Spo10786.1 (mRNA) | SpinachBase

Overview


Name	Spo10786.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Transmembrane protein, putative
Location	chr1 : 41620046 .. 41621401 (-)
Sequence length	1163

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATTGTTGGAAAGCTACTCATTCCCCTCCACTTCTATGGTGGGTTCTACTTTCCTTATCAGAGTTTGACATTTTATAAATCCAACTGATGCCCTCCACTACTCATTACACATGCCTCACATTCAGAAGTCACAGAGGAAAAAAAATATCCCAAGTGCCTTTCATCACCACATCATAACAAGATATGCCCAAATGTATATAATTCTTAGACGGAAGGCGGAGACAGAAAGTGCGCGCCACACTTAACTTCAGAAAATTCCGGTTATCCTCCAAAAGAGCCCCATTATTTGACTTTTTTTCTGGCTTGGAGTAAAAAACGTCTAGGTGTGCATTATCATATCTTAAGCTTTCTAACAATAGCCTTCACTATATATATGTCAACGGTACAACTCTGTATAGTACTCCAGCTACCATAGTGTAATACCTCAAGTTCAGCAATAAAATATGGCTTCCCACATGCTTCATCTCTTTGTGATCATGCTCGCTTGTTCTTACCTTATCTCGTCAAATGCTATCCCCATGTCAAGTAAAATACAGCAAAACTATCTTAAATAAAGTCTCACTATGGTTGTTCTTTTTATATCTTTTCCTTGACTAGTCTTTGTTTTTTTGTCGGTGTTACCATTTCAGGGCTTAGCAATATCCAAAACAAAGGAAGAGAAGTTCTAGCAACAAGAAGCATAAATCAGGTATTTGTACATCTATATATGCAGCTCATGCACCATGTATGAAGGTCATTCCTTTTCCTGTAACTAATTTATGTTCTGTTTTCTAACAGGATCAGATGATACCAGAGGATAAGATGGAGGAGGATTCTATTGAGGGTAGGATGGATTTTGAGAAGAATGATTATGGACCGACAACATCAAATCCAGTCCACACCCCGAGGCCACCACGTCGATGATGCTAAGTGTGTTGCTTATCTCCACAGCTTGTAATAAAACCATAAAACCATATTTGCCATCATAGCTCAGGCAAGTGTAGGCGTGTAGCATATGATGGCAAATTCTGATCCTAACCCTTAATTATGGGGAGATCAGTACCATTAGCTATTTAGCCAACAACTAATGTAAATATCGAGCAATACTTCTTTGATGTATCCTTAATGGTTTGTCTTCAAGGAAATTACATGGCTGGCCCTATCTAATTAGGTTGATCATAAATGGGTTGGTCAGTTGGTAGCTAGGCTAGTTTCTGTTACATAGATATGTCTTAAGACTCTTAACCTGTAATGATCTTCTACTTTCTAATAGTATGAAATTTATCTTATAGAAATCATTAGATCACACTGTTCCAACTAGATTGTTAATTTCTTTCACTTTAAGGTTGATCAGACAAGAAGTACTAAAGTGCGT

mRNA sequence

ATTATTGTTGGAAAGCTACTCATTCCCCTCCACTTCTATGGTGGGTTCTACTTTCCTTATCAGAGTTTGACATTTTATAAATCCAACTGATGCCCTCCACTACTCATTACACATGCCTCACATTCAGAAGTCACAGAGGAAAAAAAATATCCCAAGTGCCTTTCATCACCACATCATAACAAGATATGCCCAAATGTATATAATTCTTAGACGGAAGGCGGAGACAGAAAGTGCGCGCCACACTTAACTTCAGAAAATTCCGGTTATCCTCCAAAAGAGCCCCATTATTTGACTTTTTTTCTGGCTTGGAGTAAAAAACGTCTAGGTGTGCATTATCATATCTTAAGCTTTCTAACAATAGCCTTCACTATATATATGTCAACGGTACAACTCTGTATAGTACTCCAGCTACCATAGTGTAATACCTCAAGTTCAGCAATAAAATATGGCTTCCCACATGCTTCATCTCTTTGTGATCATGCTCGCTTGTTCTTACCTTATCTCGTCAAATGCTATCCCCATGTCAAGGCTTAGCAATATCCAAAACAAAGGAAGAGAAGTTCTAGCAACAAGAAGCATAAATCAGGATCAGATGATACCAGAGGATAAGATGGAGGAGGATTCTATTGAGGGTAGGATGGATTTTGAGAAGAATGATTATGGACCGACAACATCAAATCCAGTCCACACCCCGAGGCCACCACGTCGATGATGCTAAGTGTGTTGCTTATCTCCACAGCTTGTAATAAAACCATAAAACCATATTTGCCATCATAGCTCAGGCAAGTGTAGGCGTGTAGCATATGATGGCAAATTCTGATCCTAACCCTTAATTATGGGGAGATCAGTACCATTAGCTATTTAGCCAACAACTAATGTAAATATCGAGCAATACTTCTTTGATGTATCCTTAATGGTTTGTCTTCAAGGAAATTACATGGCTGGCCCTATCTAATTAGGTTGATCATAAATGGGTTGGTCAGTTGGTAGCTAGGCTAGTTTCTGTTACATAGATATGTCTTAAGACTCTTAACCTGTAATGATCTTCTACTTTCTAATAGTATGAAATTTATCTTATAGAAATCATTAGATCACACTGTTCCAACTAGATTGTTAATTTCTTTCACTTTAAGGTTGATCAGACAAGAAGTACTAAAGTGCGT

Coding sequence (CDS)

ATGGCTTCCCACATGCTTCATCTCTTTGTGATCATGCTCGCTTGTTCTTACCTTATCTCGTCAAATGCTATCCCCATGTCAAGGCTTAGCAATATCCAAAACAAAGGAAGAGAAGTTCTAGCAACAAGAAGCATAAATCAGGATCAGATGATACCAGAGGATAAGATGGAGGAGGATTCTATTGAGGGTAGGATGGATTTTGAGAAGAATGATTATGGACCGACAACATCAAATCCAGTCCACACCCCGAGGCCACCACGTCGATGA

Protein sequence

MASHMLHLFVIMLACSYLISSNAIPMSRLSNIQNKGREVLATRSINQDQMIPEDKMEEDSIEGRMDFEKNDYGPTTSNPVHTPRPPRR

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo10786	Spo10786	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo10786.1	Spo10786.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10786.1.utr5p.1	Spo10786.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10786.1.CDS.3	Spo10786.1.CDS.3	CDS
Spo10786.1.CDS.2	Spo10786.1.CDS.2	CDS
Spo10786.1.CDS.1	Spo10786.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10786.1.utr3p.1	Spo10786.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10786.1.exon.3	Spo10786.1.exon.3	exon
Spo10786.1.exon.2	Spo10786.1.exon.2	exon
Spo10786.1.exon.1	Spo10786.1.exon.1	exon

Homology

[Close]

BLAST of Spo10786.1 vs. NCBI nr
Match: gi|902169337|gb|KNA07651.1| (hypothetical protein SOVF_169960 [Spinacia oleracea])

HSP 1 Score: 151.4 bits (381), Expect = 7.500e-34
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1


		  
Query: 12 MLACSYLISSNAIPMSRLSNIQNKGREVLATRSINQDQMIPEDKMEEDSIEGRMDFEKND 71
          MLACSYLISSNAIPMSRLSNIQNKGREVL TRSINQDQMIPEDKMEEDSIEGRMDFEKND
Sbjct: 1  MLACSYLISSNAIPMSRLSNIQNKGREVLETRSINQDQMIPEDKMEEDSIEGRMDFEKND 60

Query: 72 YGPTTSNPVHTPRPPRR 89
          YGPTTSNPVHTPRPPRR
Sbjct: 61 YGPTTSNPVHTPRPPRR 77

[Close]

BLAST of Spo10786.1 vs. NCBI nr
Match: gi|870855312|gb|KMT07045.1| (hypothetical protein BVRB_6g153740 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 121.7 bits (304), Expect = 6.400e-25
Identity = 63/88 (71.59%), Postives = 76/88 (86.36%), Query Frame = 1


		  
Query: 1  MASHMLHLFVIMLACSYLI-SSNAIPMSRLSNIQNKGREVLATRSINQDQMIPEDKMEED 60
          MASH++ +FV++LACSYLI SSNAIP SRLSN+   GR V+ T+S+++ QMI E KME++
Sbjct: 1  MASHVVPMFVLVLACSYLIISSNAIPASRLSNLPTIGRAVVVTKSMDEGQMISEAKMEDE 60

Query: 61 SIEGRMDFEKNDYGPTTSNPVHTPRPPR 88
           IEGRMDFEKNDYGPTTSNPVHTPRPPR
Sbjct: 61 FIEGRMDFEKNDYGPTTSNPVHTPRPPR 88

[Close]

BLAST of Spo10786.1 vs. NCBI nr
Match: gi|719965919|ref|XP_010257658.1| (PREDICTED: uncharacterized protein LOC104597668 [Nelumbo nucifera])

HSP 1 Score: 58.9 bits (141), Expect = 5.100e-6
Identity = 38/87 (43.68%), Postives = 52/87 (59.77%), Query Frame = 1


		  
Query: 1  MASHMLHLFVIMLACSYLISSNAIPMSRLSNIQNKGREVLATRSINQD-QMIPEDKMEED 60
          MA   LHL VI+L+ S+LIS NA+P++R  N+ +  R +L   S N   Q   E+  EE+
Sbjct: 1  MAGSPLHLLVILLSFSHLISLNAVPITRTRNLLSDTRVLLPADSENTHLQASTEEVWEEE 60

Query: 61 SIEGRMDFEKNDYGPTTSNPVHTPRPP 87
             GRM  E NDY  + +N  HTP+PP
Sbjct: 61 LANGRMGLELNDYPGSGANNRHTPKPP 87

[Close]

BLAST of Spo10786.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QM67_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_169960 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 5.200e-34
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1


		  
Query: 12 MLACSYLISSNAIPMSRLSNIQNKGREVLATRSINQDQMIPEDKMEEDSIEGRMDFEKND 71
          MLACSYLISSNAIPMSRLSNIQNKGREVL TRSINQDQMIPEDKMEEDSIEGRMDFEKND
Sbjct: 1  MLACSYLISSNAIPMSRLSNIQNKGREVLETRSINQDQMIPEDKMEEDSIEGRMDFEKND 60

Query: 72 YGPTTSNPVHTPRPPRR 89
          YGPTTSNPVHTPRPPRR
Sbjct: 61 YGPTTSNPVHTPRPPRR 77

[Close]

BLAST of Spo10786.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BZX1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g153740 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.400e-25
Identity = 63/88 (71.59%), Postives = 76/88 (86.36%), Query Frame = 1


		  
Query: 1  MASHMLHLFVIMLACSYLI-SSNAIPMSRLSNIQNKGREVLATRSINQDQMIPEDKMEED 60
          MASH++ +FV++LACSYLI SSNAIP SRLSN+   GR V+ T+S+++ QMI E KME++
Sbjct: 1  MASHVVPMFVLVLACSYLIISSNAIPASRLSNLPTIGRAVVVTKSMDEGQMISEAKMEDE 60

Query: 61 SIEGRMDFEKNDYGPTTSNPVHTPRPPR 88
           IEGRMDFEKNDYGPTTSNPVHTPRPPR
Sbjct: 61 FIEGRMDFEKNDYGPTTSNPVHTPRPPR 88

The following BLAST results are available for this feature:

BLAST of Spo10786.1 vs. NCBI nr
BLAST of Spo10786.1 vs. UniProtKB/TrEMBL
BLAST of Spo10786.1 vs. ExPASy Swiss-Prot
BLAST of Spo10786.1 vs. TAIR (Arabidopsis)

BLAST of Spo10786.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3


Match Name	E-value	Identity	Description
gi\|902169337\|gb\|KNA07651.1\|	7.5e-34	98.7	hypothetical protein SOVF_1699...	[more]
gi\|870855312\|gb\|KMT07045.1\|	6.4e-25	71.5	hypothetical protein BVRB_6g15...	[more]
gi\|719965919\|ref\|XP_010257658.1\|	5.1e-6	43.6	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo10786.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2


Match Name	E-value	Identity	Description
A0A0K9QM67_SPIOL	5.2e-34	98.7	Uncharacterized protein OS=Spi...	[more]
A0A0J8BZX1_BETVU	4.4e-25	71.5	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo10786.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo10786.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33474	FAMILY NOT NAMED	coord: 1..88 score: 2.8
None	No IPR available	PANTHER	PTHR33474:SF6	SUBFAMILY NOT NAMED	coord: 1..88 score: 2.8