Spo10238.1 (mRNA) | SpinachBase

Overview


Name	Spo10238.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Signal transducer and transcription activator isoform 1
Location	chr3 : 16100259 .. 16102018 (+)
Sequence length	1052

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGCCTTCCCCTCTTTCTTCTCACAAACACACACAAAAAGAAGAGAGAAAAAAAACCAGAGGAGAGAGAGAGAAGAAGAATTTGTTTTTTGAAAAAACAATGGCCGCCTATATTTCAGAATCTGATTCCCAAGAAAAACAATTAATCACCACCCAAACAACCCCTACCTCCGAACAACAACGATATGAAGAAGAAGAGGTGATTGTTTATAAGCCAAAGCCCAAAACCAGGAAACCCAAAAAGAGGGTCCCACAAGTATGTTTAGAAGGGTATGTAGAAGACGATGATTTGCCCAGAACAAAGAGCTTAACGGATGATGATCTTGATGAGTTAAAGGGTTGTTTGGATTTAGGGTTTGGGTTTAGTTATGATGAAATCCCTGAACTTTGTAATACTTTGCCTGCTTTGGAGCTTTGTTATTCTATGTCTCAGAAGTTTCTAGATGACCATCCTAATCAACAACATCACCTCCACCAGGGAGGTGGTTCCGGTGGTGTTTCTTCTGATACGGCTTCGTTTTCCGGTTCCGAAAGTTCCAGTCCCATGCCTACCTGGAAGATCTCTAGTCCTGGTGAGTTGATTTTATTTTTTTTGTAATTTTGTTGATCTGGGTTTGATTTTATCTTTGTTTTATGATCTGGTCTTGATTTGGATTTTCTTGGTTTTTGGTGATCTGGTTTATAATTTGATTAATTCATTAGAGAATTGTTTTGCTTTGGTTTAGAACTAATAGCTGTAGATTAAATCCATGGTATAATTTTAACTAGTAATGTGAAGATAAATTGGACGGAGGTAGTATTGACGGATTCAAGATCGATTTTGATCAATTTTAGGACAAATGATCACTTAATGATGAGCCTATATATTTGTGTGTTTATGTTCAGAATCACTGTAATTTGGGTTAGATTATTAATTTGGAGTAGATCTGATTGATTCTGTGGCAAATTTTTAATTAAAATAGGTTGAGCTAATCGAGGGGAACTTTAGATTATTCGAATTCAAGATGTTCCATGATCTGTGCTGACAAATTTGTTACAAGAACGAAAGACTTGATTGTATGCACATGTTATCTGCAGACTAAGTAGAAACCAATCAATAATCATTTCACATTGTTATTGCTGTGTATTGGATTTTGTGATTTTTTCAGCTGTTAATAGTTGGCGTTTGTTAGGCATGAGTTGGCAAAATTGCAAATTAATTGACCTAATTATGTAGTTTTCATATCTATTCTTTGCTCACATTGTGCTGTGCCTTACCTTGTTTGCTTTCCTTTGTTTAGGTGACCATCCTGAAGATGTCAAAGCGAGGCTTAAGTTTTGGGCTCAGACCGTGGCTTGTACTGTCAAGTTATGCAGCTAGATTGCAATGGCGTCGACTGATTTGATCAGTCAAGGATGAAGGATGTCTTATTTTCCCTAAAAGATGAATATTCTCAACTTTCGTGATCAAAATGGATCTTTGAATGGGAAGATGAGCATGCCAGGACCGCCAAACTTTAGAACTTTGCGACTGAATTTTTGAACAAGATGGATTCAGAACCATTTGAGAAGAGGGCCGTGTCAGGTCTGAGATGATTCAACTAACCGATGATGGTCTGACATTTAGTCTTCAACTTAGATGTTAGCCTGTGAATTATTTGTAATGATAGATGAAATAAAAGAGATGGAAATTGAATAAAACTAGCTTCATTAATCACTATTTTGGTCTATTTGCAACTGTTGTTCTGCTGTTATATTTCTATCTGCTTATTCTACTGCGA

mRNA sequence

TTCGCCTTCCCCTCTTTCTTCTCACAAACACACACAAAAAGAAGAGAGAAAAAAAACCAGAGGAGAGAGAGAGAAGAAGAATTTGTTTTTTGAAAAAACAATGGCCGCCTATATTTCAGAATCTGATTCCCAAGAAAAACAATTAATCACCACCCAAACAACCCCTACCTCCGAACAACAACGATATGAAGAAGAAGAGGTGATTGTTTATAAGCCAAAGCCCAAAACCAGGAAACCCAAAAAGAGGGTCCCACAAGTATGTTTAGAAGGGTATGTAGAAGACGATGATTTGCCCAGAACAAAGAGCTTAACGGATGATGATCTTGATGAGTTAAAGGGTTGTTTGGATTTAGGGTTTGGGTTTAGTTATGATGAAATCCCTGAACTTTGTAATACTTTGCCTGCTTTGGAGCTTTGTTATTCTATGTCTCAGAAGTTTCTAGATGACCATCCTAATCAACAACATCACCTCCACCAGGGAGGTGGTTCCGGTGGTGTTTCTTCTGATACGGCTTCGTTTTCCGGTTCCGAAAGTTCCAGTCCCATGCCTACCTGGAAGATCTCTAGTCCTGGTGACCATCCTGAAGATGTCAAAGCGAGGCTTAAGTTTTGGGCTCAGACCGTGGCTTGTACTGTCAAGTTATGCAGCTAGATTGCAATGGCGTCGACTGATTTGATCAGTCAAGGATGAAGGATGTCTTATTTTCCCTAAAAGATGAATATTCTCAACTTTCGTGATCAAAATGGATCTTTGAATGGGAAGATGAGCATGCCAGGACCGCCAAACTTTAGAACTTTGCGACTGAATTTTTGAACAAGATGGATTCAGAACCATTTGAGAAGAGGGCCGTGTCAGGTCTGAGATGATTCAACTAACCGATGATGGTCTGACATTTAGTCTTCAACTTAGATGTTAGCCTGTGAATTATTTGTAATGATAGATGAAATAAAAGAGATGGAAATTGAATAAAACTAGCTTCATTAATCACTATTTTGGTCTATTTGCAACTGTTGTTCTGCTGTTATATTTCTATCTGCTTATTCTACTGCGA

Coding sequence (CDS)

ATGGCCGCCTATATTTCAGAATCTGATTCCCAAGAAAAACAATTAATCACCACCCAAACAACCCCTACCTCCGAACAACAACGATATGAAGAAGAAGAGGTGATTGTTTATAAGCCAAAGCCCAAAACCAGGAAACCCAAAAAGAGGGTCCCACAAGTATGTTTAGAAGGGTATGTAGAAGACGATGATTTGCCCAGAACAAAGAGCTTAACGGATGATGATCTTGATGAGTTAAAGGGTTGTTTGGATTTAGGGTTTGGGTTTAGTTATGATGAAATCCCTGAACTTTGTAATACTTTGCCTGCTTTGGAGCTTTGTTATTCTATGTCTCAGAAGTTTCTAGATGACCATCCTAATCAACAACATCACCTCCACCAGGGAGGTGGTTCCGGTGGTGTTTCTTCTGATACGGCTTCGTTTTCCGGTTCCGAAAGTTCCAGTCCCATGCCTACCTGGAAGATCTCTAGTCCTGGTGACCATCCTGAAGATGTCAAAGCGAGGCTTAAGTTTTGGGCTCAGACCGTGGCTTGTACTGTCAAGTTATGCAGCTAG

Protein sequence

MAAYISESDSQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVEDDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQQHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVKLCS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo10238	Spo10238	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo10238.1	Spo10238.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10238.1.exon.1	Spo10238.1.exon.1	exon
Spo10238.1.exon.2	Spo10238.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10238.1.utr5p.1	Spo10238.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10238.1.CDS.1	Spo10238.1.CDS.1	CDS
Spo10238.1.CDS.2	Spo10238.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10238.1.utr3p.1	Spo10238.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo10238.1 vs. NCBI nr
Match: gi|902149881|gb|KNA05349.1| (hypothetical protein SOVF_191210 [Spinacia oleracea])

HSP 1 Score: 370.2 bits (949), Expect = 2.100e-99
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1

		  
Query: 1   MAAYISESDSQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE 60
           MAAYISESDSQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE
Sbjct: 1   MAAYISESDSQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE 60

Query: 61  DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQ 120
           DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQ
Sbjct: 61  DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQ 120

Query: 121 QHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVK 180
           QHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVK
Sbjct: 121 QHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVK 180

Query: 181 LCS 184
           LCS
Sbjct: 181 LCS 183

[Close]

BLAST of Spo10238.1 vs. NCBI nr
Match: gi|731322300|ref|XP_010671814.1| (PREDICTED: uncharacterized protein LOC104888508 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 271.2 bits (692), Expect = 1.400e-69
Identity = 145/194 (74.74%), Postives = 157/194 (80.93%), Query Frame = 1

		  
Query: 1   MAAYISESDSQEKQLITT----------QTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRV 60
           MAAY  +SDSQ+ + I            Q     +QQ  EEEEVIV++PKP+ RKPKKRV
Sbjct: 1   MAAYNLQSDSQDSREILIEQQQLEQQQHQQQKIEKQQEEEEEEVIVWQPKPRNRKPKKRV 60

Query: 61  PQVCLEGYVEDDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMS 120
           PQVCLEGYVEDDDLPRTKSLTDDDLDELKGC+DLGFGFSYDEIPELCNTLPALELCYSMS
Sbjct: 61  PQVCLEGYVEDDDLPRTKSLTDDDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSMS 120

Query: 121 QKFLDDHPNQQHHLHQGGGSGGVSSDTASFS-GSESSSPMPTWKISSPGDHPEDVKARLK 180
           QKFLDDHPNQ +       S  ++SDTAS S GSE+SSPMPTWKISSPGDHPEDVKARLK
Sbjct: 121 QKFLDDHPNQLNPK-----SLSIASDTASSSSGSETSSPMPTWKISSPGDHPEDVKARLK 180

Query: 181 FWAQTVACTVKLCS 184
           FWAQ VACTVKLCS
Sbjct: 181 FWAQAVACTVKLCS 189

[Close]

BLAST of Spo10238.1 vs. NCBI nr
Match: gi|743883588|ref|XP_011037064.1| (PREDICTED: uncharacterized protein LOC105134374 [Populus euphratica])

HSP 1 Score: 193.0 bits (489), Expect = 4.700e-46
Identity = 100/145 (68.97%), Postives = 111/145 (76.55%), Query Frame = 1

		  
Query: 44  RKPKKRVPQVCLEGYVE-----DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCN 103
           RK +++  QV LEGYVE     +D+L RTKSLTDDDLDELKGCLDLGFGFSYDEIPELCN
Sbjct: 70  RKIQRKKSQVLLEGYVEGSSNSEDELKRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCN 129

Query: 104 TLPALELCYSMSQKFLDDHPNQQHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPG 163
           TLPALELCYSMSQKFLD+H       H+        ++ A      SSSP+  WKISSPG
Sbjct: 130 TLPALELCYSMSQKFLDEHQKP----HESSSPAEAEAEAA------SSSPIANWKISSPG 189

Query: 164 DHPEDVKARLKFWAQTVACTVKLCS 184
           DHPEDVKARLKFWAQTVACTV+LCS
Sbjct: 190 DHPEDVKARLKFWAQTVACTVRLCS 204

[Close]

BLAST of Spo10238.1 vs. NCBI nr
Match: gi|567901172|ref|XP_006443074.1| (hypothetical protein CICLE_v10022453mg [Citrus clementina])

HSP 1 Score: 193.0 bits (489), Expect = 4.700e-46
Identity = 108/177 (61.02%), Postives = 127/177 (71.75%), Query Frame = 1

		  
Query: 10  SQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE---DDDLPR 69
           +QE Q +T   +   E+   E EE++      K    KK+  QV LEGYVE   +DDL R
Sbjct: 27  NQEPQFLTITRSGFDEE---ESEELL------KNENKKKKKNQVLLEGYVETDSEDDLKR 86

Query: 70  TKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQQHHLHQ 129
           TKSLTD+DLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKF+D+H +Q+    +
Sbjct: 87  TKSLTDEDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFMDEHQSQKS--PE 146

Query: 130 GGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVKLCS 184
             G+  VS+D         SSP+  WKISSPGDHPEDVKARLK+WAQ VACTV+LCS
Sbjct: 147 SHGNSPVSTDPV-------SSPIANWKISSPGDHPEDVKARLKYWAQAVACTVRLCS 185

[Close]

BLAST of Spo10238.1 vs. NCBI nr
Match: gi|566211702|ref|XP_006372903.1| (hypothetical protein POPTR_0017s06130g [Populus trichocarpa])

HSP 1 Score: 191.4 bits (485), Expect = 1.400e-45
Identity = 101/149 (67.79%), Postives = 111/149 (74.50%), Query Frame = 1

		  
Query: 40  KPKTRKPKKRVPQVCLEGYVE-----DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIP 99
           K   RK  ++  QV LEGYVE     +D+L RTKSLTDDDLDELKGCLDLGFGFSYDEIP
Sbjct: 66  KGSLRKILRKKSQVLLEGYVEGRSNSEDELKRTKSLTDDDLDELKGCLDLGFGFSYDEIP 125

Query: 100 ELCNTLPALELCYSMSQKFLDDHPNQQHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKI 159
           ELCNTLPALELCYSMSQKFLD+H                SS   + + + SSSP+  WKI
Sbjct: 126 ELCNTLPALELCYSMSQKFLDEHQKPPES----------SSPAEAEAEAASSSPIANWKI 185

Query: 160 SSPGDHPEDVKARLKFWAQTVACTVKLCS 184
           SSPGDHPEDVKARLKFWAQTVACTV+LCS
Sbjct: 186 SSPGDHPEDVKARLKFWAQTVACTVRLCS 204

[Close]

BLAST of Spo10238.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDJ8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_191210 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 1.500e-99
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1

		  
Query: 1   MAAYISESDSQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE 60
           MAAYISESDSQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE
Sbjct: 1   MAAYISESDSQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE 60

Query: 61  DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQ 120
           DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQ
Sbjct: 61  DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQ 120

Query: 121 QHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVK 180
           QHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVK
Sbjct: 121 QHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVK 180

Query: 181 LCS 184
           LCS
Sbjct: 181 LCS 183

[Close]

BLAST of Spo10238.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CRB7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g054830 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 9.400e-70
Identity = 145/194 (74.74%), Postives = 157/194 (80.93%), Query Frame = 1

		  
Query: 1   MAAYISESDSQEKQLITT----------QTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRV 60
           MAAY  +SDSQ+ + I            Q     +QQ  EEEEVIV++PKP+ RKPKKRV
Sbjct: 1   MAAYNLQSDSQDSREILIEQQQLEQQQHQQQKIEKQQEEEEEEVIVWQPKPRNRKPKKRV 60

Query: 61  PQVCLEGYVEDDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMS 120
           PQVCLEGYVEDDDLPRTKSLTDDDLDELKGC+DLGFGFSYDEIPELCNTLPALELCYSMS
Sbjct: 61  PQVCLEGYVEDDDLPRTKSLTDDDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSMS 120

Query: 121 QKFLDDHPNQQHHLHQGGGSGGVSSDTASFS-GSESSSPMPTWKISSPGDHPEDVKARLK 180
           QKFLDDHPNQ +       S  ++SDTAS S GSE+SSPMPTWKISSPGDHPEDVKARLK
Sbjct: 121 QKFLDDHPNQLNPK-----SLSIASDTASSSSGSETSSPMPTWKISSPGDHPEDVKARLK 180

Query: 181 FWAQTVACTVKLCS 184
           FWAQ VACTVKLCS
Sbjct: 181 FWAQAVACTVKLCS 189

[Close]

BLAST of Spo10238.1 vs. UniProtKB/TrEMBL
Match: A0A067DKT5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g029447mg PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.300e-46
Identity = 108/177 (61.02%), Postives = 127/177 (71.75%), Query Frame = 1

		  
Query: 10  SQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE---DDDLPR 69
           +QE Q +T   +   E+   E EE++      K    KK+  QV LEGYVE   +DDL R
Sbjct: 27  NQEPQFLTITRSGFDEE---ESEELL------KNENKKKKKNQVLLEGYVETDSEDDLKR 86

Query: 70  TKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQQHHLHQ 129
           TKSLTD+DLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKF+D+H +Q+    +
Sbjct: 87  TKSLTDEDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFMDEHQSQKS--PE 146

Query: 130 GGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVKLCS 184
             G+  VS+D         SSP+  WKISSPGDHPEDVKARLK+WAQ VACTV+LCS
Sbjct: 147 SHGNSPVSTDPV-------SSPIANWKISSPGDHPEDVKARLKYWAQAVACTVRLCS 185

[Close]

BLAST of Spo10238.1 vs. UniProtKB/TrEMBL
Match: V4VT44_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022453mg PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.300e-46
Identity = 108/177 (61.02%), Postives = 127/177 (71.75%), Query Frame = 1

		  
Query: 10  SQEKQLITTQTTPTSEQQRYEEEEVIVYKPKPKTRKPKKRVPQVCLEGYVE---DDDLPR 69
           +QE Q +T   +   E+   E EE++      K    KK+  QV LEGYVE   +DDL R
Sbjct: 27  NQEPQFLTITRSGFDEE---ESEELL------KNENKKKKKNQVLLEGYVETDSEDDLKR 86

Query: 70  TKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQQHHLHQ 129
           TKSLTD+DLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKF+D+H +Q+    +
Sbjct: 87  TKSLTDEDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFMDEHQSQKS--PE 146

Query: 130 GGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACTVKLCS 184
             G+  VS+D         SSP+  WKISSPGDHPEDVKARLK+WAQ VACTV+LCS
Sbjct: 147 SHGNSPVSTDPV-------SSPIANWKISSPGDHPEDVKARLKYWAQAVACTVRLCS 185

[Close]

BLAST of Spo10238.1 vs. UniProtKB/TrEMBL
Match: U5FIB1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s06130g PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 9.500e-46
Identity = 101/149 (67.79%), Postives = 111/149 (74.50%), Query Frame = 1

		  
Query: 40  KPKTRKPKKRVPQVCLEGYVE-----DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIP 99
           K   RK  ++  QV LEGYVE     +D+L RTKSLTDDDLDELKGCLDLGFGFSYDEIP
Sbjct: 66  KGSLRKILRKKSQVLLEGYVEGRSNSEDELKRTKSLTDDDLDELKGCLDLGFGFSYDEIP 125

Query: 100 ELCNTLPALELCYSMSQKFLDDHPNQQHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKI 159
           ELCNTLPALELCYSMSQKFLD+H                SS   + + + SSSP+  WKI
Sbjct: 126 ELCNTLPALELCYSMSQKFLDEHQKPPES----------SSPAEAEAEAASSSPIANWKI 185

Query: 160 SSPGDHPEDVKARLKFWAQTVACTVKLCS 184
           SSPGDHPEDVKARLKFWAQTVACTV+LCS
Sbjct: 186 SSPGDHPEDVKARLKFWAQTVACTVRLCS 204

[Close]

BLAST of Spo10238.1 vs. TAIR (Arabidopsis)
Match: AT2G31560.1 (Protein of unknown function (DUF1685))

HSP 1 Score: 181.8 bits (460), Expect = 3.800e-46
Identity = 95/142 (66.90%), Postives = 107/142 (75.35%), Query Frame = 1

		  
Query: 44  RKPKKRVPQVCLEGYVED--DDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLP 103
           +K +K+  QV LEGY  D  DDL R KSLTDDDL+ELKGCLDLGFGFSYDEIPELCNTLP
Sbjct: 70  KKLEKKKSQVLLEGYALDDQDDLTRAKSLTDDDLEELKGCLDLGFGFSYDEIPELCNTLP 129

Query: 104 ALELCYSMSQKFLDDHPNQQHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHP 163
           ALELCYSMSQKFLDD   Q HH  Q         +  S     +++P+  WKISSPGD P
Sbjct: 130 ALELCYSMSQKFLDD-KQQNHHKSQ--------EEDDSSPPPTTTAPIANWKISSPGDDP 189

Query: 164 EDVKARLKFWAQTVACTVKLCS 184
           +DVKARLK+WAQTVACTV+LCS
Sbjct: 190 DDVKARLKYWAQTVACTVRLCS 202

[Close]

BLAST of Spo10238.1 vs. TAIR (Arabidopsis)
Match: AT2G43340.1 (Protein of unknown function (DUF1685))

HSP 1 Score: 178.3 bits (451), Expect = 4.200e-45
Identity = 102/185 (55.14%), Postives = 125/185 (67.57%), Query Frame = 1

		  
Query: 7   ESDSQEKQLITTQTTPTSEQQRYEEEEVI----VYKPKPKTRKPKKRVPQVCLEGYVE-- 66
           E+D      I+T +  +      EEEE+     V + K +T+K +K+   V LEGYV   
Sbjct: 14  EADVDSDSEISTSSFSSCSYSESEEEEINNGFGVVQSKKQTKKLEKKKSNVLLEGYVVDS 73

Query: 67  --DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHP 126
             +DDL RTKSLTDDDL+ELKGC+DLGFGF+Y+EIPELCNTLPALELCYSMSQKF+D   
Sbjct: 74  AVNDDLKRTKSLTDDDLEELKGCVDLGFGFNYEEIPELCNTLPALELCYSMSQKFID--- 133

Query: 127 NQQHHLHQGGGSGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQTVACT 184
            Q HH H        S +  S       SP+ +WKISSPGD+P+DVKARLKFWAQ VACT
Sbjct: 134 -QDHHHHSSS-----SPEKKSSVLDSPVSPIASWKISSPGDNPDDVKARLKFWAQAVACT 189

[Close]

BLAST of Spo10238.1 vs. TAIR (Arabidopsis)
Match: AT1G05870.1 (Protein of unknown function (DUF1685))

HSP 1 Score: 172.9 bits (437), Expect = 1.800e-43
Identity = 92/155 (59.35%), Postives = 110/155 (70.97%), Query Frame = 1

		  
Query: 44  RKPKKRVPQVCLEGYVE----------DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEI 103
           +K +++  QV LEGYVE           DDL R+KSLTDDDL++L+GCLDLGFGFSYDEI
Sbjct: 48  KKLERKKSQVLLEGYVETASSSSVDDQKDDLTRSKSLTDDDLEDLRGCLDLGFGFSYDEI 107

Query: 104 PELCNTLPALELCYSMSQKFLDDHPNQQHHLHQGGGSGGVSSDTASFSGSES-----SSP 163
           PELCNTLPALELCYSMSQKFLDD  N+             S +T+S     S     ++P
Sbjct: 108 PELCNTLPALELCYSMSQKFLDDKQNK-------------SPETSSVEDCPSPPLVTATP 167

Query: 164 MPTWKISSPGDHPEDVKARLKFWAQTVACTVKLCS 184
           +  WKISSPGD+P+DVKARLK+WAQ VACTV+LCS
Sbjct: 168 IANWKISSPGDNPDDVKARLKYWAQAVACTVQLCS 189

[Close]

BLAST of Spo10238.1 vs. TAIR (Arabidopsis)
Match: AT3G22690.1 (Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885))

HSP 1 Score: 99.4 bits (246), Expect = 2.500e-21
Identity = 57/104 (54.81%), Postives = 63/104 (60.58%), Query Frame = 1

		  
Query: 70  LTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQQHHLHQGGG 129
           LTDDDL+ LKGCLDLGFGF+YDEIP LC TLPALELCYSMSQK LDD             
Sbjct: 843 LTDDDLEVLKGCLDLGFGFNYDEIPALCKTLPALELCYSMSQKNLDD------------- 902

Query: 130 SGGVSSDTASFSGSESSSPMPTWKISSPGDHPEDVKARLKFWAQ 174
                  T S       S +P+       D+P+DVKARLK WAQ
Sbjct: 903 -----KHTPSLQLPIGRSLVPSC------DNPDDVKARLKCWAQ 922

[Close]

BLAST of Spo10238.1 vs. TAIR (Arabidopsis)
Match: AT5G28690.1 (Protein of unknown function (DUF1685))

HSP 1 Score: 86.3 bits (212), Expect = 2.200e-17
Identity = 53/121 (43.80%), Postives = 76/121 (62.81%), Query Frame = 1

		  
Query: 61  DDDLPRTKSLTDDDLDELKGCLDLGFGFSYDEIPELCNTLPALELCYSMSQKFLDDHPNQ 120
           D+D P    LTD+DL ELKG ++LGFGFS +   +LCNTLPAL+L ++++++ L   P+ 
Sbjct: 75  DNDSP---DLTDEDLRELKGSIELGFGFSEEAGQKLCNTLPALDLYFAVNRQ-LSPLPSP 134

Query: 121 QHHLHQGGGSGGVSSDTASFSGSESS--SPMPTWKISSPGDHPEDVKARLKFWAQTVACT 180
                  GG G +SS + S S    S  +   + KI  PGD+P+ VK RL+ WAQ VAC+
Sbjct: 135 S---SSNGGDGSLSSTSVSSSSIPCSPKTDSDSLKILCPGDNPQQVKQRLRHWAQAVACS 188

The following BLAST results are available for this feature:

BLAST of Spo10238.1 vs. NCBI nr
BLAST of Spo10238.1 vs. UniProtKB/TrEMBL
BLAST of Spo10238.1 vs. ExPASy Swiss-Prot
BLAST of Spo10238.1 vs. TAIR (Arabidopsis)

BLAST of Spo10238.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902149881\|gb\|KNA05349.1\|	2.1e-99	100.	hypothetical protein SOVF_1912...	[more]
gi\|731322300\|ref\|XP_010671814.1\|	1.4e-69	74.7	PREDICTED: uncharacterized pro...	[more]
gi\|743883588\|ref\|XP_011037064.1\|	4.7e-46	68.9	PREDICTED: uncharacterized pro...	[more]
gi\|567901172\|ref\|XP_006443074.1\|	4.7e-46	61.0	hypothetical protein CICLE_v10...	[more]
gi\|566211702\|ref\|XP_006372903.1\|	1.4e-45	67.7	hypothetical protein POPTR_001...	[more]

BLAST of Spo10238.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9QDJ8_SPIOL	1.5e-99	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CRB7_BETVU	9.4e-70	74.7	Uncharacterized protein OS=Bet...	[more]
A0A067DKT5_CITSI	3.3e-46	61.0	Uncharacterized protein OS=Cit...	[more]
V4VT44_9ROSI	3.3e-46	61.0	Uncharacterized protein OS=Cit...	[more]
U5FIB1_POPTR	9.5e-46	67.7	Uncharacterized protein OS=Pop...	[more]

BLAST of Spo10238.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

BLAST of Spo10238.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
AT2G31560.1	3.8e-46	66.9	Protein of unknown function (D...	[more]
AT2G43340.1	4.2e-45	55.1	Protein of unknown function (D...	[more]
AT1G05870.1	1.8e-43	59.3	Protein of unknown function (D...	[more]
AT3G22690.1	2.5e-21	54.8	Protein of unknown function DU...	[more]
AT5G28690.1	2.2e-17	43.8	Protein of unknown function (D...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012881	Protein of unknown function DUF1685	PFAM	PF07939	DUF1685	coord: 70..122 score: 8.4
None	No IPR available	PANTHER	PTHR31865	FAMILY NOT NAMED	coord: 62..183 score: 1.1
None	No IPR available	PANTHER	PTHR31865:SF0	SUBFAMILY NOT NAMED	coord: 62..183 score: 1.1