Spo11445.1 (mRNA) | SpinachBase

Overview


Name	Spo11445.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Ribosomal L18p/L5e family protein
Location	SpoScf_00676 : 167295 .. 169918 (-)
Sequence length	938

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGTCTAACCATTTATAAACCCAACAACTTTATCTACAGAAGCTTTAGAAATTAGAACAAACTGCAGCAAATGACACTTCTCCCGAGTCTCGTATGAGTATACGTATATTGCAACTTCATCTCTGGTTAGTGTATTTTCTCTCTCTTACTTGTTCATTTTCTGTTTTCTTTCTTTAATCTTATACTGAACTAATGTTTCTGTTATCGAAATACTGTAATTTGTTCCCAATTTAGACCAATTTTGCGTTTTAATTCTATTGCTTATCATGTTCAGTCAGTTCATTGATAAATTAATTGAAAGAAACTGAAGTAATTATAGTTTTGGATGATTTCCTGCTCATTTGGGGGAGGGGGAAGTAAGTTTTAATTTGAGTGAATTTTATTTTCGGTAGAAATACTTGAATCAAAATCTGTATTGAAATTACAGGAATTTCCTATAAATCTGAAAGAGGATGGCTTGTAGTATATCGGCTAGTACATTTCTCATATCTTCAGACTTTTTTCGACCTCGAATCAACAAACCCACTTCGTTATCATGGTCTTCTTCCATGCCTCAATTGAATCTCTCACTCAATTCCAGAACTAATTTGTCAAATTCCACTCCCAAACAGGTACTATTTACTGCTTCATTGTCCAACATTTATGTATGCGTCGTCTTTTATCGGAGTATTACTTTCGTCTAGATTTGGTTGTCAAATTGATTCCGGACGAAGGGAGTATGTTTACCCATCTGTTGTGCTTCGGTTTCTACTTTCAATTTAAAATGCTGTGTTGGGACTATTGAAATTGATAGTTAGTGCTTGCTACATTTTGTGTCAAAATAATTGGCAACATTTGAAATTTGGGGATAAAAGTGCCGCGTTCTATTCACCTGATTTCCAATTATTTTTCCTGAAGTTATCTTATCTGAACTTATCTGAACTTGTCTAAACTTATTAGAACTTATCAAAACTTATTTTAGTTATAAATTGTATTTGGCCAACCTTATTTTTCCTGAACTTATCTTATCTGAACTTATCTGAACTTGACTGAACTTATCTGAACTTATTTTTCCTGAAATAAGTGGAAATAAGGTGAACAGAACAAGCTATTTTTGATGTGAAATTGTGAAGTATTTCGTTTAGGAAGTAAATTATTATGAGATTATCATTATACGGTTTTTATCATGATATGAATTAAGCAGTAACAACATTTATAAGATTGGACAACAAAAATTAAATGTGGCTTCTTGTATAAAGACGAGGAAGTATTTCAAGAAGTATGTTTGACAATGTTGTGTACAATTTCATTGTACTTGTTGCCTTTGTTGGTCTAAAACGATATATATTGTGTCACACGAAATGAGATCACGTTTCTTCATCCATCCAAGCATGCTTCATTGCTCCATATGAAACTCTTAGGAGGAGGCTTGTCATTTTGATTCTTTTGCAATATAGGTACTCTGTTGGCTTTTCTGCAGTCATCATTCAGGTGGTTGTGCAATGTGTCTGGTTGAGATGGTTGTGCTAGTCTAGTTGTGAAAAAAGTGAGCTTATTACTATTGTGTTTAGGCGAAAGCAATGTTCTTTCTTTCCACACTTCATGTGAGATATGATCATCTTTTGATGTCAATGATAAGTACAACTGTTTGTACTTGTATGTAATTAAATCAGAATGACCAATTTGGTGCATTACTCTCTAATAGCAAAAATTTAAACAATCATGGCTAAATGAAAAAAAAGTCCTTTTGCCTAGTTCTTTAGGGAACATTACGGGGAGTGAAATGCCTTATATACCTTTAAGGAGTAGCTGTGGTCGGAGACTTGGAGTTGGGGTAGAGCTCTGTTGATATTGCACATCTTTGCACCGTGCTATTAGCCAGACTGAAATGTATTTAGGAGTCGAATAGATGGTTTAGCTGGGATCGATATATTCTTATGCGCATTAGTCTATACATCGAAAGCCATGTCTGTTGCAATTGTACTGGCTGATCTGAATTTGAGTTTATACATGTAGGACTTTGTTGTTCAAGCAGCCTGGACCAGGAGATCTCGAGGAGAACCAAAGAAAAGCGGAAGGAAATCATGGAAACAACGGACTGATATGTACTTGAGACCTTTTCTGCTGAATGTTTACTTCTCAAAGAGGTTCATACAAGCCAAAGTGATGCACCGTGGAACCAGCAAAGTGATATCTGTTGCCACCACAAATTCTAAGGATTTAAGAACTACCTTGCCATCTCTTCTTGATACTAATGCTTGTAGAGTCATGGGCAAGCTAATAGCTGAACGATCAAAAGAAGCCGATGTATATGCCATGGCCTATGAGCCTAGGAAAGATGAGCGGATTGAGGGTAAACTTGGTATTATCCTGGATACCATCAAAGAAAACGGGATCATTTTTGTAGACTAATTTTACCACATTTTCTAGCTATGGTGTTGTCTGAAATTATGAGCTTAATCTTTTCTTAATCATATTTTACATGTTTCAATCACAACATGAGTTTAATCTTTTCTTAATCTGACTTCAATTTCGGGCAAACATATTTTCTTAATCATATTATTGGAATGTGACTTGTTTTAGGGACGAAGTAGTCTCGGTAATGGATACTGATCAATTAGTGAAGTTGAGAAATAAAAGAGGC

mRNA sequence

GCAGTCTAACCATTTATAAACCCAACAACTTTATCTACAGAAGCTTTAGAAATTAGAACAAACTGCAGCAAATGACACTTCTCCCGAGTCTCGTATGAGTATACGTATATTGCAACTTCATCTCTGGAATTTCCTATAAATCTGAAAGAGGATGGCTTGTAGTATATCGGCTAGTACATTTCTCATATCTTCAGACTTTTTTCGACCTCGAATCAACAAACCCACTTCGTTATCATGGTCTTCTTCCATGCCTCAATTGAATCTCTCACTCAATTCCAGAACTAATTTGTCAAATTCCACTCCCAAACAGGACTTTGTTGTTCAAGCAGCCTGGACCAGGAGATCTCGAGGAGAACCAAAGAAAAGCGGAAGGAAATCATGGAAACAACGGACTGATATGTACTTGAGACCTTTTCTGCTGAATGTTTACTTCTCAAAGAGGTTCATACAAGCCAAAGTGATGCACCGTGGAACCAGCAAAGTGATATCTGTTGCCACCACAAATTCTAAGGATTTAAGAACTACCTTGCCATCTCTTCTTGATACTAATGCTTGTAGAGTCATGGGCAAGCTAATAGCTGAACGATCAAAAGAAGCCGATGTATATGCCATGGCCTATGAGCCTAGGAAAGATGAGCGGATTGAGGGTAAACTTGGTATTATCCTGGATACCATCAAAGAAAACGGGATCATTTTTGTAGACTAATTTTACCACATTTTCTAGCTATGGTGTTGTCTGAAATTATGAGCTTAATCTTTTCTTAATCATATTTTACATGTTTCAATCACAACATGAGTTTAATCTTTTCTTAATCTGACTTCAATTTCGGGCAAACATATTTTCTTAATCATATTATTGGAATGTGACTTGTTTTAGGGACGAAGTAGTCTCGGTAATGGATACTGATCAATTAGTGAAGTTGAGAAATAAAAGAGGC

Coding sequence (CDS)

ATGGCTTGTAGTATATCGGCTAGTACATTTCTCATATCTTCAGACTTTTTTCGACCTCGAATCAACAAACCCACTTCGTTATCATGGTCTTCTTCCATGCCTCAATTGAATCTCTCACTCAATTCCAGAACTAATTTGTCAAATTCCACTCCCAAACAGGACTTTGTTGTTCAAGCAGCCTGGACCAGGAGATCTCGAGGAGAACCAAAGAAAAGCGGAAGGAAATCATGGAAACAACGGACTGATATGTACTTGAGACCTTTTCTGCTGAATGTTTACTTCTCAAAGAGGTTCATACAAGCCAAAGTGATGCACCGTGGAACCAGCAAAGTGATATCTGTTGCCACCACAAATTCTAAGGATTTAAGAACTACCTTGCCATCTCTTCTTGATACTAATGCTTGTAGAGTCATGGGCAAGCTAATAGCTGAACGATCAAAAGAAGCCGATGTATATGCCATGGCCTATGAGCCTAGGAAAGATGAGCGGATTGAGGGTAAACTTGGTATTATCCTGGATACCATCAAAGAAAACGGGATCATTTTTGTAGACTAA

Protein sequence

MACSISASTFLISSDFFRPRINKPTSLSWSSSMPQLNLSLNSRTNLSNSTPKQDFVVQAAWTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGIIFVD

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo11445	Spo11445	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo11445.1	Spo11445.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11445.1.utr5p.2	Spo11445.1.utr5p.2	five_prime_UTR
Spo11445.1.utr5p.1	Spo11445.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11445.1.CDS.2	Spo11445.1.CDS.2	CDS
Spo11445.1.CDS.1	Spo11445.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11445.1.utr3p.1	Spo11445.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11445.1.exon.3	Spo11445.1.exon.3	exon
Spo11445.1.exon.2	Spo11445.1.exon.2	exon
Spo11445.1.exon.1	Spo11445.1.exon.1	exon

Homology

[Close]

BLAST of Spo11445.1 vs. NCBI nr
Match: gi|731360735|ref|XP_010691979.1| (PREDICTED: uncharacterized protein LOC104905219 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 325.9 bits (834), Expect = 4.700e-86
Identity = 163/184 (88.59%), Postives = 177/184 (96.20%), Query Frame = 1


		  
Query: 1   MACSISASTFLISSDFFRPRINKPTSLSWSSSMPQLNLSLNSRTNLSNSTPKQDFVVQAA 60
           M+CSIS+S FL+SSD FRPR+NKPTSLSWSSS+PQLNLSLNSRTNLSNST +QDFVVQAA
Sbjct: 1   MSCSISSSAFLVSSDLFRPRLNKPTSLSWSSSLPQLNLSLNSRTNLSNSTTRQDFVVQAA 60

Query: 61  WTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSK 120
           WTRRSRGEPKKSGRKSWKQRTDMY+RPFLLNVYFSKRF+ AKVMHRGTSKVISVATTN+K
Sbjct: 61  WTRRSRGEPKKSGRKSWKQRTDMYMRPFLLNVYFSKRFVHAKVMHRGTSKVISVATTNAK 120

Query: 121 DLRTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGI 180
           DLRTTLPSL+D NACRV+GKLIAERS EADVYA+AYEPRK ERIEGKLGI+LDTIKE+GI
Sbjct: 121 DLRTTLPSLIDNNACRVVGKLIAERSIEADVYALAYEPRKGERIEGKLGIVLDTIKEHGI 180

Query: 181 IFVD 185
           IFVD
Sbjct: 181 IFVD 184

[Close]

BLAST of Spo11445.1 vs. NCBI nr
Match: gi|902235770|gb|KNA24073.1| (hypothetical protein SOVF_018290 [Spinacia oleracea])

HSP 1 Score: 297.0 bits (759), Expect = 2.300e-77
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1


		  
Query: 33  MPQLNLSLNSRTNLSNSTPKQDFVVQAAWTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNV 92
           MPQLNLSLNSRTNLSNSTPKQDFVVQAAWTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNV
Sbjct: 1   MPQLNLSLNSRTNLSNSTPKQDFVVQAAWTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNV 60

Query: 93  YFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVY 152
           YFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVY
Sbjct: 61  YFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVY 120

Query: 153 AMAYEPRKDERIEGKLGIILDTIKENGIIFVD 185
           AMAYEPRKDERIEGKLGIILDTIKENGIIFVD
Sbjct: 121 AMAYEPRKDERIEGKLGIILDTIKENGIIFVD 152

[Close]

BLAST of Spo11445.1 vs. NCBI nr
Match: gi|297744840|emb|CBI38108.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 249.6 bits (636), Expect = 4.200e-63
Identity = 135/181 (74.59%), Postives = 150/181 (82.87%), Query Frame = 1


		  
Query: 4   SISASTFLISSDFFRPRINKPTSLSWSSSMPQLNLSLNSRTNLSNSTPKQDFVVQAAWTR 63
           SIS+S  L S+D F+ R  KPTSLSWSSS P +N+  NS TN S  +  +  VVQAAWTR
Sbjct: 17  SISSSPCLFSTDLFQSRSLKPTSLSWSSSFPNINIFTNSITNPSLPSLNKCLVVQAAWTR 76

Query: 64  RSRGEP-KKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDL 123
           RSR E  K+  RKSWKQ+TDMY+RPFLLNV+FSKRFI AKVMHR TSKVISVATTNSKDL
Sbjct: 77  RSRSEAAKRPSRKSWKQKTDMYMRPFLLNVFFSKRFIHAKVMHRPTSKVISVATTNSKDL 136

Query: 124 RTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGIIF 183
           R TL SL D NACRV+GKLIAERS EADV+AM+YEPRKDERIEGKLGI+LDTIKENGIIF
Sbjct: 137 RNTLSSLTDHNACRVIGKLIAERSMEADVFAMSYEPRKDERIEGKLGIVLDTIKENGIIF 196

[Close]

BLAST of Spo11445.1 vs. NCBI nr
Match: gi|225454046|ref|XP_002263231.1| (PREDICTED: uncharacterized protein LOC100246602 [Vitis vinifera])

HSP 1 Score: 249.6 bits (636), Expect = 4.200e-63
Identity = 135/181 (74.59%), Postives = 150/181 (82.87%), Query Frame = 1


		  
Query: 4   SISASTFLISSDFFRPRINKPTSLSWSSSMPQLNLSLNSRTNLSNSTPKQDFVVQAAWTR 63
           SIS+S  L S+D F+ R  KPTSLSWSSS P +N+  NS TN S  +  +  VVQAAWTR
Sbjct: 3   SISSSPCLFSTDLFQSRSLKPTSLSWSSSFPNINIFTNSITNPSLPSLNKCLVVQAAWTR 62

Query: 64  RSRGEP-KKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDL 123
           RSR E  K+  RKSWKQ+TDMY+RPFLLNV+FSKRFI AKVMHR TSKVISVATTNSKDL
Sbjct: 63  RSRSEAAKRPSRKSWKQKTDMYMRPFLLNVFFSKRFIHAKVMHRPTSKVISVATTNSKDL 122

Query: 124 RTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGIIF 183
           R TL SL D NACRV+GKLIAERS EADV+AM+YEPRKDERIEGKLGI+LDTIKENGIIF
Sbjct: 123 RNTLSSLTDHNACRVIGKLIAERSMEADVFAMSYEPRKDERIEGKLGIVLDTIKENGIIF 182

[Close]

BLAST of Spo11445.1 vs. NCBI nr
Match: gi|1000938867|ref|XP_015583493.1| (PREDICTED: 50S ribosomal protein L18 isoform X1 [Ricinus communis])

HSP 1 Score: 240.7 bits (613), Expect = 2.000e-60
Identity = 131/185 (70.81%), Postives = 150/185 (81.08%), Query Frame = 1


		  
Query: 2   ACSISA--STFLISSDFFRPRINKPTSLSWSSSMPQLNLSLNSRTNLSNSTPKQDFVVQA 61
           ACS +A   +  IS+D    R ++P SLSW SS P  N+S N+ +    S  K  F +QA
Sbjct: 11  ACSAAALSGSLTISTDSLSTRSSRPNSLSWVSSFPTFNISTNTTSPSLPSLNKNSF-IQA 70

Query: 62  AWTRRSRGE-PKKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTN 121
           AWTRRSRGE  K+  RKSWKQRTDMY+RPFLLNV+FSKRFI AKVMHRGTSKVISVATTN
Sbjct: 71  AWTRRSRGELAKRPNRKSWKQRTDMYMRPFLLNVFFSKRFIHAKVMHRGTSKVISVATTN 130

Query: 122 SKDLRTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKEN 181
           +KDLR TLPSL D +ACRV+G+LIAERSKEADVYA+AYEPRK+ERIEGKLGI+LDTIKEN
Sbjct: 131 AKDLRNTLPSLTDHDACRVVGRLIAERSKEADVYAIAYEPRKNERIEGKLGIVLDTIKEN 190

Query: 182 GIIFV 184
           GIIFV
Sbjct: 191 GIIFV 194

[Close]

BLAST of Spo11445.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BIF9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g017190 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 3.200e-86
Identity = 163/184 (88.59%), Postives = 177/184 (96.20%), Query Frame = 1


		  
Query: 1   MACSISASTFLISSDFFRPRINKPTSLSWSSSMPQLNLSLNSRTNLSNSTPKQDFVVQAA 60
           M+CSIS+S FL+SSD FRPR+NKPTSLSWSSS+PQLNLSLNSRTNLSNST +QDFVVQAA
Sbjct: 1   MSCSISSSAFLVSSDLFRPRLNKPTSLSWSSSLPQLNLSLNSRTNLSNSTTRQDFVVQAA 60

Query: 61  WTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSK 120
           WTRRSRGEPKKSGRKSWKQRTDMY+RPFLLNVYFSKRF+ AKVMHRGTSKVISVATTN+K
Sbjct: 61  WTRRSRGEPKKSGRKSWKQRTDMYMRPFLLNVYFSKRFVHAKVMHRGTSKVISVATTNAK 120

Query: 121 DLRTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGI 180
           DLRTTLPSL+D NACRV+GKLIAERS EADVYA+AYEPRK ERIEGKLGI+LDTIKE+GI
Sbjct: 121 DLRTTLPSLIDNNACRVVGKLIAERSIEADVYALAYEPRKGERIEGKLGIVLDTIKEHGI 180

Query: 181 IFVD 185
           IFVD
Sbjct: 181 IFVD 184

[Close]

BLAST of Spo11445.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RX83_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_018290 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.600e-77
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1


		  
Query: 33  MPQLNLSLNSRTNLSNSTPKQDFVVQAAWTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNV 92
           MPQLNLSLNSRTNLSNSTPKQDFVVQAAWTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNV
Sbjct: 1   MPQLNLSLNSRTNLSNSTPKQDFVVQAAWTRRSRGEPKKSGRKSWKQRTDMYLRPFLLNV 60

Query: 93  YFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVY 152
           YFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVY
Sbjct: 61  YFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVY 120

Query: 153 AMAYEPRKDERIEGKLGIILDTIKENGIIFVD 185
           AMAYEPRKDERIEGKLGIILDTIKENGIIFVD
Sbjct: 121 AMAYEPRKDERIEGKLGIILDTIKENGIIFVD 152

[Close]

BLAST of Spo11445.1 vs. UniProtKB/TrEMBL
Match: F6I1H6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0045g01340 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 3.000e-63
Identity = 135/181 (74.59%), Postives = 150/181 (82.87%), Query Frame = 1


		  
Query: 4   SISASTFLISSDFFRPRINKPTSLSWSSSMPQLNLSLNSRTNLSNSTPKQDFVVQAAWTR 63
           SIS+S  L S+D F+ R  KPTSLSWSSS P +N+  NS TN S  +  +  VVQAAWTR
Sbjct: 3   SISSSPCLFSTDLFQSRSLKPTSLSWSSSFPNINIFTNSITNPSLPSLNKCLVVQAAWTR 62

Query: 64  RSRGEP-KKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDL 123
           RSR E  K+  RKSWKQ+TDMY+RPFLLNV+FSKRFI AKVMHR TSKVISVATTNSKDL
Sbjct: 63  RSRSEAAKRPSRKSWKQKTDMYMRPFLLNVFFSKRFIHAKVMHRPTSKVISVATTNSKDL 122

Query: 124 RTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGIIF 183
           R TL SL D NACRV+GKLIAERS EADV+AM+YEPRKDERIEGKLGI+LDTIKENGIIF
Sbjct: 123 RNTLSSLTDHNACRVIGKLIAERSMEADVFAMSYEPRKDERIEGKLGIVLDTIKENGIIF 182

[Close]

BLAST of Spo11445.1 vs. UniProtKB/TrEMBL
Match: A0A068ULF3_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028699001 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 3.100e-60
Identity = 128/178 (71.91%), Postives = 147/178 (82.58%), Query Frame = 1


		  
Query: 9   TFLISSDFFRPRINKPTSLSWSSSMPQLNLSLNSRTNLS--NSTPKQDFVVQAAWTRRSR 68
           +F ++S F       P SLSWSSS+P+LNLS+ + +  S  N   KQ FVV+AAWTRRSR
Sbjct: 12  SFTLASQFISTGKENPASLSWSSSLPKLNLSITTTSPSSPLNLLHKQTFVVEAAWTRRSR 71

Query: 69  GEP-KKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDLRTT 128
            E  KK  RKSWKQRTDMY+RPFLLNV+FSKRFI AKVMHRGTSKVISVATTN+KDLR T
Sbjct: 72  SEAAKKPNRKSWKQRTDMYMRPFLLNVFFSKRFIHAKVMHRGTSKVISVATTNAKDLRNT 131

Query: 129 LPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGIIFV 184
           LPSL D NACRV+GKLIAERSKEADV+A+AYEP K++RIEG+L IILDTI+ENGIIFV
Sbjct: 132 LPSLTDNNACRVIGKLIAERSKEADVFAIAYEPDKNQRIEGRLAIILDTIQENGIIFV 189

[Close]

BLAST of Spo11445.1 vs. UniProtKB/TrEMBL
Match: U5FXQ5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11310g PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.400e-59
Identity = 131/192 (68.23%), Postives = 154/192 (80.21%), Query Frame = 1


		  
Query: 1   MACSISASTFL-----ISSDFF---RPRINKPTSLSWSSSMPQLNLSLNSRTNLSNSTPK 60
           MAC IS+S  L     +S+D       R  KP S+SW SS P +N+S+N   N  +S  K
Sbjct: 1   MACIISSSAALSTRSLLSTDSIPTQSSRSIKPNSISWVSSFPTINISIN---NNPSSLNK 60

Query: 61  QDFVVQAAWTRRSRGE-PKKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKV 120
             F+ QAAWTRRSRGE  KK  +KSWKQRT+MY++PFLLNV+FS++FIQAKVMHRGTSKV
Sbjct: 61  NSFI-QAAWTRRSRGELEKKPNKKSWKQRTEMYMKPFLLNVFFSRKFIQAKVMHRGTSKV 120

Query: 121 ISVATTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGII 180
           ISVATTN+KDLR +LPSL D NACR++GKLIAERSKEADVYAM+YEPRKDERIEGKLGI+
Sbjct: 121 ISVATTNAKDLRHSLPSLTDHNACRIVGKLIAERSKEADVYAMSYEPRKDERIEGKLGIV 180

Query: 181 LDTIKENGIIFV 184
           +DTIKENGIIFV
Sbjct: 181 IDTIKENGIIFV 188

[Close]

BLAST of Spo11445.1 vs. ExPASy Swiss-Prot
Match: RL18_AROAE (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) GN=rplR PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.100e-6
Identity = 33/98 (33.67%), Postives = 59/98 (60.20%), Query Frame = 1


		  
Query: 85  LRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIAE 144
           L+   L V+ +   I A+V+    S+V++ A+T   D+R+ LP+  +  A +V+GKLIAE
Sbjct: 21  LKSVRLTVFRTNSHIYAQVIDGSGSRVLAAASTVEADVRSQLPNGGNKQAAQVVGKLIAE 80

Query: 145 RSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGIIF 183
           R+K A V A+A++ R   +  G++  + +  +E G+ F
Sbjct: 81  RAKAAGVEAVAFD-RAGFQYHGRVKALAEAAREGGLKF 117

[Close]

BLAST of Spo11445.1 vs. TAIR (Arabidopsis)
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 222.6 bits (566), Expect = 2.000e-58
Identity = 120/188 (63.83%), Postives = 149/188 (79.26%), Query Frame = 1


		  
Query: 1   MACSISASTFLISSDFFRPRINKPTSL----SWSSSMPQLNLSLNSRTNLSNSTPKQDFV 60
           M+C IS++  L+  D    R N+ T L    SW SS P+L++ + S   +S+   K+D  
Sbjct: 1   MSCLISSTCSLVPFDSNLTRSNRFTKLGSAVSWQSSFPKLSIEIGSV--ISSPIVKKDSF 60

Query: 61  VQAAWTRRSRGEP-KKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVA 120
           VQAAWTRRSRGE  K+  RKSWKQRTDMY+RPFLLNV+FS++FI AKVMHR TSKVISVA
Sbjct: 61  VQAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVA 120

Query: 121 TTNSKDLRTTLPSLLDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTI 180
           TTN++D+RT +PSL+D  ACR++GKLIAERS EADVYA++YEPRK ERIEGKLGI++DTI
Sbjct: 121 TTNARDIRTNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTI 180

Query: 181 KENGIIFV 184
           KE+GIIFV
Sbjct: 181 KEHGIIFV 186

[Close]

BLAST of Spo11445.1 vs. TAIR (Arabidopsis)
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 104.4 bits (259), Expect = 7.800e-23
Identity = 48/105 (45.71%), Postives = 74/105 (70.48%), Query Frame = 1


		  
Query: 76  SWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNAC 135
           S+KQRT  Y+ PF L+V+ SKRF+ A + HR T + ++VA TNSKD++  L S  D  AC
Sbjct: 123 SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPAC 182

Query: 136 RVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGI 181
             +G++++ER+KEADVY  +Y PR  ++ EGK+  ++ ++ +NGI
Sbjct: 183 MSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of Spo11445.1 vs. TAIR (Arabidopsis)
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 87.4 bits (215), Expect = 9.800e-18
Identity = 44/111 (39.64%), Postives = 73/111 (65.77%), Query Frame = 1


		  
Query: 70  KKSGRKSWKQRTDMYLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSL 129
           K+    ++ Q T  +  PF L++Y SK  ++A V+HR TSKV++VA + SKD++  L S 
Sbjct: 180 KRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSR 239

Query: 130 LDTNACRVMGKLIAERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGI 181
            +  AC  +G ++A+RS E D++ + Y PRK ++IEGKL ++L  + +NG+
Sbjct: 240 RNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGV 290

[Close]

BLAST of Spo11445.1 vs. TAIR (Arabidopsis)
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.600e-12
Identity = 31/97 (31.96%), Postives = 61/97 (62.89%), Query Frame = 1


		  
Query: 84  YLRPFLLNVYFSKRFIQAKVMHRGTSKVISVATTNSKDLRTTLPSLLDTNACRVMGKLIA 143
           YL+P++L ++F+ +F+ A+V+H  T+ V   A++  K LR T+    D  A   +GK++ 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 144 ERSKEADVYAMAYEPRKDERIEGKLGIILDTIKENGI 181
           ER    D+ A+  + +K++R  GK+  ++D+++E G+
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

The following BLAST results are available for this feature:

BLAST of Spo11445.1 vs. NCBI nr
BLAST of Spo11445.1 vs. UniProtKB/TrEMBL
BLAST of Spo11445.1 vs. ExPASy Swiss-Prot
BLAST of Spo11445.1 vs. TAIR (Arabidopsis)

BLAST of Spo11445.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|731360735\|ref\|XP_010691979.1\|	4.7e-86	88.5	PREDICTED: uncharacterized pro...	[more]
gi\|902235770\|gb\|KNA24073.1\|	2.3e-77	100.	hypothetical protein SOVF_0182...	[more]
gi\|297744840\|emb\|CBI38108.3\|	4.2e-63	74.5	unnamed protein product [Vitis...	[more]
gi\|225454046\|ref\|XP_002263231.1\|	4.2e-63	74.5	PREDICTED: uncharacterized pro...	[more]
gi\|1000938867\|ref\|XP_015583493.1\|	2.0e-60	70.8	PREDICTED: 50S ribosomal prote...	[more]

BLAST of Spo11445.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8BIF9_BETVU	3.2e-86	88.5	Uncharacterized protein OS=Bet...	[more]
A0A0K9RX83_SPIOL	1.6e-77	100.	Uncharacterized protein OS=Spi...	[more]
F6I1H6_VITVI	3.0e-63	74.5	Putative uncharacterized prote...	[more]
A0A068ULF3_COFCA	3.1e-60	71.9	Uncharacterized protein OS=Cof...	[more]
U5FXQ5_POPTR	4.4e-59	68.2	Uncharacterized protein OS=Pop...	[more]

BLAST of Spo11445.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
RL18_AROAE	2.1e-6	33.6	50S ribosomal protein L18 OS=A...	[more]

BLAST of Spo11445.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4


Match Name	E-value	Identity	Description
AT3G20230.1	2.0e-58	63.8	Ribosomal L18p/L5e family prot...	[more]
AT1G08845.2	7.8e-23	45.7	Ribosomal L18p/L5e family prot...	[more]
AT3G22450.1	9.8e-18	39.6	Ribosomal L18p/L5e family prot...	[more]
AT5G27820.1	1.6e-12	31.9	Ribosomal L18p/L5e family prot...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 86..182 score: 3.
None	No IPR available	GENE3D	3.30.420.100		coord: 87..182 score: 2.1
None	No IPR available	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 13..184 score: 3.3E
None	No IPR available	PANTHER	PTHR12899:SF7	SUBFAMILY NOT NAMED	coord: 13..184 score: 3.3E
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 84..180 score: 8.9

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome