Spo11098.1 (mRNA) | SpinachBase

Overview


Name	Spo11098.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_11535 : 799 .. 1044 (+)
Sequence length	246

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTTCTTAAAAAAGGTATTCGGGTTTCTAGGGTTTCCGAAGGATGAAGGTCATGAATCCAGGGAGGAAGATGACGATGTTAATACTACTAATAATTCCGACGATGTTCATCGCAATCGGATGAATGTAGACCCAATTCATACGGGACCACGTAAAGGGTTCAGTGTTCCAGTCCAAGTTCCCGTTGAACGTCCTGCTGTGGGTCCCATTTTGGTCCCTTGTAATGGCAATGGTGGACTTCAG

mRNA sequence

ATGAGGTTCTTAAAAAAGGTATTCGGGTTTCTAGGGTTTCCGAAGGATGAAGGTCATGAATCCAGGGAGGAAGATGACGATGTTAATACTACTAATAATTCCGACGATGTTCATCGCAATCGGATGAATGTAGACCCAATTCATACGGGACCACGTAAAGGGTTCAGTGTTCCAGTCCAAGTTCCCGTTGAACGTCCTGCTGTGGGTCCCATTTTGGTCCCTTGTAATGGCAATGGTGGACTTCAG

Coding sequence (CDS)

ATGAGGTTCTTAAAAAAGGTATTCGGGTTTCTAGGGTTTCCGAAGGATGAAGGTCATGAATCCAGGGAGGAAGATGACGATGTTAATACTACTAATAATTCCGACGATGTTCATCGCAATCGGATGAATGTAGACCCAATTCATACGGGACCACGTAAAGGGTTCAGTGTTCCAGTCCAAGTTCCCGTTGAACGTCCTGCTGTGGGTCCCATTTTGGTCCCTTGTAATGGCAATGGTGGACTTCAG

Protein sequence

MRFLKKVFGFLGFPKDEGHESREEDDDVNTTNNSDDVHRNRMNVDPIHTGPRKGFSVPVQVPVERPAVGPILVPCNGNGGLQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo11098	Spo11098	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo11098.1	Spo11098.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11098.1.exon.1	Spo11098.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11098.1.CDS.1	Spo11098.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo11098.1 vs. NCBI nr
Match: gi|902240115|gb|KNA25885.1| (hypothetical protein SOVF_002580 [Spinacia oleracea])

HSP 1 Score: 172.6 bits (436), Expect = 2.900e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


		  
Query: 1  MRFLKKVFGFLGFPKDEGHESREEDDDVNTTNNSDDVHRNRMNVDPIHTGPRKGFSVPVQ 60
          MRFLKKVFGFLGFPKDEGHESREEDDDVNTTNNSDDVHRNRMNVDPIHTGPRKGFSVPVQ
Sbjct: 1  MRFLKKVFGFLGFPKDEGHESREEDDDVNTTNNSDDVHRNRMNVDPIHTGPRKGFSVPVQ 60

Query: 61 VPVERPAVGPILVPCNGNGGLQ 83
          VPVERPAVGPILVPCNGNGGLQ
Sbjct: 61 VPVERPAVGPILVPCNGNGGLQ 82

[Close]

BLAST of Spo11098.1 vs. NCBI nr
Match: gi|731332533|ref|XP_010677256.1| (PREDICTED: uncharacterized protein LOC104892930 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 142.1 bits (357), Expect = 4.200e-31
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 1


		  
Query: 1  MRFLKKVFGFLGFPKDEGHESREEDDDVNTTNNSDDVHRNRMNVDPIHTGPRKGFSVPVQ 60
          MRFLK+V GFLGF KDE HE++E+DDDVN  NNSDD HRNRMNVDPIH GPRKGFSVPVQ
Sbjct: 1  MRFLKRVAGFLGFGKDESHEAKEDDDDVNR-NNSDDNHRNRMNVDPIHAGPRKGFSVPVQ 60

Query: 61 VPVERPAVGPILVPCNGNGGLQ 83
          VPVERP VGPILVPCNG+GGLQ
Sbjct: 61 VPVERPVVGPILVPCNGDGGLQ 81

[Close]

BLAST of Spo11098.1 vs. NCBI nr
Match: gi|703129293|ref|XP_010104329.1| (hypothetical protein L484_023280 [Morus notabilis])

HSP 1 Score: 79.7 bits (195), Expect = 2.600e-12
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 1


		  
Query: 1  MRFLKKVFGFLGFPKDEGHESREEDDDVNTTNNSDDVH-----RNRMNVDPIHTG-PRKG 60
          M F +++ GFLGF KD+GHE ++EDDD +  ++ +D +     RNR+++    TG PRKG
Sbjct: 1  MGFFRRIAGFLGFAKDDGHEVKDEDDDDHHHHHHEDGNTASQPRNRVHMK--ETGLPRKG 60

Query: 61 FSVPVQVPVERPAVGPILVPCN-GNGGLQ 83
          FSVPVQV V+R   GP+L PCN G+GGLQ
Sbjct: 61 FSVPVQVAVDRSHPGPLLAPCNSGDGGLQ 87

[Close]

BLAST of Spo11098.1 vs. NCBI nr
Match: gi|590675723|ref|XP_007039528.1| (Uncharacterized protein TCM_015734 [Theobroma cacao])

HSP 1 Score: 79.0 bits (193), Expect = 4.400e-12
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 1


		  
Query: 1  MRFLKKVFGFLGFPKDEGHESREEDDDVNTTNNSDDVHRNRMNVDPIHTGPRKGFSVPVQ 60
          MRF +++ G LGF +D+GHE +EE+D  N+ NN+++   +   V      PR+GFSVPVQ
Sbjct: 1  MRFFRRIAGLLGFVRDDGHEVKEENDHHNSNNNNNNQPPSNRPVFQETGLPRRGFSVPVQ 60

Query: 61 VPVERPAVGPILVPC-NGNGGLQ 83
          V V+RP  GP+L+PC +G+GG+Q
Sbjct: 61 VAVDRPQPGPLLLPCTSGDGGVQ 83

[Close]

BLAST of Spo11098.1 vs. NCBI nr
Match: gi|743809805|ref|XP_011018589.1| (PREDICTED: uncharacterized protein LOC105121582 [Populus euphratica])

HSP 1 Score: 75.5 bits (184), Expect = 4.900e-11
Identity = 49/92 (53.26%), Postives = 58/92 (63.04%), Query Frame = 1


		  
Query: 1  MRFLKKVFGFLGFPKDEG--------HESREEDDDVNTTNNSDDVHRNRMNVDPIHTG-P 60
          MRF K++ GFLGF KD+G        HE  EE DD    N+   VH  R N     TG P
Sbjct: 1  MRFFKRIAGFLGFAKDDGGYDVKDQQHEEAEEQDDHQHPNH---VHF-RSNFQ--ETGLP 60

Query: 61 RKGFSVPVQVPVERPAVGPILVPC-NGNGGLQ 83
          RKGF VPVQV VERP +GP++VPC +G+GGLQ
Sbjct: 61 RKGFGVPVQVAVERPQLGPLIVPCISGDGGLQ 86

[Close]

BLAST of Spo11098.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S2A9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_002580 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.000e-40
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


		  
Query: 1  MRFLKKVFGFLGFPKDEGHESREEDDDVNTTNNSDDVHRNRMNVDPIHTGPRKGFSVPVQ 60
          MRFLKKVFGFLGFPKDEGHESREEDDDVNTTNNSDDVHRNRMNVDPIHTGPRKGFSVPVQ
Sbjct: 1  MRFLKKVFGFLGFPKDEGHESREEDDDVNTTNNSDDVHRNRMNVDPIHTGPRKGFSVPVQ 60

Query: 61 VPVERPAVGPILVPCNGNGGLQ 83
          VPVERPAVGPILVPCNGNGGLQ
Sbjct: 61 VPVERPAVGPILVPCNGNGGLQ 82

[Close]

BLAST of Spo11098.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F6U9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g106140 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.000e-31
Identity = 69/82 (84.15%), Postives = 74/82 (90.24%), Query Frame = 1


		  
Query: 1  MRFLKKVFGFLGFPKDEGHESREEDDDVNTTNNSDDVHRNRMNVDPIHTGPRKGFSVPVQ 60
          MRFLK+V GFLGF KDE HE++E+DDDVN  NNSDD HRNRMNVDPIH GPRKGFSVPVQ
Sbjct: 1  MRFLKRVAGFLGFGKDESHEAKEDDDDVNR-NNSDDNHRNRMNVDPIHAGPRKGFSVPVQ 60

Query: 61 VPVERPAVGPILVPCNGNGGLQ 83
          VPVERP VGPILVPCNG+GGLQ
Sbjct: 61 VPVERPVVGPILVPCNGDGGLQ 81

[Close]

BLAST of Spo11098.1 vs. UniProtKB/TrEMBL
Match: W9RN67_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023280 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.800e-12
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 1


		  
Query: 1  MRFLKKVFGFLGFPKDEGHESREEDDDVNTTNNSDDVH-----RNRMNVDPIHTG-PRKG 60
          M F +++ GFLGF KD+GHE ++EDDD +  ++ +D +     RNR+++    TG PRKG
Sbjct: 1  MGFFRRIAGFLGFAKDDGHEVKDEDDDDHHHHHHEDGNTASQPRNRVHMK--ETGLPRKG 60

Query: 61 FSVPVQVPVERPAVGPILVPCN-GNGGLQ 83
          FSVPVQV V+R   GP+L PCN G+GGLQ
Sbjct: 61 FSVPVQVAVDRSHPGPLLAPCNSGDGGLQ 87

[Close]

BLAST of Spo11098.1 vs. UniProtKB/TrEMBL
Match: A0A061GAG1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_015734 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.100e-12
Identity = 40/83 (48.19%), Postives = 59/83 (71.08%), Query Frame = 1


		  
Query: 1  MRFLKKVFGFLGFPKDEGHESREEDDDVNTTNNSDDVHRNRMNVDPIHTGPRKGFSVPVQ 60
          MRF +++ G LGF +D+GHE +EE+D  N+ NN+++   +   V      PR+GFSVPVQ
Sbjct: 1  MRFFRRIAGLLGFVRDDGHEVKEENDHHNSNNNNNNQPPSNRPVFQETGLPRRGFSVPVQ 60

Query: 61 VPVERPAVGPILVPC-NGNGGLQ 83
          V V+RP  GP+L+PC +G+GG+Q
Sbjct: 61 VAVDRPQPGPLLLPCTSGDGGVQ 83

[Close]

BLAST of Spo11098.1 vs. UniProtKB/TrEMBL
Match: A0A166F7Q7_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_008278 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.300e-10
Identity = 43/83 (51.81%), Postives = 53/83 (63.86%), Query Frame = 1


		  
Query: 1  MRFLKKVFGFLGFPKDEGHESREEDDDVNTTNNSDDVHRNRMNVDPIHTGPRKGFSVPVQ 60
          M+FLKK+ G LG  KDE HES+  D+ VN      D HR  ++       PRKGFSV VQ
Sbjct: 1  MKFLKKIAGLLGLSKDESHESK--DEQVN------DAHRVVLDEHQTQHLPRKGFSVAVQ 60

Query: 61 VPVERPAVGPILVPCNG-NGGLQ 83
          VPVER   GP+L+P NG +GG+Q
Sbjct: 61 VPVERAQAGPVLLPTNGRDGGVQ 75

[Close]

BLAST of Spo11098.1 vs. TAIR (Arabidopsis)
Match: AT5G46620.1 (unknown protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.300e-9
Identity = 41/92 (44.57%), Postives = 48/92 (52.17%), Query Frame = 1


		  
Query: 1  MRFLKKVFGFLGFPKDEGHES----REEDDD-----VNTTNNSDDVHRNRMNVDPIHTGP 60
          M FLKK+ G LGF  ++G       R+ED D       T +   D  R         TGP
Sbjct: 1  MGFLKKLTGILGFGHNDGGGGHGAVRDEDGDGGDNNTGTVSGDGDKRREENQTRFRETGP 60

Query: 61 RKGFSVPVQVPVERPAVGPILVPCNG-NGGLQ 83
          RKGF VPVQV VER   GPIL PC   +GG+Q
Sbjct: 61 RKGFGVPVQVAVERSNPGPILQPCAALDGGVQ 92

[Close]

BLAST of Spo11098.1 vs. TAIR (Arabidopsis)
Match: AT4G17960.1 (unknown protein)

HSP 1 Score: 57.8 bits (138), Expect = 3.700e-9
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 1


		  
Query: 1  MRFLKKVFGFLGFPKDEGHESREEDDDVNTTNNSDDVHRNRMNVDPIHTG-PRKGFSVPV 60
          M F KK+ G  GF ++     + E+DD++   +  +  R R       TG PRKGF VPV
Sbjct: 1  MGFFKKLAGVFGFGQEV---LKNEEDDIDVYGDGGNQQRFR------ETGLPRKGFGVPV 60

Query: 61 QVPVERPAVGPILVPC-NGNGGLQ 83
          QV VER  +GP+L PC NG+GG+Q
Sbjct: 61 QVAVERSQLGPLLQPCANGDGGIQ 75

The following BLAST results are available for this feature:

BLAST of Spo11098.1 vs. NCBI nr
BLAST of Spo11098.1 vs. UniProtKB/TrEMBL
BLAST of Spo11098.1 vs. ExPASy Swiss-Prot
BLAST of Spo11098.1 vs. TAIR (Arabidopsis)

BLAST of Spo11098.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902240115\|gb\|KNA25885.1\|	2.9e-40	100.	hypothetical protein SOVF_0025...	[more]
gi\|731332533\|ref\|XP_010677256.1\|	4.2e-31	84.1	PREDICTED: uncharacterized pro...	[more]
gi\|703129293\|ref\|XP_010104329.1\|	2.6e-12	51.6	hypothetical protein L484_0232...	[more]
gi\|590675723\|ref\|XP_007039528.1\|	4.4e-12	48.1	Uncharacterized protein TCM_01...	[more]
gi\|743809805\|ref\|XP_011018589.1\|	4.9e-11	53.2	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo11098.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S2A9_SPIOL	2.0e-40	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8F6U9_BETVU	3.0e-31	84.1	Uncharacterized protein OS=Bet...	[more]
W9RN67_9ROSA	1.8e-12	51.6	Uncharacterized protein OS=Mor...	[more]
A0A061GAG1_THECC	3.1e-12	48.1	Uncharacterized protein OS=The...	[more]
A0A166F7Q7_DAUCA	1.3e-10	51.8	Uncharacterized protein OS=Dau...	[more]

BLAST of Spo11098.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo11098.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G46620.1	1.3e-9	44.5	unknown protein	[more]
AT4G17960.1	3.7e-9	44.0	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35750	FAMILY NOT NAMED	coord: 1..82 score: 1.8
None	No IPR available	PANTHER	PTHR35750:SF1	SUBFAMILY NOT NAMED	coord: 1..82 score: 1.8