Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCACGCAAAGACGGATTCCGAGGTCACGAGTTTATCGGCCTCATCCCCAAACCGATCGCCACCACGGCGGCCAGTTTACTACGTGCAGAGTCCATCACGGGACTCGCACGACGGCGAAAAGACAACCACATCATTTCAATCAACACCAGTGCTGAGTCCTGCCGGCTCTCCGCCGCATTCTCACTCTTCAGTGGGGCGCCATTCTAGGGAATCCTCCTCCACTCGATTCTCCGGTTCCCTCAAACCCGGAAGTGGGTCTCGCAAGATCTCCCCTAATGACGGCGGATCTGGCGGCGGTAGAAAGGGTGTTCAGAAGAAGAATCAGCAGCCATGGAAGGAGTGTGATGTTATTGAAGAAGAAGGGTTAATTGATGATGAGGAGAGACAGAAGCCTATGCCTCGCCGCTGTTATGTGCTGGCTTTCATTTTGGGTTTTTTTGTTTTGTTTTCTTTCTTCTCTTTGATCCTCTGGGGCGCTGCTCGCCCTCAGAAACCCAAGATCACCGTAAAGGTAATACATATTTTTGTTTGTTGTTGTTGTTGTTGTTGTTGTTGTCGTCGTCGTCCTTGTTGTTGATTGATTTATTTGTTGTTTGGACACAGAGCATAAAATTCGATAGATTCATAGTATCAGCTGGATCAGATGCTACGGGAGTCGCAACAGAAATGGCATCAGTGAACTCAACCCTTAAATTCATGTACCGCAACACGGCTACATTTTTCGGGGTCCATGTTACTTCATCTCCTTTAGATCTAGCTTATTCTCAAATAAACGTCGCCACCGGAAATGTAAGAATCAAACTAGATCCATATATTTGTCTATAGTTTTAGTTTAATTAACCAATTAAATAATTGAAATTTGTGTGATACAGTTGAAGAAATTCTACCAGTCCAGGAAGAGTCAGAGAACAATGAATGTGCAAATATATGGGGATAAAATTCCGCTGTATGGAAGTGGGCAGAGTTTAGCAGGTACATCAACCGGCGTACTGACAGCGCCAGTAAATATGACATTAAGCTTTACAGTTCGATCAAGAGCTTATGTATTGGGAAGATTGGTGAAACCCAAATTCTACAAGAAGGTTGATTGTACAGTTGTGTATGATCCTAAGAAGCCTAATTCTGCTATTTCCCTCAAGAAAGCGTGCACTTATCAATAATCATCCAAACTTGAGATGCTTTTAAACTTCTTTTTCTCCTATTTGGTTTATTTTTGGTTGCAACTTTACATAATAGAGTTATCAAATTATCAATCATCAATGTATCAAGGTATTGTGCAAATACTTAATTTTGGTTGTGACTTTAGATACAAGAGGGTAACTTTTTGCTCATTTTATCATTTTTAGACCGTTTAATACCTTCCCTACCATTTATATTTTGATAAATGAGTAAAAATTGTCCTGGCTATCTAATTCTAACCATTTTAGGTGTTCTAATCGAGAAGAATTTGGTCGGTGCTCTATAATGGCAAATTACTGGCAAGGGTTAGTTGGTGTCGGTGGGGAGCTTCTTTTTCTGTAGATCTGGGAGAACATTTTTATATAATATATATATATATTTTTTTATAATAATAGGTGTGAGTGTGTGACTCGAAGGAGTATTCTACTATAACATTTGTAAGACTTGTATCGTAATGTTAGTATATTCATTATATAAAACTTCGCATTATTTGAATGCTGAAAGGCAATAATTCATTTTGTCATGAAACATGTGCTATTGTGCTAGCTTAGCTGGTATTTTTAGTTTTGTTCGTAGTAAGTTGGTGAAGTATCAAACTAGTAACATAATTGAGCAATCAAAAAGACCAAATTATCTTTGATAAAGCTAGTTAATAATTTTCATTTACAAGGTTTTATAATGATGTATTACCTCTGTTTCGAAATAATATGGACACTTACGCATTTTACAACAACTAAGATAAATGATTGGAATGTAAGAAATAAGTATGGGAAAAGTGGAGTGTTGTAAGAAAAGAATAATAATAAAAAATTAGGTTGAGTGGAGTGGTG ATGCACGCAAAGACGGATTCCGAGGTCACGAGTTTATCGGCCTCATCCCCAAACCGATCGCCACCACGGCGGCCAGTTTACTACGTGCAGAGTCCATCACGGGACTCGCACGACGGCGAAAAGACAACCACATCATTTCAATCAACACCAGTGCTGAGTCCTGCCGGCTCTCCGCCGCATTCTCACTCTTCAGTGGGGCGCCATTCTAGGGAATCCTCCTCCACTCGATTCTCCGGTTCCCTCAAACCCGGAAGTGGGTCTCGCAAGATCTCCCCTAATGACGGCGGATCTGGCGGCGGTAGAAAGGGTGTTCAGAAGAAGAATCAGCAGCCATGGAAGGAGTGTGATGTTATTGAAGAAGAAGGGTTAATTGATGATGAGGAGAGACAGAAGCCTATGCCTCGCCGCTGTTATGTGCTGGCTTTCATTTTGGGTTTTTTTGTTTTGTTTTCTTTCTTCTCTTTGATCCTCTGGGGCGCTGCTCGCCCTCAGAAACCCAAGATCACCGTAAAGAGCATAAAATTCGATAGATTCATAGTATCAGCTGGATCAGATGCTACGGGAGTCGCAACAGAAATGGCATCAGTGAACTCAACCCTTAAATTCATGTACCGCAACACGGCTACATTTTTCGGGGTCCATGTTACTTCATCTCCTTTAGATCTAGCTTATTCTCAAATAAACGTCGCCACCGGAAATTTGAAGAAATTCTACCAGTCCAGGAAGAGTCAGAGAACAATGAATGTGCAAATATATGGGGATAAAATTCCGCTGTATGGAAGTGGGCAGAGTTTAGCAGGTACATCAACCGGCGTACTGACAGCGCCAGTAAATATGACATTAAGCTTTACAGTTCGATCAAGAGCTTATGTATTGGGAAGATTGGTGAAACCCAAATTCTACAAGAAGGTTGATTGTACAGTTGTGTATGATCCTAAGAAGCCTAATTCTGCTATTTCCCTCAAGAAAGCGTGCACTTATCAATAATCATCCAAACTTGAGATGCTTTTAAACTTCTTTTTCTCCTATTTGGTTTATTTTTGGTTGCAACTTTACATAATAGAGTTATCAAATTATCAATCATCAATGTATCAAGGTATTGTGCAAATACTTAATTTTGGTTGTGACTTTAGATACAAGAGGGTAACTTTTTGCTCATTTTATCATTTTTAGACCGTTTAATACCTTCCCTACCATTTATATTTTGATAAATGAGTAAAAATTGTCCTGGCTATCTAATTCTAACCATTTTAGGTGTTCTAATCGAGAAGAATTTGGTCGGTGCTCTATAATGGCAAATTACTGGCAAGGGTTAGTTGGTGTCGGTGGGGAGCTTCTTTTTCTGTAGATCTGGGAGAACATTTTTATATAATATATATATATATTTTTTTATAATAATAGGTGTGAGTGTGTGACTCGAAGGAGTATTCTACTATAACATTTGTAAGACTTGTATCGTAATGTTAGTATATTCATTATATAAAACTTCGCATTATTTGAATGCTGAAAGGCAATAATTCATTTTGTCATGAAACATGTGCTATTGTGCTAGCTTAGCTGGTATTTTTAGTTTTGTTCGTAGTAAGTTGGTGAAGTATCAAACTAGTAACATAATTGAGCAATCAAAAAGACCAAATTATCTTTGATAAAGCTAGTTAATAATTTTCATTTACAAGGTTTTATAATGATGTATTACCTCTGTTTCGAAATAATATGGACACTTACGCATTTTACAACAACTAAGATAAATGATTGGAATGTAAGAAATAAGTATGGGAAAAGTGGAGTGTTGTAAGAAAAGAATAATAATAAAAAATTAGGTTGAGTGGAGTGGTG ATGCACGCAAAGACGGATTCCGAGGTCACGAGTTTATCGGCCTCATCCCCAAACCGATCGCCACCACGGCGGCCAGTTTACTACGTGCAGAGTCCATCACGGGACTCGCACGACGGCGAAAAGACAACCACATCATTTCAATCAACACCAGTGCTGAGTCCTGCCGGCTCTCCGCCGCATTCTCACTCTTCAGTGGGGCGCCATTCTAGGGAATCCTCCTCCACTCGATTCTCCGGTTCCCTCAAACCCGGAAGTGGGTCTCGCAAGATCTCCCCTAATGACGGCGGATCTGGCGGCGGTAGAAAGGGTGTTCAGAAGAAGAATCAGCAGCCATGGAAGGAGTGTGATGTTATTGAAGAAGAAGGGTTAATTGATGATGAGGAGAGACAGAAGCCTATGCCTCGCCGCTGTTATGTGCTGGCTTTCATTTTGGGTTTTTTTGTTTTGTTTTCTTTCTTCTCTTTGATCCTCTGGGGCGCTGCTCGCCCTCAGAAACCCAAGATCACCGTAAAGAGCATAAAATTCGATAGATTCATAGTATCAGCTGGATCAGATGCTACGGGAGTCGCAACAGAAATGGCATCAGTGAACTCAACCCTTAAATTCATGTACCGCAACACGGCTACATTTTTCGGGGTCCATGTTACTTCATCTCCTTTAGATCTAGCTTATTCTCAAATAAACGTCGCCACCGGAAATTTGAAGAAATTCTACCAGTCCAGGAAGAGTCAGAGAACAATGAATGTGCAAATATATGGGGATAAAATTCCGCTGTATGGAAGTGGGCAGAGTTTAGCAGGTACATCAACCGGCGTACTGACAGCGCCAGTAAATATGACATTAAGCTTTACAGTTCGATCAAGAGCTTATGTATTGGGAAGATTGGTGAAACCCAAATTCTACAAGAAGGTTGATTGTACAGTTGTGTATGATCCTAAGAAGCCTAATTCTGCTATTTCCCTCAAGAAAGCGTGCACTTATCAATAA MHAKTDSEVTSLSASSPNRSPPRRPVYYVQSPSRDSHDGEKTTTSFQSTPVLSPAGSPPHSHSSVGRHSRESSSTRFSGSLKPGSGSRKISPNDGGSGGGRKGVQKKNQQPWKECDVIEEEGLIDDEERQKPMPRRCYVLAFILGFFVLFSFFSLILWGAARPQKPKITVKSIKFDRFIVSAGSDATGVATEMASVNSTLKFMYRNTATFFGVHVTSSPLDLAYSQINVATGNLKKFYQSRKSQRTMNVQIYGDKIPLYGSGQSLAGTSTGVLTAPVNMTLSFTVRSRAYVLGRLVKPKFYKKVDCTVVYDPKKPNSAISLKKACTYQ Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo11335.1 vs. NCBI nr
Match: gi|902226988|gb|KNA20544.1| (hypothetical protein SOVF_051290 [Spinacia oleracea]) HSP 1 Score: 640.6 bits (1651), Expect = 1.500e-180 Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 1
BLAST of Spo11335.1 vs. NCBI nr
Match: gi|731314882|ref|XP_010688841.1| (PREDICTED: uncharacterized protein LOC104902677 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 544.3 bits (1401), Expect = 1.500e-151 Identity = 279/328 (85.06%), Postives = 297/328 (90.55%), Query Frame = 1
BLAST of Spo11335.1 vs. NCBI nr
Match: gi|225458647|ref|XP_002284845.1| (PREDICTED: uncharacterized protein LOC100254049 [Vitis vinifera]) HSP 1 Score: 476.1 bits (1224), Expect = 5.000e-131 Identity = 244/328 (74.39%), Postives = 284/328 (86.59%), Query Frame = 1
BLAST of Spo11335.1 vs. NCBI nr
Match: gi|661895515|emb|CDP01320.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 471.1 bits (1211), Expect = 1.600e-129 Identity = 235/327 (71.87%), Postives = 280/327 (85.63%), Query Frame = 1
BLAST of Spo11335.1 vs. NCBI nr
Match: gi|823165675|ref|XP_012482743.1| (PREDICTED: uncharacterized protein LOC105797320 [Gossypium raimondii]) HSP 1 Score: 468.4 bits (1204), Expect = 1.000e-128 Identity = 238/327 (72.78%), Postives = 283/327 (86.54%), Query Frame = 1
BLAST of Spo11335.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNP6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_051290 PE=4 SV=1) HSP 1 Score: 640.6 bits (1651), Expect = 1.100e-180 Identity = 328/328 (100.00%), Postives = 328/328 (100.00%), Query Frame = 1
BLAST of Spo11335.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CZE4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g015870 PE=4 SV=1) HSP 1 Score: 544.3 bits (1401), Expect = 1.000e-151 Identity = 279/328 (85.06%), Postives = 297/328 (90.55%), Query Frame = 1
BLAST of Spo11335.1 vs. UniProtKB/TrEMBL
Match: F6H1C5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g10360 PE=4 SV=1) HSP 1 Score: 476.1 bits (1224), Expect = 3.500e-131 Identity = 244/328 (74.39%), Postives = 284/328 (86.59%), Query Frame = 1
BLAST of Spo11335.1 vs. UniProtKB/TrEMBL
Match: A0A068TYF2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00034920001 PE=4 SV=1) HSP 1 Score: 471.1 bits (1211), Expect = 1.100e-129 Identity = 235/327 (71.87%), Postives = 280/327 (85.63%), Query Frame = 1
BLAST of Spo11335.1 vs. UniProtKB/TrEMBL
Match: A0A0D2RCB7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G101900 PE=4 SV=1) HSP 1 Score: 468.4 bits (1204), Expect = 7.200e-129 Identity = 238/327 (72.78%), Postives = 283/327 (86.54%), Query Frame = 1
BLAST of Spo11335.1 vs. TAIR (Arabidopsis)
Match: AT1G45688.1 (unknown protein) HSP 1 Score: 409.5 bits (1051), Expect = 2.000e-114 Identity = 218/346 (63.01%), Postives = 262/346 (75.72%), Query Frame = 1
BLAST of Spo11335.1 vs. TAIR (Arabidopsis)
Match: AT5G42860.1 (unknown protein) HSP 1 Score: 339.0 bits (868), Expect = 3.300e-93 Identity = 195/347 (56.20%), Postives = 242/347 (69.74%), Query Frame = 1
BLAST of Spo11335.1 vs. TAIR (Arabidopsis)
Match: AT2G41990.1 (Late embryogenesis abundant protein, group 2 (InterPro:IPR004864)) HSP 1 Score: 171.8 bits (434), Expect = 7.100e-43 Identity = 127/333 (38.14%), Postives = 181/333 (54.35%), Query Frame = 1
BLAST of Spo11335.1 vs. TAIR (Arabidopsis)
Match: AT4G35170.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) HSP 1 Score: 162.5 bits (410), Expect = 4.300e-40 Identity = 113/318 (35.53%), Postives = 173/318 (54.40%), Query Frame = 1
BLAST of Spo11335.1 vs. TAIR (Arabidopsis)
Match: AT3G24600.1 (Late embryogenesis abundant protein, group 2) HSP 1 Score: 139.8 bits (351), Expect = 3.000e-33 Identity = 87/242 (35.95%), Postives = 127/242 (52.48%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo11335.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo11335.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo11335.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo11335.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
|