Spo10549.1 (mRNA) | SpinachBase

Overview


Name	Spo10549.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Arginine/serine-rich splicing factor, putative
Location	chr4 : 60960127 .. 60962134 (+)
Sequence length	1274

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAACCGTTTCTCTCGTACCATCTATGTTGGTAACCTACCTTCGGATATCAAAGAACGTGACATTGAAGATCTGTTTTACAAGGTTTGAGTTTTGAACTTCTGTTCCTATGCCCCTAATGGATAAATATATCCCCTCATTTTTCCCTTGGCCTTGATATATTCCTATGCTGTTGTGGAGTAGACATTTGTTAATTTATTTTGTTGATCATGTTGGTTTATCTGTTTCTTCAAATGTCCCCGTTTTTATTTAAAAAAAATTGCACTTGTCTCTGCATTGTACATGCATGTTGATATTTGGTGCAGTATGACACATGCTTGTCTTCTTTGGTGCAGTATGGTCGTATTTTGGAAGTTGAAACTAAAGTTCCACCTCGACCTCCTTGTTTTTGCTTCGTGGAGGTAACCCTTGGCACTTATTTTTGGTTTGATCCAACTGTTTAGGTTGATGCTTGAGAATTAACAGCTATGTTGATACTTGGTCTTGAGAATTAACAGTTATGTGCTTTAAATTGATAGTTTGAGGGTCCCCGAGATGCTGATCAGGCAATAAGGGGACGTGATGGCTACAACTTTGATGGTTGTCACCTAAGGGTAATAATATCGTCGTTTACTTTCATTTCATTAGTTACACATTCGATTCCTTACTTTTATGTTTCACAAATATAGGTTGAACTTGCACATGGTGGACGGGGATCAGGATCATCAAGCAGCTTGTATATTCTTCAGTTGGATGACAATTCCAATTGCTCATCATTCTATTTGTTGTAAGTACTCTTGTACCAACTATTTTCTATTCTTTTCTTAGTTTTTTGTGTCATTGCCGAGTTCTTACAGAAACCATTTTTTAATGTAATCATTGCGCCCTTTGAATTGATGTACAACTATACAATCCATATACGGAGTAAGAATTTATCACTTGTACTAATACATATTACAATAGTATAGGACAATGGGTCATTTGTAAAGAATTTAAGTAGAATTGTTTTGGAGTACAGATCACCCCCCAGCTGCACTGAAGGTATATCTTTATTTAATATCCTTCGTTAAGATATCCCTGCTTGATATTCAACGCTTTAGAGTTGAGATGCTAAACAGCTAAAGTAACAAGATGGTTGTAGGTATGCATTTTATCACTCTCTACTATTTTGGCTTATGATCTCATATAACTAAAATGAATCCATTCACCATTGCAAACTCCTGTTTACACAATCGCTTCAAATGTCGGTGTTGAGGGAGCTCTTATTGTTGGAAAGCTATTAGAGGAGGATAACCAATATATTGTTTACGATCCTGCTAAAGGTATCAAACAGCTTACATGCTCCTTTTGTTTATGAATGAGCAACTGCTGGGTGGGTATAATGTCTTATGTTAATTGAGCAGGCGAATATGTAGACATGGTCAAATCAGGAATCATCGATCATTGAAGGTTATTAGGACAACTTGTCTGATTTTTCTAGGTACGTTTTTATTTGTTAAGAGTTTTCATATACGTAGTCTAGGTCATTAATGCAAATTTTTGAGAGATTTTTTTATTATTTGTTCTGATGATGCAGTGTGTCATCTTTGATGACTACGTCGGATGTTGTAATTGTCGAGGCACCCAAAGATGAGAAGGATGTGGCTCCTGCAATTGGTGGGGTGGGCGGTATTACTTACTGAGTGGTTGACTAAATACGCAAAGGAAACATTTTCTTCACTTTTGCTGGATTTTGTTAATGCCCTTGTTATGCTAGGAAGGAAATTGTATAAAACATAGTGGGAGAAAATAGTTTGTAGGTTTCCTGCGAATGCAACCAATATTTTTTATTGGGATTGTGATTGTATCTCCATTAATTATGGAAGATTTGGCCAAATTCGATGTTGTATTTATCATAGAAATATGCAACAAGTTTTTTATCATATTATTTATGTAGAGGTGTTTTACATATAAATATATAGCAGGCAGTAGCTATAGAAATGTACAACTTATTTTTTTAATAAACAAAGATGGAAAAGTTACAAAA

mRNA sequence

ATGAGTAACCGTTTCTCTCGTACCATCTATGTTGGTAACCTACCTTCGGATATCAAAGAACGTGACATTGAAGATCTGTTTTACAAGTATGGTCGTATTTTGGAAGTTGAAACTAAAGTTCCACCTCGACCTCCTTGTTTTTGCTTCGTGGAGTTTGAGGGTCCCCGAGATGCTGATCAGGCAATAAGGGGACGTGATGGCTACAACTTTGATGGTTGTCACCTAAGGGTTGAACTTGCACATGGTGGACGGGGATCAGGATCATCAAGCAGCTTGTATATTCTTCAGTTGGATGACAATTCCAATTGCTCATCATTCTATTTGTTGTAAGTACTCTTGTACCAACTATTTTCTATTCTTTTCTTAGTTTTTTGTGTCATTGCCGAGTTCTTACAGAAACCATTTTTTAATGTAATCATTGCGCCCTTTGAATTGATGTACAACTATACAATCCATATACGGAGTAAGAATTTATCACTTGTACTAATACATATTACAATAGTATAGGACAATGGGTCATTTGTAAAGAATTTAAGTAGAATTGTTTTGGAGTACAGATCACCCCCCAGCTGCACTGAAGGTATATCTTTATTTAATATCCTTCGTTAAGATATCCCTGCTTGATATTCAACGCTTTAGAGTTGAGATGCTAAACAGCTAAAGTAACAAGATGGTTGTAGGGAGCTCTTATTGTTGGAAAGCTATTAGAGGAGGATAACCAATATATTGTTTACGATCCTGCTAAAGGCGAATATGTAGACATGGTCAAATCAGGAATCATCGATCATTGAAGGTTATTAGGACAACTTGTCTGATTTTTCTAGTGTGTCATCTTTGATGACTACGTCGGATGTTGTAATTGTCGAGGCACCCAAAGATGAGAAGGATGTGGCTCCTGCAATTGGTGGGGTGGGCGGTATTACTTACTGAGTGGTTGACTAAATACGCAAAGGAAACATTTTCTTCACTTTTGCTGGATTTTGTTAATGCCCTTGTTATGCTAGGAAGGAAATTGTATAAAACATAGTGGGAGAAAATAGTTTGTAGGTTTCCTGCGAATGCAACCAATATTTTTTATTGGGATTGTGATTGTATCTCCATTAATTATGGAAGATTTGGCCAAATTCGATGTTGTATTTATCATAGAAATATGCAACAAGTTTTTTATCATATTATTTATGTAGAGGTGTTTTACATATAAATATATAGCAGGCAGTAGCTATAGAAATGTACAACTTATTTTTTTAATAAACAAAGATGGAAAAGTTACAAAA

Coding sequence (CDS)

ATGAGTAACCGTTTCTCTCGTACCATCTATGTTGGTAACCTACCTTCGGATATCAAAGAACGTGACATTGAAGATCTGTTTTACAAGTATGGTCGTATTTTGGAAGTTGAAACTAAAGTTCCACCTCGACCTCCTTGTTTTTGCTTCGTGGAGTTTGAGGGTCCCCGAGATGCTGATCAGGCAATAAGGGGACGTGATGGCTACAACTTTGATGGTTGTCACCTAAGGGTTGAACTTGCACATGGTGGACGGGGATCAGGATCATCAAGCAGCTTGTATATTCTTCAGTTGGATGACAATTCCAATTGCTCATCATTCTATTTGTTGTAA

Protein sequence

MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQAIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLYILQLDDNSNCSSFYLL

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo10549	Spo10549	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo10549.1	Spo10549.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10549.1.exon.1	Spo10549.1.exon.1	exon
Spo10549.1.exon.2	Spo10549.1.exon.2	exon
Spo10549.1.exon.3	Spo10549.1.exon.3	exon
Spo10549.1.exon.4	Spo10549.1.exon.4	exon
Spo10549.1.exon.5	Spo10549.1.exon.5	exon
Spo10549.1.exon.6	Spo10549.1.exon.6	exon
Spo10549.1.exon.7	Spo10549.1.exon.7	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10549.1.CDS.1	Spo10549.1.CDS.1	CDS
Spo10549.1.CDS.2	Spo10549.1.CDS.2	CDS
Spo10549.1.CDS.3	Spo10549.1.CDS.3	CDS
Spo10549.1.CDS.4	Spo10549.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10549.1.utr3p.1	Spo10549.1.utr3p.1	three_prime_UTR
Spo10549.1.utr3p.2	Spo10549.1.utr3p.2	three_prime_UTR
Spo10549.1.utr3p.3	Spo10549.1.utr3p.3	three_prime_UTR
Spo10549.1.utr3p.4	Spo10549.1.utr3p.4	three_prime_UTR

Homology

[Close]

BLAST of Spo10549.1 vs. NCBI nr
Match: gi|902100600|gb|KNA03504.1| (hypothetical protein SOVF_208560 [Spinacia oleracea])

HSP 1 Score: 215.3 bits (547), Expect = 5.200e-53
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1

		  
Query: 1   MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
           MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ
Sbjct: 1   MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60

Query: 61  AIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLYILQLDDNS 102
           AIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLYILQLDDNS
Sbjct: 61  AIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLYILQLDDNS 101

[Close]

BLAST of Spo10549.1 vs. NCBI nr
Match: gi|902099826|gb|KNA03491.1| (hypothetical protein SOVF_208700 [Spinacia oleracea])

HSP 1 Score: 182.2 bits (461), Expect = 4.900e-43
Identity = 84/90 (93.33%), Postives = 87/90 (96.67%), Query Frame = 1

		  
Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MSNRFSRTIYVGNLPSDIKER+IEDLFYKYGRILEVE KVPPRPPCFCFVEFEG RDAD+
Sbjct: 1  MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSS 91
          AIRGRDGYNFDGC LRVELAHGGRGSGSS+
Sbjct: 61 AIRGRDGYNFDGCRLRVELAHGGRGSGSSA 90

[Close]

BLAST of Spo10549.1 vs. NCBI nr
Match: gi|1021040295|gb|KZM98076.1| (hypothetical protein DCAR_014562 [Daucus carota subsp. sativus])

HSP 1 Score: 166.4 bits (420), Expect = 2.800e-38
Identity = 75/89 (84.27%), Postives = 80/89 (89.89%), Query Frame = 1

		  
Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS RFSRTIYVGNLP DIKER++EDLFYKYGRI+++E KVPPRPPCFCFVEFE  RDAD 
Sbjct: 1  MSGRFSRTIYVGNLPLDIKEREVEDLFYKYGRIVDIELKVPPRPPCFCFVEFERSRDADD 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSS 90
          AIRGRDGYNFDGC LRVELAHGGRG  SS
Sbjct: 61 AIRGRDGYNFDGCRLRVELAHGGRGQSSS 89

[Close]

BLAST of Spo10549.1 vs. NCBI nr
Match: gi|147788227|emb|CAN71592.1| (hypothetical protein VITISV_015931 [Vitis vinifera])

HSP 1 Score: 166.0 bits (419), Expect = 3.700e-38
Identity = 75/90 (83.33%), Postives = 81/90 (90.00%), Query Frame = 1

		  
Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS RFSRTIYVGNLPSDI+E +IEDLFYKYGRIL+VE K+PPRPPC+CFVEFE  RDA+ 
Sbjct: 1  MSGRFSRTIYVGNLPSDIREYEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENSRDAED 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSS 91
          AIRGRDGYNFDGC LRVELAHGGRG  SSS
Sbjct: 61 AIRGRDGYNFDGCRLRVELAHGGRGQSSSS 90

[Close]

BLAST of Spo10549.1 vs. NCBI nr
Match: gi|302143975|emb|CBI23080.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 166.0 bits (419), Expect = 3.700e-38
Identity = 75/90 (83.33%), Postives = 81/90 (90.00%), Query Frame = 1

		  
Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS RFSRTIYVGNLPSDI+E +IEDLFYKYGRIL+VE K+PPRPPC+CFVEFE  RDA+ 
Sbjct: 1  MSGRFSRTIYVGNLPSDIREYEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENSRDAED 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSS 91
          AIRGRDGYNFDGC LRVELAHGGRG  SSS
Sbjct: 61 AIRGRDGYNFDGCRLRVELAHGGRGQSSSS 90

[Close]

BLAST of Spo10549.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q8C9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_208560 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 3.700e-53
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 1

		  
Query: 1   MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
           MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ
Sbjct: 1   MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60

Query: 61  AIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLYILQLDDNS 102
           AIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLYILQLDDNS
Sbjct: 61  AIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLYILQLDDNS 101

[Close]

BLAST of Spo10549.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QAD1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_208700 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 3.400e-43
Identity = 84/90 (93.33%), Postives = 87/90 (96.67%), Query Frame = 1

		  
Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MSNRFSRTIYVGNLPSDIKER+IEDLFYKYGRILEVE KVPPRPPCFCFVEFEG RDAD+
Sbjct: 1  MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSS 91
          AIRGRDGYNFDGC LRVELAHGGRGSGSS+
Sbjct: 61 AIRGRDGYNFDGCRLRVELAHGGRGSGSSA 90

[Close]

BLAST of Spo10549.1 vs. UniProtKB/TrEMBL
Match: A0A165XE64_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_014562 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.900e-38
Identity = 75/89 (84.27%), Postives = 80/89 (89.89%), Query Frame = 1

		  
Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS RFSRTIYVGNLP DIKER++EDLFYKYGRI+++E KVPPRPPCFCFVEFE  RDAD 
Sbjct: 1  MSGRFSRTIYVGNLPLDIKEREVEDLFYKYGRIVDIELKVPPRPPCFCFVEFERSRDADD 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSS 90
          AIRGRDGYNFDGC LRVELAHGGRG  SS
Sbjct: 61 AIRGRDGYNFDGCRLRVELAHGGRGQSSS 89

[Close]

BLAST of Spo10549.1 vs. UniProtKB/TrEMBL
Match: A5ARR5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015931 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.500e-38
Identity = 75/90 (83.33%), Postives = 81/90 (90.00%), Query Frame = 1

		  
Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS RFSRTIYVGNLPSDI+E +IEDLFYKYGRIL+VE K+PPRPPC+CFVEFE  RDA+ 
Sbjct: 1  MSGRFSRTIYVGNLPSDIREYEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENSRDAED 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSS 91
          AIRGRDGYNFDGC LRVELAHGGRG  SSS
Sbjct: 61 AIRGRDGYNFDGCRLRVELAHGGRGQSSSS 90

[Close]

BLAST of Spo10549.1 vs. UniProtKB/TrEMBL
Match: E0CVB9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g01020 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 2.500e-38
Identity = 75/90 (83.33%), Postives = 81/90 (90.00%), Query Frame = 1

		  
Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS RFSRTIYVGNLPSDI+E +IEDLFYKYGRIL+VE K+PPRPPC+CFVEFE  RDA+ 
Sbjct: 1  MSGRFSRTIYVGNLPSDIREYEIEDLFYKYGRILDVELKIPPRPPCYCFVEFENSRDAED 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSS 91
          AIRGRDGYNFDGC LRVELAHGGRG  SSS
Sbjct: 61 AIRGRDGYNFDGCRLRVELAHGGRGQSSSS 90

[Close]

BLAST of Spo10549.1 vs. ExPASy Swiss-Prot
Match: SR34A_ARATH (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana GN=SR34A PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.400e-37
Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = 1

		  
Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS RFSR+IYVGNLP DI+E +IED+FYKYGRI+++E KVPPRPPC+CFVEFE  RDA+ 
Sbjct: 1  MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSS 90
          AI+GRDGYN DGC LRVELAHGGRG  SS
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSSS 89

[Close]

BLAST of Spo10549.1 vs. ExPASy Swiss-Prot
Match: SR30_ARATH (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana GN=SR30 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.900e-32
Identity = 61/93 (65.59%), Postives = 76/93 (81.72%), Query Frame = 1

		  
Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS+R++RTIYVGNLP DI++ ++EDLFYKYG I++++ K+PPRPP + FVEFE PRDAD 
Sbjct: 1  MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLY 94
          AI GRDGY+FDGC LRVE+AHGGR    S   Y
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRY 93

[Close]

BLAST of Spo10549.1 vs. ExPASy Swiss-Prot
Match: SR34B_ARATH (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana GN=SR34B PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.900e-31
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 1

		  
Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS+R SRTIYVGNLP DI+ER++EDLF KYG +++++ K+PPRPP + FVEFE  RDAD 
Sbjct: 1  MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGS 87
          AI GRDGY+FDG HLRVELAHGGR S
Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGRRS 86

[Close]

BLAST of Spo10549.1 vs. ExPASy Swiss-Prot
Match: SR34_ARATH (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana GN=SR34 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 8.100e-30
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 1

		  
Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS+R SRT+YVGNLP DI+ER++EDLF KYG +++++ KVPPRPP + FVEF+  RDA+ 
Sbjct: 1  MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSS 91
          AI GRDGY+FDG  LRVELAHGGR S   +
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDT 90

[Close]

BLAST of Spo10549.1 vs. ExPASy Swiss-Prot
Match: SRSF1_XENTR (Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis GN=srsf1 PE=2 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.400e-21
Identity = 47/79 (59.49%), Postives = 58/79 (73.42%), Query Frame = 1

		  
Query: 9  IYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQAIRGRDGY 68
          IYVGNLP DI+ +DIED+FYKYG I +++ K     P F FVEFE PRDA+ A+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77

Query: 69 NFDGCHLRVELAHGGRGSG 88
          ++DG  LRVE    GRG+G
Sbjct: 78 DYDGYRLRVEFPRSGRGAG 96

[Close]

BLAST of Spo10549.1 vs. TAIR (Arabidopsis)
Match: AT3G49430.1 (SER/ARG-rich protein 34A)

HSP 1 Score: 156.0 bits (393), Expect = 1.300e-38
Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = 1

		  
Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS RFSR+IYVGNLP DI+E +IED+FYKYGRI+++E KVPPRPPC+CFVEFE  RDA+ 
Sbjct: 1  MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSS 90
          AI+GRDGYN DGC LRVELAHGGRG  SS
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSSS 89

[Close]

BLAST of Spo10549.1 vs. TAIR (Arabidopsis)
Match: AT1G09140.1 (SERINE-ARGININE PROTEIN 30)

HSP 1 Score: 138.7 bits (348), Expect = 2.200e-33
Identity = 61/93 (65.59%), Postives = 76/93 (81.72%), Query Frame = 1

		  
Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS+R++RTIYVGNLP DI++ ++EDLFYKYG I++++ K+PPRPP + FVEFE PRDAD 
Sbjct: 1  MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSSSLY 94
          AI GRDGY+FDGC LRVE+AHGGR    S   Y
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRY 93

[Close]

BLAST of Spo10549.1 vs. TAIR (Arabidopsis)
Match: AT4G02430.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 136.3 bits (342), Expect = 1.100e-32
Identity = 61/86 (70.93%), Postives = 73/86 (84.88%), Query Frame = 1

		  
Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS+R SRTIYVGNLP DI+ER++EDLF KYG +++++ K+PPRPP + FVEFE  RDAD 
Sbjct: 1  MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGS 87
          AI GRDGY+FDG HLRVELAHGGR S
Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGRRS 86

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BLAST of Spo10549.1 vs. TAIR (Arabidopsis)
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 131.0 bits (328), Expect = 4.600e-31
Identity = 58/90 (64.44%), Postives = 73/90 (81.11%), Query Frame = 1

		  
Query: 1  MSNRFSRTIYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQ 60
          MS+R SRT+YVGNLP DI+ER++EDLF KYG +++++ KVPPRPP + FVEF+  RDA+ 
Sbjct: 1  MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61 AIRGRDGYNFDGCHLRVELAHGGRGSGSSS 91
          AI GRDGY+FDG  LRVELAHGGR S   +
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDT 90

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BLAST of Spo10549.1 vs. TAIR (Arabidopsis)
Match: AT2G37340.1 (arginine/serine-rich zinc knuckle-containing protein 33)

HSP 1 Score: 67.0 bits (162), Expect = 8.100e-12
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 1

		  
Query: 3  NRFSRT-IYVGNLPSDIKERDIEDLFYKYGRILEVETKVPPRPPCFCFVEFEGPRDADQA 62
          +R+  T +YVG L S  + RD+E LF +YGR+ +V+ K       + FVEF  PRDAD A
Sbjct: 6  DRYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD-----YAFVEFGDPRDADDA 65

Query: 63 IRGRDGYNFDGCHLRVELAHGG-RGS 87
              DG +FDG  + VE + G  RGS
Sbjct: 66 RHYLDGRDFDGSRITVEFSRGAPRGS 86

The following BLAST results are available for this feature:

BLAST of Spo10549.1 vs. NCBI nr
BLAST of Spo10549.1 vs. UniProtKB/TrEMBL
BLAST of Spo10549.1 vs. ExPASy Swiss-Prot
BLAST of Spo10549.1 vs. TAIR (Arabidopsis)

BLAST of Spo10549.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902100600\|gb\|KNA03504.1\|	5.2e-53	100.	hypothetical protein SOVF_2085...	[more]
gi\|902099826\|gb\|KNA03491.1\|	4.9e-43	93.3	hypothetical protein SOVF_2087...	[more]
gi\|1021040295\|gb\|KZM98076.1\|	2.8e-38	84.2	hypothetical protein DCAR_0145...	[more]
gi\|147788227\|emb\|CAN71592.1\|	3.7e-38	83.3	hypothetical protein VITISV_01...	[more]
gi\|302143975\|emb\|CBI23080.3\|	3.7e-38	83.3	unnamed protein product [Vitis...	[more]

BLAST of Spo10549.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9Q8C9_SPIOL	3.7e-53	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9QAD1_SPIOL	3.4e-43	93.3	Uncharacterized protein OS=Spi...	[more]
A0A165XE64_DAUCA	1.9e-38	84.2	Uncharacterized protein OS=Dau...	[more]
A5ARR5_VITVI	2.5e-38	83.3	Putative uncharacterized prote...	[more]
E0CVB9_VITVI	2.5e-38	83.3	Putative uncharacterized prote...	[more]

BLAST of Spo10549.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
SR34A_ARATH	2.4e-37	76.4	Serine/arginine-rich splicing ...	[more]
SR30_ARATH	3.9e-32	65.5	Serine/arginine-rich splicing ...	[more]
SR34B_ARATH	1.9e-31	70.9	Serine/arginine-rich splicing ...	[more]
SR34_ARATH	8.1e-30	64.4	Serine/arginine-rich-splicing ...	[more]
SRSF1_XENTR	1.4e-21	59.4	Serine/arginine-rich splicing ...	[more]

BLAST of Spo10549.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
AT3G49430.1	1.3e-38	76.4	SER/ARG-rich protein 34A	[more]
AT1G09140.1	2.2e-33	65.5	SERINE-ARGININE PROTEIN 30	[more]
AT4G02430.2	1.1e-32	70.9	RNA-binding (RRM/RBD/RNP motif...	[more]
AT1G02840.1	4.6e-31	64.4	RNA-binding (RRM/RBD/RNP motif...	[more]
AT2G37340.1	8.1e-12	44.1	arginine/serine-rich zinc knuc...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..75 score: 1.0
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..78 score: 2.5
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 7..82 score: 16
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 2..88 score: 7.2
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 6..87 score: 1.21
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 6..80 score: 1.0

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding