Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTCCTGCTTTAGCTGCTACTCCCCCATCTTCAATTCTTGTGCACACTGGTGAAAGTGACAATTTCTTGAAATGTGGGGGAAATAATTATGTGCCAAACATGTCTTTATCAAACAAAGATTTTAGTACTAGTTCTATTCTTAATCAAGCCAATGGAATTGGTGTAATAGGAGGGGTATCTCTTGATTCTACAATGAATTTCTTGCATAAGCTTGTGCAATGGGGATCAATGGAGGGAAAGGATTGTTCTCCTCCATTCATGCTTTGTTCTGATCCACAGTTAACGGATTTGCTCTTGAACTATGAAAGAAGTTCTTTTCCTTCACTTTACACTCAAGTAAAACCCTGTAATTTAGATCATACTCCGATTGTAGCGAACTTGAACTGCAAAAGGGCATTTCTTGAACAAGGGGGTGCTAAATGCTTAGTGATGCCTTGCCATTTGTTGCATTCTTGGCATGGTGATGTTTCTATTGGATGCAGTGTGCCTGTTCTTCATATGGGTGAGTGTGTGGCTAAGGAGTTGAAGGAAGCCAAATTAAGGCCTCTTGAAACTGGATGTCCTTTGAGAATTGGTGTTGTTGGTAGTGATGCTGTATTGAAATCAGGGTTTTATCAGGAAAAGCTACAGAATGAGGTATTTGTTTCAATGCTTTTGGCCTTTTACTTCATATATTTTGGATTGAGAATGCAGATTAGATATGCTTGCTTGTTTACTACAGGAATCTGTTCTTAACATTTATAAAACTTGCATTTTGTTTAATAGGTCATTGGTTGAGTTGATTTAGGATATTAGGAGCAGAAACAAGCTGAGTTACGAGGATATTATCTTGTGAATGGAAGTTGAACTCCGAGTATCTTGATTGTAGGAAGAAACTAACCTTTAGGATGAAACTATAAAATAAAATAAAAAATGAAAAATAAAGTCTTGCGTCCTCCCTCTTCTTTCTTCTTGGAATCTTGATTTTATAATGACAAGAATTGCTGACAGTTCAATGGGGATTTAAGGTTAGACCGTTTAGCCGGAATCACTACAAAATACATGACAACTAGACCTGGTTACTCCGTATTGTACAGGGTAGCCCAATGGGTATAGGGTTTGGGTCAAGTTAATAAGGTTCTTATTGGACAAAAAATTATATGGATAGCTTCGTATTAATCCTTTTTTTTCCATTGTTCCTTGTTCGTTTATAGACCCGCCCACAATCGGCCCGCTATTGACCCGTGACCCGCTTTGACCCACCCACCATGGACCTGCTAAAATTGACCGTTTCATTACCCGACCCGCTTTTGACAACATGATATATAAAAGGATCTCAAGGATCTTGACTGAAGGGGGTCATAACTCATTCATTAAAACAACAATTAGCAGTTTAGCACTATTCTTGTCAAAGCATTGTTAGCCTTGCTCTAATATAGTGGCAGTGAAAGCTCATTAAAGCCTTTTGAAATCACAAACTATTGAAATTGTGCTATCTTATTGTGATTTTCTTTAACTCGTGAGAACTTCAAAAGGAGATTTCTGTTATATAGTGGCTTGGTAATGATATAAGTACGTTCTTCAAAAGTTGTTGAATATGGCATAGGTTTATCTGGTATTAGTGCAATTTTCTGTGGCATCAAGCAGCAAGATGCAACATAACAGACTCGATAATATTTTGTGCTTGTTTGGTAGTTGTTTAATAATGCTTAATTAATACTCCCTCCGTCCCTTAATACTCGACCTGTTTAGCACTATGATTGATTTACCCTTGCCCTTGTGACTTGTGAGTGGTTAAAGATTACAACTATCAAATCCAGTAATTTTCTTGCACCCGAATTCTATGTTAGGGATTTGAGGTGGTGCTCCCTGATAAAGCAACCATGGAACACGCAGTGCGTCCTGCTATCGAAGCTTTAGACAGGAAAGACATTGAAGGTGCCCGGAACTTGTTAAGAATTGCTCTTCAGGTTCTTTTGGTGAGAGCTGTAAACATGGTCATCATTGCCTCTCATGATATGCGCGAGCTTTTACCTCATGATGACCCTCTCCTTAAGAAATGCATTGATCCAATTGATTCTTTGGTCAGGTCAACTATCATATGGGCTCAATCCGTTGAAACAGGTTCACATTGAACAAATTATTAAGCTGCATGGGGGTAAATGAGTAAATGCCATTCATTGGTTGATGCAGGAGTTCACTTACAGATTAACAATATTGGTTTCAGGCTTTGTGAAGGACAGGACAGAACAGAACAGAACAGATGTGTTATGTGTAACTTCGTATTGGCAAAGTTCTGCAATTGTTTGGTATTTCATCCTCTACAAGTCAAATTCAATCCATTTATCTGGTATTTTTTTTGTTACATTCTCTTATATAACCATCTGTATCAATGCCTCAAATTTGTACAGCCCCTGGAATAAATTAATCAAAATTCTGAATCTGAAATATCCCTTGAACTTTTTTTGTCAAATACTTTGTATTAAAATCATCTTAATTCTTGCAGTCTGTACTTTCTGGAAGTATGGACTAAGAAAACTGTTGCAGATTGGTGATAACCATACATAAATTATTCTTCTC ATGATTCCTGCTTTAGCTGCTACTCCCCCATCTTCAATTCTTGTGCACACTGGTGAAAGTGACAATTTCTTGAAATGTGGGGGAAATAATTATGTGCCAAACATGTCTTTATCAAACAAAGATTTTAGTACTAGTTCTATTCTTAATCAAGCCAATGGAATTGGTGTAATAGGAGGGGTATCTCTTGATTCTACAATGAATTTCTTGCATAAGCTTGTGCAATGGGGATCAATGGAGGGAAAGGATTGTTCTCCTCCATTCATGCTTTGTTCTGATCCACAGTTAACGGATTTGCTCTTGAACTATGAAAGAAGTTCTTTTCCTTCACTTTACACTCAAGTAAAACCCTGTAATTTAGATCATACTCCGATTGTAGCGAACTTGAACTGCAAAAGGGCATTTCTTGAACAAGGGGGTGCTAAATGCTTAGTGATGCCTTGCCATTTGTTGCATTCTTGGCATGGTGATGTTTCTATTGGATGCAGTGTGCCTGTTCTTCATATGGGTGAGTGTGTGGCTAAGGAGTTGAAGGAAGCCAAATTAAGGCCTCTTGAAACTGGATGTCCTTTGAGAATTGGTGTTGTTGGTAGTGATGCTGTATTGAAATCAGGGTTTTATCAGGAAAAGCTACAGAATGAGGGATTTGAGGTGGTGCTCCCTGATAAAGCAACCATGGAACACGCAGTGCGTCCTGCTATCGAAGCTTTAGACAGGAAAGACATTGAAGGTGCCCGGAACTTGTTAAGAATTGCTCTTCAGGTTCTTTTGGTGAGAGCTGTAAACATGGTCATCATTGCCTCTCATGATATGCGCGAGCTTTTACCTCATGATGACCCTCTCCTTAAGAAATGCATTGATCCAATTGATTCTTTGGTCAGGTCAACTATCATATGGGCTCAATCCGTTGAAACAGGTTCACATTGAACAAATTATTAAGCTGCATGGGGGTAAATGAGTAAATGCCATTCATTGGTTGATGCAGGAGTTCACTTACAGATTAACAATATTGGTTTCAGGCTTTGTGAAGGACAGGACAGAACAGAACAGAACAGATGTGTTATGTGTAACTTCGTATTGGCAAAGTTCTGCAATTGTTTGGTATTTCATCCTCTACAAGTCAAATTCAATCCATTTATCTGGTATTTTTTTTGTTACATTCTCTTATATAACCATCTGTATCAATGCCTCAAATTTGTACAGCCCCTGGAATAAATTAATCAAAATTCTGAATCTGAAATATCCCTTGAACTTTTTTTGTCAAATACTTTGTATTAAAATCATCTTAATTCTTGCAGTCTGTACTTTCTGGAAGTATGGACTAAGAAAACTGTTGCAGATTGGTGATAACCATACATAAATTATTCTTCTC ATGATTCCTGCTTTAGCTGCTACTCCCCCATCTTCAATTCTTGTGCACACTGGTGAAAGTGACAATTTCTTGAAATGTGGGGGAAATAATTATGTGCCAAACATGTCTTTATCAAACAAAGATTTTAGTACTAGTTCTATTCTTAATCAAGCCAATGGAATTGGTGTAATAGGAGGGGTATCTCTTGATTCTACAATGAATTTCTTGCATAAGCTTGTGCAATGGGGATCAATGGAGGGAAAGGATTGTTCTCCTCCATTCATGCTTTGTTCTGATCCACAGTTAACGGATTTGCTCTTGAACTATGAAAGAAGTTCTTTTCCTTCACTTTACACTCAAGTAAAACCCTGTAATTTAGATCATACTCCGATTGTAGCGAACTTGAACTGCAAAAGGGCATTTCTTGAACAAGGGGGTGCTAAATGCTTAGTGATGCCTTGCCATTTGTTGCATTCTTGGCATGGTGATGTTTCTATTGGATGCAGTGTGCCTGTTCTTCATATGGGTGAGTGTGTGGCTAAGGAGTTGAAGGAAGCCAAATTAAGGCCTCTTGAAACTGGATGTCCTTTGAGAATTGGTGTTGTTGGTAGTGATGCTGTATTGAAATCAGGGTTTTATCAGGAAAAGCTACAGAATGAGGGATTTGAGGTGGTGCTCCCTGATAAAGCAACCATGGAACACGCAGTGCGTCCTGCTATCGAAGCTTTAGACAGGAAAGACATTGAAGGTGCCCGGAACTTGTTAAGAATTGCTCTTCAGGTTCTTTTGGTGAGAGCTGTAAACATGGTCATCATTGCCTCTCATGATATGCGCGAGCTTTTACCTCATGATGACCCTCTCCTTAAGAAATGCATTGATCCAATTGATTCTTTGGTCAGGTCAACTATCATATGGGCTCAATCCGTTGAAACAGGTTCACATTGA MIPALAATPPSSILVHTGESDNFLKCGGNNYVPNMSLSNKDFSTSSILNQANGIGVIGGVSLDSTMNFLHKLVQWGSMEGKDCSPPFMLCSDPQLTDLLLNYERSSFPSLYTQVKPCNLDHTPIVANLNCKRAFLEQGGAKCLVMPCHLLHSWHGDVSIGCSVPVLHMGECVAKELKEAKLRPLETGCPLRIGVVGSDAVLKSGFYQEKLQNEGFEVVLPDKATMEHAVRPAIEALDRKDIEGARNLLRIALQVLLVRAVNMVIIASHDMRELLPHDDPLLKKCIDPIDSLVRSTIIWAQSVETGSH Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Spo11090.1 vs. NCBI nr
Match: gi|902237485|gb|KNA24824.1| (hypothetical protein SOVF_012330 [Spinacia oleracea]) HSP 1 Score: 628.6 bits (1620), Expect = 5.600e-177 Identity = 306/307 (99.67%), Postives = 306/307 (99.67%), Query Frame = 1
BLAST of Spo11090.1 vs. NCBI nr
Match: gi|731359242|ref|XP_010691177.1| (PREDICTED: uncharacterized protein LOC104904587 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 515.0 bits (1325), Expect = 9.000e-143 Identity = 255/306 (83.33%), Postives = 276/306 (90.20%), Query Frame = 1
BLAST of Spo11090.1 vs. NCBI nr
Match: gi|147819141|emb|CAN68957.1| (hypothetical protein VITISV_015733 [Vitis vinifera]) HSP 1 Score: 391.0 bits (1003), Expect = 2.000e-105 Identity = 198/302 (65.56%), Postives = 236/302 (78.15%), Query Frame = 1
BLAST of Spo11090.1 vs. NCBI nr
Match: gi|731402686|ref|XP_010654761.1| (PREDICTED: uncharacterized protein LOC100249822 isoform X2 [Vitis vinifera]) HSP 1 Score: 389.4 bits (999), Expect = 5.700e-105 Identity = 197/302 (65.23%), Postives = 235/302 (77.81%), Query Frame = 1
BLAST of Spo11090.1 vs. NCBI nr
Match: gi|731402684|ref|XP_002281753.2| (PREDICTED: uncharacterized protein LOC100249822 isoform X1 [Vitis vinifera]) HSP 1 Score: 389.4 bits (999), Expect = 5.700e-105 Identity = 197/301 (65.45%), Postives = 234/301 (77.74%), Query Frame = 1
BLAST of Spo11090.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S0W8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_012330 PE=4 SV=1) HSP 1 Score: 628.6 bits (1620), Expect = 3.900e-177 Identity = 306/307 (99.67%), Postives = 306/307 (99.67%), Query Frame = 1
BLAST of Spo11090.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BKX6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g219870 PE=4 SV=1) HSP 1 Score: 515.0 bits (1325), Expect = 6.300e-143 Identity = 255/306 (83.33%), Postives = 276/306 (90.20%), Query Frame = 1
BLAST of Spo11090.1 vs. UniProtKB/TrEMBL
Match: A5AFE5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015733 PE=4 SV=1) HSP 1 Score: 391.0 bits (1003), Expect = 1.400e-105 Identity = 198/302 (65.56%), Postives = 236/302 (78.15%), Query Frame = 1
BLAST of Spo11090.1 vs. UniProtKB/TrEMBL
Match: B9GWD2_POPTR (Aspartate-glutamate racemase family protein OS=Populus trichocarpa GN=POPTR_0003s06030g PE=4 SV=1) HSP 1 Score: 376.3 bits (965), Expect = 3.500e-101 Identity = 189/300 (63.00%), Postives = 231/300 (77.00%), Query Frame = 1
BLAST of Spo11090.1 vs. UniProtKB/TrEMBL
Match: B9RV29_RICCO (Racemase and epimerase, acting on amino acids and derivatives, putative OS=Ricinus communis GN=RCOM_0898340 PE=4 SV=1) HSP 1 Score: 374.4 bits (960), Expect = 1.300e-100 Identity = 187/297 (62.96%), Postives = 227/297 (76.43%), Query Frame = 1
BLAST of Spo11090.1 vs. ExPASy Swiss-Prot
Match: RACD_PYRHO (Aspartate racemase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=PH0670 PE=1 SV=1) HSP 1 Score: 72.8 bits (177), Expect = 7.400e-12 Identity = 53/246 (21.54%), Postives = 105/246 (42.68%), Query Frame = 1
BLAST of Spo11090.1 vs. ExPASy Swiss-Prot
Match: RACD_THEK8 (Aspartate racemase OS=Thermococcus sp. (strain KS-8) PE=1 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 2.800e-11 Identity = 56/253 (22.13%), Postives = 105/253 (41.50%), Query Frame = 1
BLAST of Spo11090.1 vs. ExPASy Swiss-Prot
Match: RACD_ENTFC (Aspartate racemase OS=Enterococcus faecium PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 3.200e-7 Identity = 27/84 (32.14%), Postives = 48/84 (57.14%), Query Frame = 1
BLAST of Spo11090.1 vs. ExPASy Swiss-Prot
Match: RACD_ENTFU (Aspartate racemase OS=Enterococcus faecium (strain Aus0004) GN=EFAU004_01689 PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 3.200e-7 Identity = 27/84 (32.14%), Postives = 48/84 (57.14%), Query Frame = 1
BLAST of Spo11090.1 vs. TAIR (Arabidopsis)
Match: AT1G15410.1 (aspartate-glutamate racemase family) HSP 1 Score: 337.8 bits (865), Expect = 7.000e-93 Identity = 169/296 (57.09%), Postives = 219/296 (73.99%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo11090.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo11090.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo11090.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 4
BLAST of Spo11090.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|