Spo10380.1 (mRNA)

Overview
NameSpo10380.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 4547604 .. 4550255 (+)
Sequence length255
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGCATCAGATTTCCATGGTATTGATGGACGATGGTAACTGGAAAATCAATATGCCCTATGCTCTCCTCGTACTGTAATACTTTTATCCAGTCGTCAACTGACTTGAAGACACTATAAAAAGTATCATTTATCAGGTTGTAAGTTAGAGCTAGGAAACTTGAGATATGGAATTTGGAGGGTAAAGGAAGCAAATTGGAAGTTCATTTTCCTTCCCATTTTAAGAAGCCAAATTGGAATGATTCTTTTTCTATTAGGTAGTTGGAACTCGGAAGGATATTTAGGAAGGATTTTGGAAGTAAAATGCAAGCTCACTCTTCCCCTTTTTCCCCTTCCTTTCCTCCCTCCTGTGTATGATTTATGTCCAAACACACTCTTAACTCTAATTAAAAACCCCTAAATTCAGTTAATGACTACCAAGTTCAATTCACAACTAAAAGTAAGTATAGATGAGATCCAATAAGTTCAGATAAGGGCCAATAAGTTTAGAAACTGCAAATAAAGGATAACAAGTGTAGATTAGGAATTTTGGGTGAAGAAAGAAGCCTTAATCATGATACTCTTTACTTCTATATTTTATTCTTTAGGTTTATAGAATTAATATCGTAACTTCATTTTGTGGTTGTTGGATTGTTTCCGTGCTTCTTGTGTGATGCTTGCATCATTTAAGTGTAGTGGTTTATTTTCCCCTTTTTGTTGGATATTGGGTAGAAGACCGGTGACTTGTATTGAAGCAAGGGCTGGTTTGCAACACTTTTGTGAATATACTGACATGTAATATTACCTTTCAGTAAATTCAATTCAGAAGCCATTTCTTCTAGGCATGTAGCTTCTGCCCTTGGATTAATGTCTATGGTAAACTTTCACCGTATTGGATTTTAGAGCTTCCAGTCCATATGACACATTACGATTATACAAGTTATGTGACTTGTTCTGCAATTATCTAAATATGGTGGGCCAAAAATTTGACATTATTTGACATTGATGGGCCAAAAATCCTTGAGTGCTTGTCATTATTCGATGAGTACAGGGAAACCTAAAATAATCTGGATCTCTACCGTATGTGTCCTTAGTAAAGCCCAATTTAAACATTCACTTTATATTCTATATACTATTGGTTAATTACGGCATTCTATTCCGTGTTATGACTGAGTAGTGTTATCCTGTTGAGTATTTGTATAGCTGTATGTCAGTAGTCAACTGCCAGGATTTGGTGGTTTCGTGGATGTCAGTATGCATTTGAGGCCACAAACTTTGACTTGAGGGCTTTGACATTTCGTGTCTCAACCTCTATTGTTGACTGGGGGCTACTGTGAAGTGTGAACTACTATGTGAGTAGGTGTTGCTTCTTATGTTCACAGGGATGCATTAATCCCTTTTATAAGTTTTGACATTTTGTTTCCACATATTTAAATACTACCCGGTTAACCTTGTATGTGATTTCTGATACTTCAAGAACTTTTTCAGCTGAATGGACCTATGGAATTCATGGGATTGATATTTTTCTCCCTGTTAATACTTATAGGAAAAAGAGAGTTAAGGGGAGGGAGAGACACTATATAAGATATATGATAGAGCAGCAGCTTGCTGATGGACTTAACATATCGAATTCCTATAGGAGTTAAGAGTTACGAGTTAAGGCTGCCAGGTCTGCTGATAACTTGGATATGCGAAGAGCAGCTTATTATCACTAACTTGTCTATTCTCATTGCAATCATCATTGTGATCCCATTTACAGATATGGCATATTTACCCTGTCTAAAACACAGTGTTCCATTTACAATGGTTTGTCGTTTTGAGCCCCTGCGGCACTGCACATTCTTCTTTTTTCTACATCAACAGTGATGCAAATTTTGGTTCTCCCAAGTTTTTAGGTTCATTAACAAATGCTCTGCACTGTGATAAACTGGTGAGCTCATTTTGTGTTATGCTCTTTCAGTCAGTAACCTTCTCACTTAGATCATCAGGTGCACTCCAAATCCTCCATCAATTACACTATGCAGATCCTTTTTACATAATTTGAATAAGTCACATCATATCGTTGAGTTCAAACTTTAATGTGTGAGTCTTCATATTCATGTATGTGTGATGTTATTTCACTTACCGTGTTGAAGATATCTTGTTATGCAGGTAAGGAACAGAAAGGCAAGGGTCTCTGAGGCATTGGTGAGTCCATCTTCTTACAGTATATGCAGTCGTCAAATATTTCATTTCTAGGTACCAACTCCTTCAATACCAACTGTATGGATGTGTGATTAGTAATTTTTGTTTATTCCAAATCCAAATCGTATATTAGACCAGTGCTTGTAAATGATGAGAGTGTTTTATGTAGATGAATTTATGTATATAGAATGGAATACTTGTGAATTTTAATTTCTGTGGCATTCAGTTTTCACCAATGGGATTAAATTGCTGCAATACAGGTTATAACAACAAAAGGTAAATATAACTTTCACTAGCTCACGAATTGTCGGCATGCATTCAGAGAAGATGGGCAAATTTTCTGGATAAATGTTATTTCTCGCGTTACCCCATCCACACTTCCACAGTGCCCGAAGAGGTGAAAGAAGGCCGAATGGCTGCCCATGATTCACCGCGCCATGCCATAGAGGTGAAACCATGGCATAAAACTGCTGCAATGATGGATTAA

mRNA sequence

ATGCCTGCATCAGATTTCCATGGTATTGATGGACGATGTAAATTCAATTCAGAAGCCATTTCTTCTAGGCATGTAGCTTCTGCCCTTGGATTAATGTCTATGGTAAGGAACAGAAAGGCAAGGGTCTCTGAGGCATTGGTTATAACAACAAAAGTGCCCGAAGAGGTGAAAGAAGGCCGAATGGCTGCCCATGATTCACCGCGCCATGCCATAGAGGTGAAACCATGGCATAAAACTGCTGCAATGATGGATTAA

Coding sequence (CDS)

ATGCCTGCATCAGATTTCCATGGTATTGATGGACGATGTAAATTCAATTCAGAAGCCATTTCTTCTAGGCATGTAGCTTCTGCCCTTGGATTAATGTCTATGGTAAGGAACAGAAAGGCAAGGGTCTCTGAGGCATTGGTTATAACAACAAAAGTGCCCGAAGAGGTGAAAGAAGGCCGAATGGCTGCCCATGATTCACCGCGCCATGCCATAGAGGTGAAACCATGGCATAAAACTGCTGCAATGATGGATTAA

Protein sequence

MPASDFHGIDGRCKFNSEAISSRHVASALGLMSMVRNRKARVSEALVITTKVPEEVKEGRMAAHDSPRHAIEVKPWHKTAAMMD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo10380Spo10380gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo10380.1Spo10380.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10380.1.exon.1Spo10380.1.exon.1exon
Spo10380.1.exon.2Spo10380.1.exon.2exon
Spo10380.1.exon.3Spo10380.1.exon.3exon
Spo10380.1.exon.4Spo10380.1.exon.4exon
Spo10380.1.exon.5Spo10380.1.exon.5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10380.1.CDS.1Spo10380.1.CDS.1CDS
Spo10380.1.CDS.2Spo10380.1.CDS.2CDS
Spo10380.1.CDS.3Spo10380.1.CDS.3CDS
Spo10380.1.CDS.4Spo10380.1.CDS.4CDS
Spo10380.1.CDS.5Spo10380.1.CDS.5CDS


Homology
The following BLAST results are available for this feature:
BLAST of Spo10380.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo10380.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo10380.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo10380.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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