAGAGAGCAATTTCGTCGTTATGGGTATTCTTTTTCTCAATTCATTTTTGTATTTCTACTTTTTTTTTCCCGAGTTGAAATTGCTTCACATTGTCGAATTTCATCTCAATTTTGAGCATTTTTTGCTTTGCATTTAGTAATTGATATTCTAATGATTGATTTAGTAATTATTGAACGATGAAGTTTGCCTTTTTAATGCTTCAAGCAAGTTATAGCGCCATTTTTCGGGGTTTTCGATTTTCCGTATAGTATATACTAGCAGTCTAGCTATAGTTACTAGTGAGGTTATGTTGGATTAGGTTGGAATGATCCTATTTGGGATATTTTAGCTACTTTCATTGATGTAAGGAATTTTGTTAAACCTGAATTGATGAATTGGGGATTTTTTAGGTTTGGCGAGAGAAGAAGCAGTGAATTAAGCAGTGAATTAAGCAGTGTAGGTATTTTAGCAGTCCAGTGAAGCAAAGTGAGAGAGGGGAAATTGAGAAAAGGGTAAAGTTACGCAATAAAGAAAGGTGGCACTATTGCTGATATAGACCTCTTTCGGAGCTTTATGCTGGTAGATTGTAGCTTCAGAAAACTAATTGAAGTCCAGTGTTTGCACCCTATCCCAGACATGGTCCTCTCAAGAGANGGGGGGGGGGGGGGGGGGGGGGGGGAGAGGGAAGAGGAAAGATTGGAAGTGTAAGAGGGACAATCCTATGGCTATAGGGATTTAGAGATGGTCAATTTTAGCCAAGCCAAACTGCAAAATACAAATCTCAATAACAGCGACACCAATGTCAAAAGACTTTCTCTCAAAGCCTTAATCTATAGTATCAGAAAACTATGTATTTTTGTGGGGTGAGTACTCATGAGTGGCAAAGTGAGGGGGTTTTCTCTATACATAACACATGTCTAAAAAAGCCTTCTTAACATGGTATTATCATATGTGGGTTTAGCTCCGAAGTTAACAATACCTACGTGTTTCCAGATGCTCCGTCTTAGATATCCTCCCTCTACCCCCTTATCTCTCTGAGGATGTGTTTTGCTCAAGTCCTTGAAATATGTCTTCAGTTGGAAGGTGATAAATTGAAAAGCAGGAGATTTTTTCATCTGTTATGGGCAATTGATTATATTGATTGCAATTAGTTGGGTTTAAGTGCAGGAAGAGGCCAAGCACTTCTCCACTGCAAGATAGTCCAACCTCCAACTATGGTGAAGGCAGAATGTCTAATACTGCATTGTTCCTTGAAAACAGCAATTAAGAGGTTGAGAGTTTGGATTATCGAGAAGGAACGCCTTCCAGGACACATTCTGCTTACAAAAGAAGATTCCCTGATAGTCAGATAATACCAGAATTTCGCAGTGCTGTTGATTCATCTCACCGGGTAGGAAGCCATTCGTTAAAAGCATGCAAGATCGAGGAGAATGTGCTGGATTCTGGCGAAACAACATTTTCTTTATTCGCTTCTCTTTTAGATTCTTCCAGCCGAGGTGCTTAAATTGACCCTATTATTGAGCTATATCTGTACTTCAGTTCTATCCGCATTGGTTATGTAGCTTATGAGTTGTTGTTTGTGTCAGGGCTTATATCAATTCCTGACCTAATTCTTCAGTTTGAAAAATCATGCCGTGATGTTTCTGAAACTATAAGGTACTTATTTTATTTTTATTTTTATGGTTATCCTATACTCCGTGTATCATATACAAGCTATTGTATAAAGTTTAATTATACTGACCATTTGTACTGTGTTTATTTGATATGACAATTTGTTTGTATAAAACTTATTCTAACACCAGTCTTATTAGTTGTTAGTGTTACTATAAGATATCTTATCGGTGACATTTATGTACATAAAAGATTCTTGTTATCAAATCACCATCGTGAAGTTGTGGATTCTTGATTTGTTGTGTCACTTGTGTGTCTTGTGGGTGATACTACTCCTTTTGTGCTCAGAGTGACTGTCCTGTTTTCTATTTTTAGATGTTTTGAATGGACTGTAATATACGTTCACTGTATATTTGTTCCATTGAAATCTTGTACAGTTAAGATATTTGAATAATTATTTTCCTCGATGATGGTATTGACTCTACTGAGGAGGAATTGAGGAGGATGCCATCAACCTTCTAATAATTGTTGAGTCATTAATGTTACTTACATATATATTTTACTAGTCAATTTAATATTGTTACATTTATCTGTGCTCAATAATCTGAATAAGAAATTTCCAGGAAAATAAGGATGACTATTGTGTTGGAAATAAATCGTAGTTATTGCGAAAGTGACAATCTTGATGTTGAGATCCTTGAGGCTATATTGTCAACCTAGATCTCTTTGGAGGAAGTCTTTATGGTGCCATGGTTTCAGAAAATATGCCAATAGATGAAGCATGCTGATAACTATTTTTTATAAAGTCTTACTGAACCATTGGTTTCTTAATTCCTAGTTATGAGGGATTATCACTCATTAGCCATGCAATTCATATAGAACTATTAAATGCTTATACAGGTTGATATGACCAACGTTATAATTATGTTGTGTCAAATGTTATATTGTTATGTGATACCACGAAAATGTACACATCTGTGATGCGACCACTACTAGGATTGCAACCGCTACCACGATTTGAAACCAAGTTGGGAGGTTAACATGCTTGGCTGCTATTTGAGTTTTGTGGTTGGAGAGGAAACCAGAGGCTTTATGGGATACATTAGTTTTTCTCTCGATGATGTAAACATGATCTGCATGTTCTTGTTTCCATCTGTTTGTTAGAACTCTTTGTCTTCTAATGATGTTCTCTCTCAATGTTCTTAACAATTTTTTATGTGTGTTAGACTTCTGTAATGTAGGTATTATTCATATGCTAGAATCCTCCTGTAAAAAATTCCTTGTGCTATTTGGAAAGTATGCCATTGAGCTGTGTCTTGTCATTCTATTAAATGCTGTTTAGTTTAATGCTGGTTCTACCTCTTTTCCTATTTCCGGGTAGGAAAGGTTTCTTACTGGTTCTCTGATGATATATTTTCATGCCTCTTTTTTAAAAATTATATATGGTCTTCCTCACAATTTTGCCACAGGTATGGCTCTACTGAGAGGCATCGGATTGTAGAAGACAGATTAATGCGACAAAAAGCTCAGCTCTTGCTTGATGAAGCTGCTTCCTGGTCACTTCTTTGA

mRNA sequence

AAAACCTGGGTCCTGAACGAGATTAAAAACCGTTAAACCATGAACCCATTAAAATTTAAAATCCATTTGCATTTAGCCTCTTTTGGCGCTTAAAACCTCAGTTTCTAGGGTTTGGTTTCAGTGTCAAATAATCGAAAAATTCAATAATCCACCACTCTATTTGGGGGTTTTCCGATCATGGACGTTGATATGGACACTTCTCCGAGCTACTTTGATCCTCATGACACCTCAGCATCAGAGAGCAATTTCGTCGTTATGGGAAGAGGCCAAGCACTTCTCCACTGCAAGATAGTCCAACCTCCAACTATGATAATACCAGAATTTCGCAGTGCTGTTGATTCATCTCACCGGGTAGGAAGCCATTCGTTAAAAGCATGCAAGATCGAGGAGAATGTGCTGGATTCTGGCGAAACAACATTTTCTTTATTCGCTTCTCTTTTAGATTCTTCCAGCCGAGGGCTTATATCAATTCCTGACCTAATTCTTCAGTTTGAAAAATCATGCCGTGATGTTTCTGAAACTATAAGGTATGGCTCTACTGAGAGGCATCGGATTGTAGAAGACAGATTAATGCGACAAAAAGCTCAGCTCTTGCTTGATGAAGCTGCTTCCTGGTCACTTCTTTGA

Coding sequence (CDS)

ATGGACGTTGATATGGACACTTCTCCGAGCTACTTTGATCCTCATGACACCTCAGCATCAGAGAGCAATTTCGTCGTTATGGGAAGAGGCCAAGCACTTCTCCACTGCAAGATAGTCCAACCTCCAACTATGATAATACCAGAATTTCGCAGTGCTGTTGATTCATCTCACCGGGTAGGAAGCCATTCGTTAAAAGCATGCAAGATCGAGGAGAATGTGCTGGATTCTGGCGAAACAACATTTTCTTTATTCGCTTCTCTTTTAGATTCTTCCAGCCGAGGGCTTATATCAATTCCTGACCTAATTCTTCAGTTTGAAAAATCATGCCGTGATGTTTCTGAAACTATAAGGTATGGCTCTACTGAGAGGCATCGGATTGTAGAAGACAGATTAATGCGACAAAAAGCTCAGCTCTTGCTTGATGAAGCTGCTTCCTGGTCACTTCTTTGA

Protein sequence

MDVDMDTSPSYFDPHDTSASESNFVVMGRGQALLHCKIVQPPTMIIPEFRSAVDSSHRVGSHSLKACKIEENVLDSGETTFSLFASLLDSSSRGLISIPDLILQFEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo10061Spo10061gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo10061.1Spo10061.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10061.1.utr5p.1Spo10061.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10061.1.CDS.5Spo10061.1.CDS.5CDS
Spo10061.1.CDS.4Spo10061.1.CDS.4CDS
Spo10061.1.CDS.3Spo10061.1.CDS.3CDS
Spo10061.1.CDS.2Spo10061.1.CDS.2CDS
Spo10061.1.CDS.1Spo10061.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10061.1.exon.5Spo10061.1.exon.5exon
Spo10061.1.exon.4Spo10061.1.exon.4exon
Spo10061.1.exon.3Spo10061.1.exon.3exon
Spo10061.1.exon.2Spo10061.1.exon.2exon
Spo10061.1.exon.1Spo10061.1.exon.1exon


Homology
[Close]
BLAST of Spo10061.1 vs. NCBI nr
Match: gi|902203987|gb|KNA14741.1| (hypothetical protein SOVF_104830, partial [Spinacia oleracea])

HSP 1 Score: 207.2 bits (526), Expect = 2.000e-50
Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 41  PPTMIIPEFRSAVDSSHRVGSHSLKACKIEENVLDSGETTFSLFASLLDSSSRGLISIPD 100
           P + IIPEFRSAVDSSHRVGSHSLKACKIEENVLDSGETTFSLFASLLDSSSRGLISIPD
Sbjct: 23  PDSQIIPEFRSAVDSSHRVGSHSLKACKIEENVLDSGETTFSLFASLLDSSSRGLISIPD 82

Query: 101 LILQFEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL 150
           LILQFEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL
Sbjct: 83  LILQFEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL 131
[Close]
BLAST of Spo10061.1 vs. NCBI nr
Match: gi|902213742|gb|KNA17326.1| (hypothetical protein SOVF_080910, partial [Spinacia oleracea])

HSP 1 Score: 203.4 bits (516), Expect = 2.800e-49
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 1 

		  

Query: 41  PPTMIIPEFRSAVDSSHRVGSHSLKACKIEENVLDSGETTFSLFASLLDSSSRGLISIPD 100
           P + IIPEFRSA+DSSHR GSHSLKACKIEE+VLDSGETTFSLFASLLDSSSRGLISIPD
Sbjct: 84  PDSQIIPEFRSAIDSSHRAGSHSLKACKIEEDVLDSGETTFSLFASLLDSSSRGLISIPD 143

Query: 101 LILQFEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL 150
           LILQFEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL
Sbjct: 144 LILQFEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL 192
[Close]
BLAST of Spo10061.1 vs. NCBI nr
Match: gi|731348005|ref|XP_010685275.1| (PREDICTED: nuclear pore complex protein NUP107 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 175.3 bits (443), Expect = 8.200e-41
Identity = 86/109 (78.90%), Postives = 98/109 (89.91%), Query Frame = 1 

		  

Query: 41  PPTMIIPEFRSAVDSSHRVGSHSLKACKIEENVLDSGETTFSLFASLLDSSSRGLISIPD 100
           P +  I +FRS  D SH+ GSHSLKACKIEE+V D+GE+TFSLFASLLDS++ GL+SIPD
Sbjct: 84  PDSQTITDFRSGADLSHQAGSHSLKACKIEEDVQDAGESTFSLFASLLDSANEGLLSIPD 143

Query: 101 LILQFEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL 150
           LILQFEKSCRDVSE+IRYGS+ERHRIVEDRLMRQKAQ L+DEAASWSLL
Sbjct: 144 LILQFEKSCRDVSESIRYGSSERHRIVEDRLMRQKAQFLIDEAASWSLL 192
[Close]
BLAST of Spo10061.1 vs. NCBI nr
Match: gi|870852913|gb|KMT04794.1| (hypothetical protein BVRB_7g169670 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 175.3 bits (443), Expect = 8.200e-41
Identity = 86/109 (78.90%), Postives = 98/109 (89.91%), Query Frame = 1 

		  

Query: 41  PPTMIIPEFRSAVDSSHRVGSHSLKACKIEENVLDSGETTFSLFASLLDSSSRGLISIPD 100
           P +  I +FRS  D SH+ GSHSLKACKIEE+V D+GE+TFSLFASLLDS++ GL+SIPD
Sbjct: 84  PDSQTITDFRSGADLSHQAGSHSLKACKIEEDVQDAGESTFSLFASLLDSANEGLLSIPD 143

Query: 101 LILQFEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL 150
           LILQFEKSCRDVSE+IRYGS+ERHRIVEDRLMRQKAQ L+DEAASWSLL
Sbjct: 144 LILQFEKSCRDVSESIRYGSSERHRIVEDRLMRQKAQFLIDEAASWSLL 192
[Close]
BLAST of Spo10061.1 vs. NCBI nr
Match: gi|590621025|ref|XP_007024694.1| (Nuclear pore complex protein Nup107 isoform 1 [Theobroma cacao])

HSP 1 Score: 151.0 bits (380), Expect = 1.700e-33
Identity = 77/105 (73.33%), Postives = 92/105 (87.62%), Query Frame = 1 

		  

Query: 46  IPEFRSAVDSSHRVGSHSLKACKIEENV-LDSGETTFSLFASLLDSSSRGLISIPDLILQ 105
           I E    VDS  R+GSH+LKACKIEE++  D+G+TTF+LFASLLDS+ +GLI IPDLILQ
Sbjct: 17  IAETDDGVDSIRRLGSHALKACKIEEDLSADNGDTTFALFASLLDSALQGLIPIPDLILQ 76

Query: 106 FEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL 150
           FE+SCR+VSE+IRYGS  RHR+VED+LMRQKAQLLLDEAA+WSLL
Sbjct: 77  FERSCRNVSESIRYGSNIRHRVVEDKLMRQKAQLLLDEAATWSLL 121
[Close]
BLAST of Spo10061.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R5G2_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_104830 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 1.400e-50
Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 41  PPTMIIPEFRSAVDSSHRVGSHSLKACKIEENVLDSGETTFSLFASLLDSSSRGLISIPD 100
           P + IIPEFRSAVDSSHRVGSHSLKACKIEENVLDSGETTFSLFASLLDSSSRGLISIPD
Sbjct: 23  PDSQIIPEFRSAVDSSHRVGSHSLKACKIEENVLDSGETTFSLFASLLDSSSRGLISIPD 82

Query: 101 LILQFEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL 150
           LILQFEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL
Sbjct: 83  LILQFEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL 131
[Close]
BLAST of Spo10061.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCT5_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_080910 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.000e-49
Identity = 103/109 (94.50%), Postives = 106/109 (97.25%), Query Frame = 1 

		  

Query: 41  PPTMIIPEFRSAVDSSHRVGSHSLKACKIEENVLDSGETTFSLFASLLDSSSRGLISIPD 100
           P + IIPEFRSA+DSSHR GSHSLKACKIEE+VLDSGETTFSLFASLLDSSSRGLISIPD
Sbjct: 84  PDSQIIPEFRSAIDSSHRAGSHSLKACKIEEDVLDSGETTFSLFASLLDSSSRGLISIPD 143

Query: 101 LILQFEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL 150
           LILQFEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL
Sbjct: 144 LILQFEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL 192
[Close]
BLAST of Spo10061.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BXR8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g169670 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.700e-41
Identity = 86/109 (78.90%), Postives = 98/109 (89.91%), Query Frame = 1 

		  

Query: 41  PPTMIIPEFRSAVDSSHRVGSHSLKACKIEENVLDSGETTFSLFASLLDSSSRGLISIPD 100
           P +  I +FRS  D SH+ GSHSLKACKIEE+V D+GE+TFSLFASLLDS++ GL+SIPD
Sbjct: 84  PDSQTITDFRSGADLSHQAGSHSLKACKIEEDVQDAGESTFSLFASLLDSANEGLLSIPD 143

Query: 101 LILQFEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL 150
           LILQFEKSCRDVSE+IRYGS+ERHRIVEDRLMRQKAQ L+DEAASWSLL
Sbjct: 144 LILQFEKSCRDVSESIRYGSSERHRIVEDRLMRQKAQFLIDEAASWSLL 192
[Close]
BLAST of Spo10061.1 vs. UniProtKB/TrEMBL
Match: A0A061GCM0_THECC (Nuclear pore complex protein Nup107 isoform 1 OS=Theobroma cacao GN=TCM_029188 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.200e-33
Identity = 77/105 (73.33%), Postives = 92/105 (87.62%), Query Frame = 1 

		  

Query: 46  IPEFRSAVDSSHRVGSHSLKACKIEENV-LDSGETTFSLFASLLDSSSRGLISIPDLILQ 105
           I E    VDS  R+GSH+LKACKIEE++  D+G+TTF+LFASLLDS+ +GLI IPDLILQ
Sbjct: 17  IAETDDGVDSIRRLGSHALKACKIEEDLSADNGDTTFALFASLLDSALQGLIPIPDLILQ 76

Query: 106 FEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL 150
           FE+SCR+VSE+IRYGS  RHR+VED+LMRQKAQLLLDEAA+WSLL
Sbjct: 77  FERSCRNVSESIRYGSNIRHRVVEDKLMRQKAQLLLDEAATWSLL 121
[Close]
BLAST of Spo10061.1 vs. UniProtKB/TrEMBL
Match: A0A061GDT3_THECC (Nuclear pore complex protein Nup107 isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_029188 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.200e-33
Identity = 77/105 (73.33%), Postives = 92/105 (87.62%), Query Frame = 1 

		  

Query: 46  IPEFRSAVDSSHRVGSHSLKACKIEENV-LDSGETTFSLFASLLDSSSRGLISIPDLILQ 105
           I E    VDS  R+GSH+LKACKIEE++  D+G+TTF+LFASLLDS+ +GLI IPDLILQ
Sbjct: 107 IAETDDGVDSIRRLGSHALKACKIEEDLSADNGDTTFALFASLLDSALQGLIPIPDLILQ 166

Query: 106 FEKSCRDVSETIRYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL 150
           FE+SCR+VSE+IRYGS  RHR+VED+LMRQKAQLLLDEAA+WSLL
Sbjct: 167 FERSCRNVSESIRYGSNIRHRVVEDKLMRQKAQLLLDEAATWSLL 211
[Close]
BLAST of Spo10061.1 vs. ExPASy Swiss-Prot
Match: NU107_ARATH (Nuclear pore complex protein NUP107 OS=Arabidopsis thaliana GN=NUP107 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.700e-28
Identity = 66/93 (70.97%), Postives = 81/93 (87.10%), Query Frame = 1 

		  

Query: 58  RVGSHSLKACKIEENVL-DSGETTFSLFASLLDSSSRGLISIPDLILQFEKSCRDVSETI 117
           RV S SLKACKIE + L +SG+TTF+LFASL DS+ +GL+SIP+L+L+ E+SCR+VS++I
Sbjct: 109 RVESQSLKACKIENDELAESGDTTFALFASLFDSALQGLMSIPNLMLRLEESCRNVSQSI 168

Query: 118 RYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL 150
           RYGS  RHR VED+LMRQKAQLLL EAASWSLL
Sbjct: 169 RYGSDIRHRAVEDKLMRQKAQLLLGEAASWSLL 201
[Close]
BLAST of Spo10061.1 vs. TAIR (Arabidopsis)
Match: AT3G14120.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 126.3 bits (316), Expect = 1.500e-29
Identity = 66/93 (70.97%), Postives = 81/93 (87.10%), Query Frame = 1 

		  

Query: 58  RVGSHSLKACKIEENVL-DSGETTFSLFASLLDSSSRGLISIPDLILQFEKSCRDVSETI 117
           RV S SLKACKIE + L +SG+TTF+LFASL DS+ +GL+SIP+L+L+ E+SCR+VS++I
Sbjct: 109 RVESQSLKACKIENDELAESGDTTFALFASLFDSALQGLMSIPNLMLRLEESCRNVSQSI 168

Query: 118 RYGSTERHRIVEDRLMRQKAQLLLDEAASWSLL 150
           RYGS  RHR VED+LMRQKAQLLL EAASWSLL
Sbjct: 169 RYGSDIRHRAVEDKLMRQKAQLLLGEAASWSLL 201
The following BLAST results are available for this feature:
BLAST of Spo10061.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902203987|gb|KNA14741.1|2.0e-5097.2hypothetical protein SOVF_1048... [more]
gi|902213742|gb|KNA17326.1|2.8e-4994.5hypothetical protein SOVF_0809... [more]
gi|731348005|ref|XP_010685275.1|8.2e-4178.9PREDICTED: nuclear pore comple... [more]
gi|870852913|gb|KMT04794.1|8.2e-4178.9hypothetical protein BVRB_7g16... [more]
gi|590621025|ref|XP_007024694.1|1.7e-3373.3Nuclear pore complex protein N... [more]
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BLAST of Spo10061.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R5G2_SPIOL1.4e-5097.2Uncharacterized protein (Fragm... [more]
A0A0K9RCT5_SPIOL2.0e-4994.5Uncharacterized protein (Fragm... [more]
A0A0J8BXR8_BETVU5.7e-4178.9Uncharacterized protein OS=Bet... [more]
A0A061GCM0_THECC1.2e-3373.3Nuclear pore complex protein N... [more]
A0A061GDT3_THECC1.2e-3373.3Nuclear pore complex protein N... [more]
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BLAST of Spo10061.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NU107_ARATH2.7e-2870.9Nuclear pore complex protein N... [more]
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BLAST of Spo10061.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G14120.11.5e-2970.9FUNCTIONS IN: molecular_functi... [more]
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GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0005643 nuclear pore