Spo10549.1 (mRNA)

Overview
NameSpo10549.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionArginine/serine-rich splicing factor, putative
Locationchr4 : 60960127 .. 60962134 (+)
Sequence length1274
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAACCGTTTCTCTCGTACCATCTATGTTGGTAACCTACCTTCGGATATCAAAGAACGTGACATTGAAGATCTGTTTTACAAGGTTTGAGTTTTGAACTTCTGTTCCTATGCCCCTAATGGATAAATATATCCCCTCATTTTTCCCTTGGCCTTGATATATTCCTATGCTGTTGTGGAGTAGACATTTGTTAATTTATTTTGTTGATCATGTTGGTTTATCTGTTTCTTCAAATGTCCCCGTTTTTATTTAAAAAAAATTGCACTTGTCTCTGCATTGTACATGCATGTTGATATTTGGTGCAGTATGACACATGCTTGTCTTCTTTGGTGCAGTATGGTCGTATTTTGGAAGTTGAAACTAAAGTTCCACCTCGACCTCCTTGTTTTTGCTTCGTGGAGGTAACCCTTGGCACTTATTTTTGGTTTGATCCAACTGTTTAGGTTGATGCTTGAGAATTAACAGCTATGTTGATACTTGGTCTTGAGAATTAACAGTTATGTGCTTTAAATTGATAGTTTGAGGGTCCCCGAGATGCTGATCAGGCAATAAGGGGACGTGATGGCTACAACTTTGATGGTTGTCACCTAAGGGTAATAATATCGTCGTTTACTTTCATTTCATTAGTTACACATTCGATTCCTTACTTTTATGTTTCACAAATATAGGTTGAACTTGCACATGGTGGACGGGGATCAGGATCATCAAGCAGCTTGTATATTCTTCAGTTGGATGACAATTCCAATTGCTCATCATTCTATTTGTTGTAAGTACTCTTGTACCAACTATTTTCTATTCTTTTCTTAGTTTTTTGTGTCATTGCCGAGTTCTTACAGAAACCATTTTTTAATGTAATCATTGCGCCCTTTGAATTGATGTACAACTATACAATCCATATACGGAGTAAGAATTTATCACTTGTACTAATACATATTACAATAGTATAGGACAATGGGTCATTTGTAAAGAATTTAAGTAGAATTGTTTTGGAGTACAGATCACCCCCCAGCTGCACTGAAGGTATATCTTTATTTAATATCCTTCGTTAAGATATCCCTGCTTGATATTCAACGCTTTAGAGTTGAGATGCTAAACAGCTAAAGTAACAAGATGGTTGTAGGTATGCATTTTATCACTCTCTACTATTTTGGCTTATGATCTCATATAACTAAAATGAATCCATTCACCATTGCAAACTCCTGTTTACACAATCGCTTCAAATGTCGGTGTTGAGGGAGCTCTTATTGTTGGAAAGCTATTAGAGGAGGATAACCAATATATTGTTTACGATCCTGCTAAAGGTATCAAACAGCTTACATGCTCCTTTTGTTTATGAATGAGCAACTGCTGGGTGGGTATAATGTCTTATGTTAATTGAGCAGGCGAATATGTAGACATGGTCAAATCAGGAATCATCGATCATTGAAGGTTATTAGGACAACTTGTCTGATTTTTCTAGGTACGTTTTTATTTGTTAAGAGTTTTCATATACGTAGTCTAGGTCATTAATGCAAATTTTTGAGAGATTTTTTTATTATTTGTTCTGATGATGCAGTGTGTCATCTTTGATGACTACGTCGGATGTTGTAATTGTCGAGGCACCCAAAGATGAGAAGGATGTGGCTCCTGCAATTGGTGGGGTGGGCGGTATTACTTACTGAGTGGTTGACTAAATACGCAAAGGAAACATTTTCTTCACTTTTGCTGGATTTTGTTAATGCCCTTGTTATGCTAGGAAGGAAATTGTATAAAACATAGTGGGAGAAAATAGTTTGTAGGTTTCCTGCGAATGCAACCAATATTTTTTATTGGGATTGTGATTGTATCTCCATTAATTATGGAAGATTTGGCCAAATTCGATGTTGTATTTATCATAGAAATATGCAACAAGTTTTTTATCATATTATTTATGTAGAGGTGTTTTACATATAAATATATAGCAGGCAGTAGCTATAGAAATGTACAACTTATTTTTTTAATAAACAAAGATGGAAAAGTTACAAAA

mRNA sequence

ATGAGTAACCGTTTCTCTCGTACCATCTATGTTGGTAACCTACCTTCGGATATCAAAGAACGTGACATTGAAGATCTGTTTTACAAGTATGGTCGTATTTTGGAAGTTGAAACTAAAGTTCCACCTCGACCTCCTTGTTTTTGCTTCGTGGAGTTTGAGGGTCCCCGAGATGCTGATCAGGCAATAAGGGGACGTGATGGCTACAACTTTGATGGTTGTCACCTAAGGGTTGAACTTGCACATGGTGGACGGGGATCAGGATCATCAAGCAGCTTGTATATTCTTCAGTTGGATGACAATTCCAATTGCTCATCATTCTATTTGTTGTAAGTACTCTTGTACCAACTATTTTCTATTCTTTTCTTAGTTTTTTGTGTCATTGCCGAGTTCTTACAGAAACCATTTTTTAATGTAATCATTGCGCCCTTTGAATTGATGTACAACTATACAATCCATATACGGAGTAAGAATTTATCACTTGTACTAATACATATTACAATAGTATAGGACAATGGGTCATTTGTAAAGAATTTAAGTAGAATTGTTTTGGAGTACAGATCACCCCCCAGCTGCACTGAAGGTATATCTTTATTTAATATCCTTCGTTAAGATATCCCTGCTTGATATTCAACGCTTTAGAGTTGAGATGCTAAACAGCTAAAGTAACAAGATGGTTGTAGGGAGCTCTTATTGTTGGAAAGCTATTAGAGGAGGATAACCAATATATTGTTTACGATCCTGCTAAAGGCGAATATGTAGACATGGTCAAATCAGGAATCATCGATCATTGAAGGTTATTAGGACAACTTGTCTGATTTTTCTAGTGTGTCATCTTTGATGACTACGTCGGATGTTGTAATTGTCGAGGCACCCAAAGATGAGAAGGATGTGGCTCCTGCAATTGGTGGGGTGGGCGGTATTACTTACTGAGTGGTTGACTAAATACGCAAAGGAAACATTTTCTTCACTTTTGCTGGATTTTGTTAATGCCCTTGTTATGCTAGGAAGGAAATTGTATAAAACATAGTGGGAGAAAATAGTTTGTAGGTTTCCTGCGAATGCAACCAATATTTTTTATTGGGATTGTGATTGTATCTCCATTAATTATGGAAGATTTGGCCAAATTCGATGTTGTATTTATCATAGAAATATGCAACAAGTTTTTTATCATATTATTTATGTAGAGGTGTTTTACATATAAATATATAGCAGGCAGTAGCTATAGAAATGTACAACTTATTTTTTTAATAAACAAAGATGGAAAAGTTACAAAA

Coding sequence (CDS)

ATGAGTAACCGTTTCTCTCGTACCATCTATGTTGGTAACCTACCTTCGGATATCAAAGAACGTGACATTGAAGATCTGTTTTACAAGTATGGTCGTATTTTGGAAGTTGAAACTAAAGTTCCACCTCGACCTCCTTGTTTTTGCTTCGTGGAGTTTGAGGGTCCCCGAGATGCTGATCAGGCAATAAGGGGACGTGATGGCTACAACTTTGATGGTTGTCACCTAAGGGTTGAACTTGCACATGGTGGACGGGGATCAGGATCATCAAGCAGCTTGTATATTCTTCAGTTGGATGACAATTCCAATTGCTCATCATTCTATTTGTTGTAA

Protein sequence

MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQAIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLYILQLDDNSNCSSFYLL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo10549Spo10549gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo10549.1Spo10549.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10549.1.exon.1Spo10549.1.exon.1exon
Spo10549.1.exon.2Spo10549.1.exon.2exon
Spo10549.1.exon.3Spo10549.1.exon.3exon
Spo10549.1.exon.4Spo10549.1.exon.4exon
Spo10549.1.exon.5Spo10549.1.exon.5exon
Spo10549.1.exon.6Spo10549.1.exon.6exon
Spo10549.1.exon.7Spo10549.1.exon.7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10549.1.CDS.1Spo10549.1.CDS.1CDS
Spo10549.1.CDS.2Spo10549.1.CDS.2CDS
Spo10549.1.CDS.3Spo10549.1.CDS.3CDS
Spo10549.1.CDS.4Spo10549.1.CDS.4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo10549.1.utr3p.1Spo10549.1.utr3p.1three_prime_UTR
Spo10549.1.utr3p.2Spo10549.1.utr3p.2three_prime_UTR
Spo10549.1.utr3p.3Spo10549.1.utr3p.3three_prime_UTR
Spo10549.1.utr3p.4Spo10549.1.utr3p.4three_prime_UTR


Homology
[Close]
BLAST of Spo10549.1 vs. NCBI nr
Match: gi|902100600|gb|KNA03504.1| (hypothetical protein SOVF_208560 [Spinacia oleracea])

HSP 1 Score: 215.3 bits (547), Expect = 5.200e-53
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

		  

Query: 1   MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
           MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ
Sbjct: 1   MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60

Query: 61  AIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLYILQLDDNS 102
           AIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLYILQLDDNS
Sbjct: 61  AIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLYILQLDDNS 101
[Close]
BLAST of Spo10549.1 vs. NCBI nr
Match: gi|902099826|gb|KNA03491.1| (hypothetical protein SOVF_208700 [Spinacia oleracea])

HSP 1 Score: 182.2 bits (461), Expect = 4.900e-43
Identity = 84/90 (93.33%), Postives = 87/90 (96.67%), Query Frame = 1 

		  

Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MSNRFSRTIYVGNLPSDIKER+IEDLFYKYGRILEVE KVPPRPPCFCFVEFEG RDAD+
Sbjct: 1  MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSS 91
          AIRGRDGYNFDGC LRVELAHGGRGSGSS+
Sbjct: 61 AIRGRDGYNFDGCRLRVELAHGGRGSGSSA 90
[Close]
BLAST of Spo10549.1 vs. NCBI nr
Match: gi|1021040295|gb|KZM98076.1| (hypothetical protein DCAR_014562 [Daucus carota subsp. sativus])

HSP 1 Score: 166.4 bits (420), Expect = 2.800e-38
Identity = 75/89 (84.27%), Postives = 80/89 (89.89%), Query Frame = 1 

		  

Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS RFSRTIYVGNLP DIKER++EDLFYKYGRI+++E KVPPRPPCFCFVEFE  RDAD 
Sbjct: 1  MSGRFSRTIYVGNLPLDIKEREVEDLFYKYGRIVDIELKVPPRPPCFCFVEFERSRDADD 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSS 90
          AIRGRDGYNFDGC LRVELAHGGRG  SS
Sbjct: 61 AIRGRDGYNFDGCRLRVELAHGGRGQSSS 89
[Close]
BLAST of Spo10549.1 vs. NCBI nr
Match: gi|147788227|emb|CAN71592.1| (hypothetical protein VITISV_015931 [Vitis vinifera])

HSP 1 Score: 166.0 bits (419), Expect = 3.700e-38
Identity = 75/90 (83.33%), Postives = 81/90 (90.00%), Query Frame = 1 

		  

Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS RFSRTIYVGNLPSDI+E +IEDLFYKYGRIL+VE K+PPRPPC+CFVEFE  RDA+ 
Sbjct: 1  MSGRFSRTIYVGNLPSDIREYEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENSRDAED 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSS 91
          AIRGRDGYNFDGC LRVELAHGGRG  SSS
Sbjct: 61 AIRGRDGYNFDGCRLRVELAHGGRGQSSSS 90
[Close]
BLAST of Spo10549.1 vs. NCBI nr
Match: gi|302143975|emb|CBI23080.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 166.0 bits (419), Expect = 3.700e-38
Identity = 75/90 (83.33%), Postives = 81/90 (90.00%), Query Frame = 1 

		  

Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS RFSRTIYVGNLPSDI+E +IEDLFYKYGRIL+VE K+PPRPPC+CFVEFE  RDA+ 
Sbjct: 1  MSGRFSRTIYVGNLPSDIREYEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENSRDAED 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSS 91
          AIRGRDGYNFDGC LRVELAHGGRG  SSS
Sbjct: 61 AIRGRDGYNFDGCRLRVELAHGGRGQSSSS 90
[Close]
BLAST of Spo10549.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q8C9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_208560 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 3.700e-53
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1 

		  

Query: 1   MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
           MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ
Sbjct: 1   MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60

Query: 61  AIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLYILQLDDNS 102
           AIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLYILQLDDNS
Sbjct: 61  AIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLYILQLDDNS 101
[Close]
BLAST of Spo10549.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QAD1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_208700 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.400e-43
Identity = 84/90 (93.33%), Postives = 87/90 (96.67%), Query Frame = 1 

		  

Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MSNRFSRTIYVGNLPSDIKER+IEDLFYKYGRILEVE KVPPRPPCFCFVEFEG RDAD+
Sbjct: 1  MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSS 91
          AIRGRDGYNFDGC LRVELAHGGRGSGSS+
Sbjct: 61 AIRGRDGYNFDGCRLRVELAHGGRGSGSSA 90
[Close]
BLAST of Spo10549.1 vs. UniProtKB/TrEMBL
Match: A0A165XE64_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014562 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.900e-38
Identity = 75/89 (84.27%), Postives = 80/89 (89.89%), Query Frame = 1 

		  

Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS RFSRTIYVGNLP DIKER++EDLFYKYGRI+++E KVPPRPPCFCFVEFE  RDAD 
Sbjct: 1  MSGRFSRTIYVGNLPLDIKEREVEDLFYKYGRIVDIELKVPPRPPCFCFVEFERSRDADD 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSS 90
          AIRGRDGYNFDGC LRVELAHGGRG  SS
Sbjct: 61 AIRGRDGYNFDGCRLRVELAHGGRGQSSS 89
[Close]
BLAST of Spo10549.1 vs. UniProtKB/TrEMBL
Match: A5ARR5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015931 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.500e-38
Identity = 75/90 (83.33%), Postives = 81/90 (90.00%), Query Frame = 1 

		  

Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS RFSRTIYVGNLPSDI+E +IEDLFYKYGRIL+VE K+PPRPPC+CFVEFE  RDA+ 
Sbjct: 1  MSGRFSRTIYVGNLPSDIREYEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENSRDAED 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSS 91
          AIRGRDGYNFDGC LRVELAHGGRG  SSS
Sbjct: 61 AIRGRDGYNFDGCRLRVELAHGGRGQSSSS 90
[Close]
BLAST of Spo10549.1 vs. UniProtKB/TrEMBL
Match: E0CVB9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g01020 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.500e-38
Identity = 75/90 (83.33%), Postives = 81/90 (90.00%), Query Frame = 1 

		  

Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS RFSRTIYVGNLPSDI+E +IEDLFYKYGRIL+VE K+PPRPPC+CFVEFE  RDA+ 
Sbjct: 1  MSGRFSRTIYVGNLPSDIREYEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENSRDAED 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSS 91
          AIRGRDGYNFDGC LRVELAHGGRG  SSS
Sbjct: 61 AIRGRDGYNFDGCRLRVELAHGGRGQSSSS 90
[Close]
BLAST of Spo10549.1 vs. ExPASy Swiss-Prot
Match: SR34A_ARATH (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana GN=SR34A PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.400e-37
Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = 1 

		  

Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS RFSR+IYVGNLP DI+E +IED+FYKYGRI+++E KVPPRPPC+CFVEFE  RDA+ 
Sbjct: 1  MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSS 90
          AI+GRDGYN DGC LRVELAHGGRG  SS
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSSS 89
[Close]
BLAST of Spo10549.1 vs. ExPASy Swiss-Prot
Match: SR30_ARATH (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana GN=SR30 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.900e-32
Identity = 61/93 (65.59%), Postives = 76/93 (81.72%), Query Frame = 1 

		  

Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS+R++RTIYVGNLP DI++ ++EDLFYKYG I++++ K+PPRPP + FVEFE PRDAD 
Sbjct: 1  MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLY 94
          AI GRDGY+FDGC LRVE+AHGGR    S   Y
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRY 93
[Close]
BLAST of Spo10549.1 vs. ExPASy Swiss-Prot
Match: SR34B_ARATH (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana GN=SR34B PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.900e-31
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 1 

		  

Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS+R SRTIYVGNLP DI+ER++EDLF KYG +++++ K+PPRPP + FVEFE  RDAD 
Sbjct: 1  MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGS 87
          AI GRDGY+FDG HLRVELAHGGR S
Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGRRS 86
[Close]
BLAST of Spo10549.1 vs. ExPASy Swiss-Prot
Match: SR34_ARATH (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana GN=SR34 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.100e-30
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 1 

		  

Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS+R SRT+YVGNLP DI+ER++EDLF KYG +++++ KVPPRPP + FVEF+  RDA+ 
Sbjct: 1  MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSS 91
          AI GRDGY+FDG  LRVELAHGGR S   +
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDT 90
[Close]
BLAST of Spo10549.1 vs. ExPASy Swiss-Prot
Match: SRSF1_XENTR (Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis GN=srsf1 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.400e-21
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 1 

		  

Query: 9  IYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQAIRGRDGY 68
          IYVGNLP DI+ +DIED+FYKYG I +++ K     P F FVEFE PRDA+ A+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77

Query: 69 NFDGCHLRVELAHGGRGSG 88
          ++DG  LRVE    GRG+G
Sbjct: 78 DYDGYRLRVEFPRSGRGAG 96
[Close]
BLAST of Spo10549.1 vs. TAIR (Arabidopsis)
Match: AT3G49430.1 (SER/ARG-rich protein 34A)

HSP 1 Score: 156.0 bits (393), Expect = 1.300e-38
Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = 1 

		  

Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS RFSR+IYVGNLP DI+E +IED+FYKYGRI+++E KVPPRPPC+CFVEFE  RDA+ 
Sbjct: 1  MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSS 90
          AI+GRDGYN DGC LRVELAHGGRG  SS
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSSS 89
[Close]
BLAST of Spo10549.1 vs. TAIR (Arabidopsis)
Match: AT1G09140.1 (SERINE-ARGININE PROTEIN 30)

HSP 1 Score: 138.7 bits (348), Expect = 2.200e-33
Identity = 61/93 (65.59%), Postives = 76/93 (81.72%), Query Frame = 1 

		  

Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS+R++RTIYVGNLP DI++ ++EDLFYKYG I++++ K+PPRPP + FVEFE PRDAD 
Sbjct: 1  MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLY 94
          AI GRDGY+FDGC LRVE+AHGGR    S   Y
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRY 93
[Close]
BLAST of Spo10549.1 vs. TAIR (Arabidopsis)
Match: AT4G02430.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 136.3 bits (342), Expect = 1.100e-32
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 1 

		  

Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS+R SRTIYVGNLP DI+ER++EDLF KYG +++++ K+PPRPP + FVEFE  RDAD 
Sbjct: 1  MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGS 87
          AI GRDGY+FDG HLRVELAHGGR S
Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGRRS 86
[Close]
BLAST of Spo10549.1 vs. TAIR (Arabidopsis)
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 131.0 bits (328), Expect = 4.600e-31
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 1 

		  

Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS+R SRT+YVGNLP DI+ER++EDLF KYG +++++ KVPPRPP + FVEF+  RDA+ 
Sbjct: 1  MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSS 91
          AI GRDGY+FDG  LRVELAHGGR S   +
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDT 90
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BLAST of Spo10549.1 vs. TAIR (Arabidopsis)
Match: AT2G37340.1 (arginine/serine-rich zinc knuckle-containing protein 33)

HSP 1 Score: 67.0 bits (162), Expect = 8.100e-12
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 1 

		  

Query: 3  NRFSRT-IYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQA 62
          +R+  T +YVG L S  + RD+E LF +YGR+ +V+ K       + FVEF  PRDAD A
Sbjct: 6  DRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD-----YAFVEFGDPRDADDA 65

Query: 63 IRGRDGYNFDGCHLRVELAHGG-RGS 87
              DG +FDG  + VE + G  RGS
Sbjct: 66 RHYLDGRDFDGSRITVEFSRGAPRGS 86
The following BLAST results are available for this feature:
BLAST of Spo10549.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902100600|gb|KNA03504.1|5.2e-53100.hypothetical protein SOVF_2085... [more]
gi|902099826|gb|KNA03491.1|4.9e-4393.3hypothetical protein SOVF_2087... [more]
gi|1021040295|gb|KZM98076.1|2.8e-3884.2hypothetical protein DCAR_0145... [more]
gi|147788227|emb|CAN71592.1|3.7e-3883.3hypothetical protein VITISV_01... [more]
gi|302143975|emb|CBI23080.3|3.7e-3883.3unnamed protein product [Vitis... [more]
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BLAST of Spo10549.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9Q8C9_SPIOL3.7e-53100.Uncharacterized protein OS=Spi... [more]
A0A0K9QAD1_SPIOL3.4e-4393.3Uncharacterized protein OS=Spi... [more]
A0A165XE64_DAUCA1.9e-3884.2Uncharacterized protein OS=Dau... [more]
A5ARR5_VITVI2.5e-3883.3Putative uncharacterized prote... [more]
E0CVB9_VITVI2.5e-3883.3Putative uncharacterized prote... [more]
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BLAST of Spo10549.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SR34A_ARATH2.4e-3776.4Serine/arginine-rich splicing ... [more]
SR30_ARATH3.9e-3265.5Serine/arginine-rich splicing ... [more]
SR34B_ARATH1.9e-3170.9Serine/arginine-rich splicing ... [more]
SR34_ARATH8.1e-3064.4Serine/arginine-rich-splicing ... [more]
SRSF1_XENTR1.4e-2159.4Serine/arginine-rich splicing ... [more]
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BLAST of Spo10549.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT3G49430.11.3e-3876.4SER/ARG-rich protein 34A[more]
AT1G09140.12.2e-3365.5SERINE-ARGININE PROTEIN 30[more]
AT4G02430.21.1e-3270.9RNA-binding (RRM/RBD/RNP motif... [more]
AT1G02840.14.6e-3164.4RNA-binding (RRM/RBD/RNP motif... [more]
AT2G37340.18.1e-1244.1arginine/serine-rich zinc knuc... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..75
score: 1.0
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..78
score: 2.5
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 7..82
score: 16
IPR012677Nucleotide-binding alpha-beta plait domainGENE3D3.30.70.330coord: 2..88
score: 7.2
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 6..87
score: 1.21
NoneNo IPR availablePANTHERPTHR24012FAMILY NOT NAMEDcoord: 6..80
score: 1.0

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008380 RNA splicing
cellular_component GO:0005829 cytosol
cellular_component GO:0005730 nucleolus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding