Spo11480.1 (mRNA) | SpinachBase

Overview


Name	Spo11480.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Mitochondrial transcription termination factor family protein
Location	chr5 : 37225377 .. 37226294 (-)
Sequence length	918

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGCAGTAGCATCAGCACTTCATTCTTCACTCTGTTTCTCACCTCCATTAATCCCGCCTTCGAACCCGAACTTCGATCAATTACAACAACCAACCCCCAAACCCCAAAGCATCCTTATTAACAACCCTCTCTACACCCAAACTCATCCCAATATTTCCCTCCAATTTAAAGAAAAGATCCTCTGTCTCGAAATCCTCGGTATTGATTCTGGTAAGGCGCTCGCTCTTAACCCTTCTCTCCACTCGACTTCCCTTGATTCTATCCATTCCATCATATCATACCTTCAGTCTAAGGGCATTTACCAAAAGGACTTGCCCAAGATTTTTGGGATGTGTCCTCAACTTCTTACCTCCAACATTAAATCCCAACTCAACCCGGTTTTCGATTTCCTGTCTTTTCATCTTGGGGTTCCTGAACATCATTTTCGGAAAGTGATCAACAAATGTCCAAGACTTTTAGTTTCAAGTGTTAGTGATCAACTTAAGCCTGCTCTTTATTATCTTAAAAGACTCGGCTTTCAAAACTATGAGGCCTTGGCTTATCAGGATCCAATCTTGTTGGTGTCAAACGTGGAGAAGACATTGATTCCAAAACTTGAGTATTTGATTGGATTGGGTTTTACTAGAAAAGAAGCAGTTGGTATGGTTTTAAGGTGTCCTGCTTTGTTTACTTTTAGTATTGACAACAATTATAAGCCTAAACTTGGGTATTTTCTTGAGGAAATCAAAGGTACATTGGAGGAATTGAAGGAATTTCCTCAGTATTTTGCTTTTAGTTTGGACAAGAGGATTAAGCCAAGGCATTTAGAAGTTTTGGAGATTGGATTAAAGATTCCTCTATCACTTATGCTCAAGGCTACTGATGAAGAATTTAATGATTTGATAAGGCAAGGAAACAAGGCGGAAATCTTATGA

mRNA sequence

ATGAGAGCAGTAGCATCAGCACTTCATTCTTCACTCTGTTTCTCACCTCCATTAATCCCGCCTTCGAACCCGAACTTCGATCAATTACAACAACCAACCCCCAAACCCCAAAGCATCCTTATTAACAACCCTCTCTACACCCAAACTCATCCCAATATTTCCCTCCAATTTAAAGAAAAGATCCTCTGTCTCGAAATCCTCGGTATTGATTCTGGTAAGGCGCTCGCTCTTAACCCTTCTCTCCACTCGACTTCCCTTGATTCTATCCATTCCATCATATCATACCTTCAGTCTAAGGGCATTTACCAAAAGGACTTGCCCAAGATTTTTGGGATGTGTCCTCAACTTCTTACCTCCAACATTAAATCCCAACTCAACCCGGTTTTCGATTTCCTGTCTTTTCATCTTGGGGTTCCTGAACATCATTTTCGGAAAGTGATCAACAAATGTCCAAGACTTTTAGTTTCAAGTGTTAGTGATCAACTTAAGCCTGCTCTTTATTATCTTAAAAGACTCGGCTTTCAAAACTATGAGGCCTTGGCTTATCAGGATCCAATCTTGTTGGTGTCAAACGTGGAGAAGACATTGATTCCAAAACTTGAGTATTTGATTGGATTGGGTTTTACTAGAAAAGAAGCAGTTGGTATGGTTTTAAGGTGTCCTGCTTTGTTTACTTTTAGTATTGACAACAATTATAAGCCTAAACTTGGGTATTTTCTTGAGGAAATCAAAGGTACATTGGAGGAATTGAAGGAATTTCCTCAGTATTTTGCTTTTAGTTTGGACAAGAGGATTAAGCCAAGGCATTTAGAAGTTTTGGAGATTGGATTAAAGATTCCTCTATCACTTATGCTCAAGGCTACTGATGAAGAATTTAATGATTTGATAAGGCAAGGAAACAAGGCGGAAATCTTATGA

Coding sequence (CDS)

ATGAGAGCAGTAGCATCAGCACTTCATTCTTCACTCTGTTTCTCACCTCCATTAATCCCGCCTTCGAACCCGAACTTCGATCAATTACAACAACCAACCCCCAAACCCCAAAGCATCCTTATTAACAACCCTCTCTACACCCAAACTCATCCCAATATTTCCCTCCAATTTAAAGAAAAGATCCTCTGTCTCGAAATCCTCGGTATTGATTCTGGTAAGGCGCTCGCTCTTAACCCTTCTCTCCACTCGACTTCCCTTGATTCTATCCATTCCATCATATCATACCTTCAGTCTAAGGGCATTTACCAAAAGGACTTGCCCAAGATTTTTGGGATGTGTCCTCAACTTCTTACCTCCAACATTAAATCCCAACTCAACCCGGTTTTCGATTTCCTGTCTTTTCATCTTGGGGTTCCTGAACATCATTTTCGGAAAGTGATCAACAAATGTCCAAGACTTTTAGTTTCAAGTGTTAGTGATCAACTTAAGCCTGCTCTTTATTATCTTAAAAGACTCGGCTTTCAAAACTATGAGGCCTTGGCTTATCAGGATCCAATCTTGTTGGTGTCAAACGTGGAGAAGACATTGATTCCAAAACTTGAGTATTTGATTGGATTGGGTTTTACTAGAAAAGAAGCAGTTGGTATGGTTTTAAGGTGTCCTGCTTTGTTTACTTTTAGTATTGACAACAATTATAAGCCTAAACTTGGGTATTTTCTTGAGGAAATCAAAGGTACATTGGAGGAATTGAAGGAATTTCCTCAGTATTTTGCTTTTAGTTTGGACAAGAGGATTAAGCCAAGGCATTTAGAAGTTTTGGAGATTGGATTAAAGATTCCTCTATCACTTATGCTCAAGGCTACTGATGAAGAATTTAATGATTTGATAAGGCAAGGAAACAAGGCGGAAATCTTATGA

Protein sequence

MRAVASALHSSLCFSPPLIPPSNPNFDQLQQPTPKPQSILINNPLYTQTHPNISLQFKEKILCLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGIYQKDLPKIFGMCPQLLTSNIKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQNYEALAYQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPKLGYFLEEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDLIRQGNKAEIL

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo11480	Spo11480	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo11480.1	Spo11480.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11480.1.CDS.1	Spo11480.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11480.1.exon.1	Spo11480.1.exon.1	exon

Homology

[Close]

BLAST of Spo11480.1 vs. NCBI nr
Match: gi|902230232|gb|KNA21770.1| (hypothetical protein SOVF_040200 [Spinacia oleracea])

HSP 1 Score: 608.6 bits (1568), Expect = 6.000e-171
Identity = 304/305 (99.67%), Postives = 305/305 (100.00%), Query Frame = 1

		  
Query: 1   MRAVASALHSSLCFSPPLIPPSNPNFDQLQQPTPKPQSILINNPLYTQTHPNISLQFKEK 60
           MRAVASALHSSLCFSPPLIPPSNPNFDQLQQPTPKPQSILINNPLYTQTHPNISLQFKEK
Sbjct: 1   MRAVASALHSSLCFSPPLIPPSNPNFDQLQQPTPKPQSILINNPLYTQTHPNISLQFKEK 60

Query: 61  ILCLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGIYQKDLPKIFGMCPQLLTSN 120
           ILCLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGI+QKDLPKIFGMCPQLLTSN
Sbjct: 61  ILCLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGIHQKDLPKIFGMCPQLLTSN 120

Query: 121 IKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQNYEAL 180
           IKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQNYEAL
Sbjct: 121 IKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQNYEAL 180

Query: 181 AYQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPKLGYFL 240
           AYQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPKLGYFL
Sbjct: 181 AYQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPKLGYFL 240

Query: 241 EEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDLIRQGN 300
           EEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDLIRQGN
Sbjct: 241 EEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDLIRQGN 300

Query: 301 KAEIL 306
           KAEIL
Sbjct: 301 KAEIL 305

[Close]

BLAST of Spo11480.1 vs. NCBI nr
Match: gi|731351574|ref|XP_010687107.1| (PREDICTED: uncharacterized protein LOC104901258 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 482.3 bits (1240), Expect = 6.400e-133
Identity = 239/306 (78.10%), Postives = 275/306 (89.87%), Query Frame = 1

		  
Query: 1   MRAVASALHSSLCFSP----PLIPPSNPNFD-QLQQPTPKPQSILINNPLYTQTHPNISL 60
           MRA+ASAL SSLCFSP    PL+PPSNPN +   QQ T K +SILIN+PLY+QTHPN+SL
Sbjct: 1   MRAIASALQSSLCFSPQTSPPLVPPSNPNLNIDQQQLTSKSKSILINHPLYSQTHPNLSL 60

Query: 61  QFKEKILCLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGIYQKDLPKIFGMCPQ 120
           QFKEKILCLEILGID+GKAL+ NPSLHS+SLDSIHSIIS+LQSKGI+QKDLP+IFGMCPQ
Sbjct: 61  QFKEKILCLEILGIDAGKALSHNPSLHSSSLDSIHSIISFLQSKGIHQKDLPRIFGMCPQ 120

Query: 121 LLTSNIKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQ 180
           +LTSNIKS+L+PVFDFL + LGVPE+ FRKVINKCPRLL+SSV DQLKPAL+YLKRLGF+
Sbjct: 121 ILTSNIKSELDPVFDFLFYDLGVPEYKFRKVINKCPRLLISSVRDQLKPALFYLKRLGFK 180

Query: 181 NYEALAYQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPK 240
           +YE+LAY DPILLVSNVE+TLIPKLEYLIGLGF+++E   MVLRCPALFTFSI+NN+KPK
Sbjct: 181 DYESLAYNDPILLVSNVEQTLIPKLEYLIGLGFSKEEVAHMVLRCPALFTFSIENNFKPK 240

Query: 241 LGYFLEEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDL 300
           L YFL E+KG LEELKEFPQYFAFSL+KRIKPRH E+ + GL +PLSLMLK TDE+FN L
Sbjct: 241 LEYFLGEMKGKLEELKEFPQYFAFSLEKRIKPRHFEISQSGLNLPLSLMLKTTDEDFNQL 300

Query: 301 IRQGNK 302
           I +GNK
Sbjct: 301 ISRGNK 306

[Close]

BLAST of Spo11480.1 vs. NCBI nr
Match: gi|743932260|ref|XP_011010417.1| (PREDICTED: uncharacterized protein LOC105115276 [Populus euphratica])

HSP 1 Score: 411.0 bits (1055), Expect = 1.800e-111
Identity = 206/299 (68.90%), Postives = 248/299 (82.94%), Query Frame = 1

		  
Query: 3   AVASALHSSLCFSPPLIPPSNPNFDQLQ--QPTPKPQSILINNPLYTQTHPNISLQFKEK 62
           A A+ALHSSLCFS P    S+P+  Q    Q + K +S+L  +PLYT  H NIS + KEK
Sbjct: 7   AAAAALHSSLCFSSPK-QTSHPSISQQPNIQLSVKSKSLLHKHPLYTPAHTNISFEIKEK 66

Query: 63  ILCLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGIYQKDLPKIFGMCPQLLTSN 122
           ILCLEI+G+DSGKAL+ NPSLH+ SL SI SII +LQSKGI+QKDLP+IFGMCP++LTSN
Sbjct: 67  ILCLEIMGVDSGKALSQNPSLHTASLGSIQSIIFFLQSKGIHQKDLPRIFGMCPKVLTSN 126

Query: 123 IKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQNYEAL 182
           I++ L PVF+FLS  L VP+++FRK INKCPRLLVSSV DQLKP L+YL+RLGF++ EAL
Sbjct: 127 IRTDLKPVFNFLSQDLKVPDNNFRKAINKCPRLLVSSVRDQLKPCLFYLQRLGFEDLEAL 186

Query: 183 AYQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPKLGYFL 242
           AYQDP+LLVSNVE TLIPKL+YL  +GF+R EAV MVLRCPALFTFS++NN+KPK  YF 
Sbjct: 187 AYQDPVLLVSNVENTLIPKLKYLESIGFSRDEAVAMVLRCPALFTFSVENNFKPKFDYFA 246

Query: 243 EEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDLIRQG 300
           EE+KG L ELK FPQYFAFSLDKRIKPRH+EV++ G+KIPL LMLK+TDEEF ++IR G
Sbjct: 247 EEMKGKLTELKGFPQYFAFSLDKRIKPRHMEVVQSGVKIPLRLMLKSTDEEFGEMIRPG 304

[Close]

BLAST of Spo11480.1 vs. NCBI nr
Match: gi|566193346|ref|XP_002317291.2| (hypothetical protein POPTR_0011s02560g [Populus trichocarpa])

HSP 1 Score: 410.6 bits (1054), Expect = 2.400e-111
Identity = 205/297 (69.02%), Postives = 247/297 (83.16%), Query Frame = 1

		  
Query: 5   ASALHSSLCFSPPLIPPSNPNFDQLQ--QPTPKPQSILINNPLYTQTHPNISLQFKEKIL 64
           A+ALHSSLCFS P   P  P+  Q    Q + K +S+L  +PLYT  H NIS + KEKIL
Sbjct: 30  AAALHSSLCFSSPKQTPQ-PSISQQPNIQLSVKSKSLLHKHPLYTPAHTNISFEIKEKIL 89

Query: 65  CLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGIYQKDLPKIFGMCPQLLTSNIK 124
           CLEI+G+DSGKAL+ NPSLH+ SLDSI SII +LQSKGI+QKDLP+IFGMCP++LTSNI+
Sbjct: 90  CLEIMGVDSGKALSQNPSLHTASLDSIQSIIFFLQSKGIHQKDLPRIFGMCPKVLTSNIR 149

Query: 125 SQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQNYEALAY 184
           + L PVF+FLS  L VP+++FRK INKCPRLLVSSV DQLKP L+YL+RLGF++ EALAY
Sbjct: 150 TDLKPVFNFLSQDLKVPDNNFRKAINKCPRLLVSSVRDQLKPCLFYLQRLGFEDLEALAY 209

Query: 185 QDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPKLGYFLEE 244
           QDP+LLVSNV+ TLIPKL+YL  +GF+R EAV MVLRCPALFTFS++NN+KPK  YF EE
Sbjct: 210 QDPVLLVSNVQNTLIPKLKYLESIGFSRDEAVAMVLRCPALFTFSVENNFKPKFDYFAEE 269

Query: 245 IKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDLIRQG 300
           +KG L ELK FPQYFAFSLDKRIKPRH+EV++ G+KIPL LMLK+TDEEF ++IR G
Sbjct: 270 MKGKLTELKGFPQYFAFSLDKRIKPRHVEVVQSGVKIPLRLMLKSTDEEFGEMIRPG 325

[Close]

BLAST of Spo11480.1 vs. NCBI nr
Match: gi|747097316|ref|XP_011096617.1| (PREDICTED: uncharacterized protein LOC105175752 [Sesamum indicum])

HSP 1 Score: 407.5 bits (1046), Expect = 2.000e-110
Identity = 200/296 (67.57%), Postives = 245/296 (82.77%), Query Frame = 1

		  
Query: 1   MRAVASALHSSLCFSPPLIPPSNPNFDQLQQPTPKPQSILINNPLYTQTHPNISLQFKEK 60
           M A A+AL SS+CFS P   PS     Q    T KP+++L  +PLY  TH NIS QFKEK
Sbjct: 1   MPAAAAALRSSMCFSSPKPAPSLEQ--QSNHLTAKPKTLLHKHPLYQSTHANISFQFKEK 60

Query: 61  ILCLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGIYQKDLPKIFGMCPQLLTSN 120
           ILCLEI+G+DSG+ALA NPSLH+ SL SIH+I+++LQSKGI+ KDL +IFGMCP +LTS+
Sbjct: 61  ILCLEIMGVDSGRALAQNPSLHTASLHSIHAIVTFLQSKGIHLKDLGRIFGMCPTILTSD 120

Query: 121 IKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQNYEAL 180
           IK+ LNPVF+FLS+ L VP+ +FRKVINKCPRLL+SSV DQL+PAL+YL+RLGF +  AL
Sbjct: 121 IKTDLNPVFNFLSYDLRVPDQNFRKVINKCPRLLISSVRDQLRPALFYLQRLGFTDLHAL 180

Query: 181 AYQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPKLGYFL 240
           AYQDPILLVS+VEKTLIPKL +L+ LGF R +AV MVLRCP LFTFSI+NN+KPK  YF+
Sbjct: 181 AYQDPILLVSSVEKTLIPKLNFLVSLGFCRADAVEMVLRCPGLFTFSIENNFKPKFEYFM 240

Query: 241 EEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDLI 297
           +E++G LEELKEFPQYFAFSL+ RIKPRH+E +E G+K+PLSLMLK TDEEF +L+
Sbjct: 241 KEMEGKLEELKEFPQYFAFSLENRIKPRHIEAIESGVKVPLSLMLKTTDEEFRELL 294

[Close]

BLAST of Spo11480.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQG1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_040200 PE=4 SV=1)

HSP 1 Score: 608.6 bits (1568), Expect = 4.200e-171
Identity = 304/305 (99.67%), Postives = 305/305 (100.00%), Query Frame = 1

		  
Query: 1   MRAVASALHSSLCFSPPLIPPSNPNFDQLQQPTPKPQSILINNPLYTQTHPNISLQFKEK 60
           MRAVASALHSSLCFSPPLIPPSNPNFDQLQQPTPKPQSILINNPLYTQTHPNISLQFKEK
Sbjct: 1   MRAVASALHSSLCFSPPLIPPSNPNFDQLQQPTPKPQSILINNPLYTQTHPNISLQFKEK 60

Query: 61  ILCLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGIYQKDLPKIFGMCPQLLTSN 120
           ILCLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGI+QKDLPKIFGMCPQLLTSN
Sbjct: 61  ILCLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGIHQKDLPKIFGMCPQLLTSN 120

Query: 121 IKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQNYEAL 180
           IKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQNYEAL
Sbjct: 121 IKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQNYEAL 180

Query: 181 AYQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPKLGYFL 240
           AYQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPKLGYFL
Sbjct: 181 AYQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPKLGYFL 240

Query: 241 EEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDLIRQGN 300
           EEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDLIRQGN
Sbjct: 241 EEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDLIRQGN 300

Query: 301 KAEIL 306
           KAEIL
Sbjct: 301 KAEIL 305

[Close]

BLAST of Spo11480.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BRV2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g187970 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 4.500e-133
Identity = 239/306 (78.10%), Postives = 275/306 (89.87%), Query Frame = 1

		  
Query: 1   MRAVASALHSSLCFSP----PLIPPSNPNFD-QLQQPTPKPQSILINNPLYTQTHPNISL 60
           MRA+ASAL SSLCFSP    PL+PPSNPN +   QQ T K +SILIN+PLY+QTHPN+SL
Sbjct: 1   MRAIASALQSSLCFSPQTSPPLVPPSNPNLNIDQQQLTSKSKSILINHPLYSQTHPNLSL 60

Query: 61  QFKEKILCLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGIYQKDLPKIFGMCPQ 120
           QFKEKILCLEILGID+GKAL+ NPSLHS+SLDSIHSIIS+LQSKGI+QKDLP+IFGMCPQ
Sbjct: 61  QFKEKILCLEILGIDAGKALSHNPSLHSSSLDSIHSIISFLQSKGIHQKDLPRIFGMCPQ 120

Query: 121 LLTSNIKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQ 180
           +LTSNIKS+L+PVFDFL + LGVPE+ FRKVINKCPRLL+SSV DQLKPAL+YLKRLGF+
Sbjct: 121 ILTSNIKSELDPVFDFLFYDLGVPEYKFRKVINKCPRLLISSVRDQLKPALFYLKRLGFK 180

Query: 181 NYEALAYQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPK 240
           +YE+LAY DPILLVSNVE+TLIPKLEYLIGLGF+++E   MVLRCPALFTFSI+NN+KPK
Sbjct: 181 DYESLAYNDPILLVSNVEQTLIPKLEYLIGLGFSKEEVAHMVLRCPALFTFSIENNFKPK 240

Query: 241 LGYFLEEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDL 300
           L YFL E+KG LEELKEFPQYFAFSL+KRIKPRH E+ + GL +PLSLMLK TDE+FN L
Sbjct: 241 LEYFLGEMKGKLEELKEFPQYFAFSLEKRIKPRHFEISQSGLNLPLSLMLKTTDEDFNQL 300

Query: 301 IRQGNK 302
           I +GNK
Sbjct: 301 ISRGNK 306

[Close]

BLAST of Spo11480.1 vs. UniProtKB/TrEMBL
Match: B9HZP5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s02560g PE=4 SV=2)

HSP 1 Score: 410.6 bits (1054), Expect = 1.700e-111
Identity = 205/297 (69.02%), Postives = 247/297 (83.16%), Query Frame = 1

		  
Query: 5   ASALHSSLCFSPPLIPPSNPNFDQLQ--QPTPKPQSILINNPLYTQTHPNISLQFKEKIL 64
           A+ALHSSLCFS P   P  P+  Q    Q + K +S+L  +PLYT  H NIS + KEKIL
Sbjct: 30  AAALHSSLCFSSPKQTPQ-PSISQQPNIQLSVKSKSLLHKHPLYTPAHTNISFEIKEKIL 89

Query: 65  CLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGIYQKDLPKIFGMCPQLLTSNIK 124
           CLEI+G+DSGKAL+ NPSLH+ SLDSI SII +LQSKGI+QKDLP+IFGMCP++LTSNI+
Sbjct: 90  CLEIMGVDSGKALSQNPSLHTASLDSIQSIIFFLQSKGIHQKDLPRIFGMCPKVLTSNIR 149

Query: 125 SQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQNYEALAY 184
           + L PVF+FLS  L VP+++FRK INKCPRLLVSSV DQLKP L+YL+RLGF++ EALAY
Sbjct: 150 TDLKPVFNFLSQDLKVPDNNFRKAINKCPRLLVSSVRDQLKPCLFYLQRLGFEDLEALAY 209

Query: 185 QDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPKLGYFLEE 244
           QDP+LLVSNV+ TLIPKL+YL  +GF+R EAV MVLRCPALFTFS++NN+KPK  YF EE
Sbjct: 210 QDPVLLVSNVQNTLIPKLKYLESIGFSRDEAVAMVLRCPALFTFSVENNFKPKFDYFAEE 269

Query: 245 IKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDLIRQG 300
           +KG L ELK FPQYFAFSLDKRIKPRH+EV++ G+KIPL LMLK+TDEEF ++IR G
Sbjct: 270 MKGKLTELKGFPQYFAFSLDKRIKPRHVEVVQSGVKIPLRLMLKSTDEEFGEMIRPG 325

[Close]

BLAST of Spo11480.1 vs. UniProtKB/TrEMBL
Match: A0A067L0I6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04653 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 2.400e-110
Identity = 206/303 (67.99%), Postives = 247/303 (81.52%), Query Frame = 1

		  
Query: 3   AVASALHSSLCFSP--PLIPPSNPNFDQLQQP----TPKPQSILINNPLYTQTHPNISLQ 62
           + A+ALH++LCFS   P   PSN      QQP    + KP+S L  +PLYT  H NIS Q
Sbjct: 5   SAAAALHTTLCFSTQKPTPTPSNS-----QQPNAHLSAKPKSPLHKHPLYTPLHTNISFQ 64

Query: 63  FKEKILCLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGIYQKDLPKIFGMCPQL 122
            KEKILCLEI+GIDSGKAL+ NPSLHS SLDSI SIIS+L SKGI QKDL +IFGMCPQ+
Sbjct: 65  IKEKILCLEIMGIDSGKALSQNPSLHSASLDSIQSIISFLHSKGILQKDLARIFGMCPQI 124

Query: 123 LTSNIKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQN 182
           LTSNIK++LNPVFDFL   L VPE+ FR+VINKCPRLL+SSV DQLKP L+YL+RLGF++
Sbjct: 125 LTSNIKTELNPVFDFLYHDLEVPENKFRRVINKCPRLLISSVKDQLKPCLFYLQRLGFKD 184

Query: 183 YEALAYQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPKL 242
            EALAYQD ILLVSNVEKTLIPKL++L  LGF++ E VGMVLRCPALFTFS++NN+KPK 
Sbjct: 185 LEALAYQDSILLVSNVEKTLIPKLKHLESLGFSKDETVGMVLRCPALFTFSVENNFKPKF 244

Query: 243 GYFLEEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDLI 300
            +F+EE+ G LEELK FPQYFAFSL+ RIKPRHLE+ ++G K+ L +MLK+TDE+F +L+
Sbjct: 245 SFFMEEMNGKLEELKAFPQYFAFSLENRIKPRHLEITQLGTKMALPIMLKSTDEQFRELL 302

[Close]

BLAST of Spo11480.1 vs. UniProtKB/TrEMBL
Match: F6HLU1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g04040 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 7.000e-110
Identity = 204/295 (69.15%), Postives = 250/295 (84.75%), Query Frame = 1

		  
Query: 5   ASALHSSLCFS--PPLIPPSNPNFDQLQQP-TPKPQSILINNPLYTQTHPNISLQFKEKI 64
           A+A HSS CFS   P   PSN +  Q   P T KP+++L  +PLYT  H N+SLQFKEKI
Sbjct: 54  ATAYHSSPCFSLQSPSSLPSNSH--QPNNPLTIKPKNVLQKHPLYTPAHSNLSLQFKEKI 113

Query: 65  LCLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGIYQKDLPKIFGMCPQLLTSNI 124
           LCLEI+G+DSGKAL+LNPSLH+ +L SIHSIIS+LQSKGI+QKDL +IFGMCP+LLTSNI
Sbjct: 114 LCLEIMGVDSGKALSLNPSLHTATLHSIHSIISFLQSKGIHQKDLGRIFGMCPKLLTSNI 173

Query: 125 KSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQNYEALA 184
           ++ L PVF+FLS  L VP+  FR+VINKCPRLLVSSV DQLKPAL +L+RLGFQ+ EALA
Sbjct: 174 RTDLIPVFNFLSQDLKVPDQSFRRVINKCPRLLVSSVRDQLKPALIFLQRLGFQDLEALA 233

Query: 185 YQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPKLGYFLE 244
           +QDP+LLVS+VEKTLIPKLEYL+ LG +R +AVGMVLRCP LFTFS++NN+KPK  YF+ 
Sbjct: 234 HQDPVLLVSSVEKTLIPKLEYLVSLGMSRADAVGMVLRCPGLFTFSVENNFKPKFEYFVG 293

Query: 245 EIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDLI 297
           E++G LEELKEFPQYFAFSL+KRIKPRH+E ++ G+K+PL+LMLK+TDEEF +L+
Sbjct: 294 EMEGNLEELKEFPQYFAFSLEKRIKPRHMEAVQNGVKVPLALMLKSTDEEFRELM 346

[Close]

BLAST of Spo11480.1 vs. ExPASy Swiss-Prot
Match: MTEF1_ARATH (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 237.7 bits (605), Expect = 1.700e-61
Identity = 119/238 (50.00%), Postives = 171/238 (71.85%), Query Frame = 1

		  
Query: 57  FKEKILCLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGIYQKDLPKIFGMCPQL 116
           F+EK++ L+ L +D  KAL +NPSL S  + S+ S+ + L S G+ +  + +I  M P L
Sbjct: 33  FREKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDL 92

Query: 117 LTSNIKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQN 176
           LTS+ +S++ PV  FLS  + + E    K I++CPRLL+SSV  QL+PAL +LK LGF  
Sbjct: 93  LTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVG 152

Query: 177 YEALAYQDPILLVSNVEKTLIPKLEYL-IGLGFTRKEAVGMVLRCPALFTFSIDNNYKPK 236
            + +  ++ +LLVSNVE+TLIPK+EYL  GLGFTR+E   MV+R PAL T+S+DNN  PK
Sbjct: 153 RDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPK 212

Query: 237 LGYFLEEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFN 294
           + +F+EE++G ++ELK FPQYF+FSL+++IKPRH  + E G+ +PLS MLK +D +FN
Sbjct: 213 VEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFN 270

[Close]

BLAST of Spo11480.1 vs. ExPASy Swiss-Prot
Match: MTEF5_ARATH (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana GN=MTERF5 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 8.400e-24
Identity = 73/241 (30.29%), Postives = 126/241 (52.28%), Query Frame = 1

		  
Query: 59  EKILCLEILGIDSGKALALNPSLHSTSL-DSIHSIISYLQSKGIYQKDLPKIFGMCPQLL 118
           E +L L I   D    L   P +   SL D++   +++L++ GI +    KI    P +L
Sbjct: 237 EFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAIL 296

Query: 119 TSNIKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQNY 178
           T + + +L    +FLS   G+ E    +++ +CP ++  SV D+L+P + Y + L   + 
Sbjct: 297 TYS-RQKLTSTVEFLS-QTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLNV-DV 356

Query: 179 EALAYQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPKLG 238
             L ++ P     ++E  L P  E+ +  GF   E   M+ R  AL+TFS+  N  PK  
Sbjct: 357 AVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWD 416

Query: 239 YFLEEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDLIR 298
           YF + +     EL +FPQ+F +SL +RIKPR+  V   G+++ L+ +L  +  EF  +++
Sbjct: 417 YF-QTMDYPKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEKVVK 473

[Close]

BLAST of Spo11480.1 vs. ExPASy Swiss-Prot
Match: MTEF2_ARATH (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.300e-21
Identity = 71/247 (28.74%), Postives = 125/247 (50.61%), Query Frame = 1

		  
Query: 58  KEKILCLEILGIDS---GKALALNPSLHSTSLDSIHS-IISYLQSKGIYQKDLPKIFGMC 117
           ++KI  L+  G+ +   G+ LA  P L   S++     ++ Y    GI ++ + +I  + 
Sbjct: 353 EKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVK 412

Query: 118 PQLLTSNIKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPA-LYYLKRL 177
           P L   +++  + P   FL   +G+P      ++ K P LL +S+  +++P  ++ L R 
Sbjct: 413 PILYCIDLEKTIAPKVRFLQ-EMGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRA 472

Query: 178 GFQNYEA--LAYQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDN 237
           G    +   +   DP LL  ++   L P + Y I LG    +   M+   P L  +++DN
Sbjct: 473 GVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVDN 532

Query: 238 NYKPKLGYFLEEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDE 297
             +PK  Y    +   L++L EFP++F++SL++RI PRH  ++E  +   L  ML  TDE
Sbjct: 533 -LRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDE 592

[Close]

BLAST of Spo11480.1 vs. ExPASy Swiss-Prot
Match: MTEF9_ARATH (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.300e-16
Identity = 49/198 (24.75%), Postives = 100/198 (50.51%), Query Frame = 1

		  
Query: 81  LHSTSLDSIHSIISYLQSKGIYQKDLPKIFGMCPQLLTSNIKSQLNPVFDFLSFHLGVPE 140
           L  T  +++ + IS+L   GI    + +I    P L + ++++ L P   +L   +G+ E
Sbjct: 247 LQYTVENNLKAHISFLMGLGIPNSKIGQIVAATPSLFSYSVENSLRPTIRYLIEEVGIKE 306

Query: 141 HHFRKVINKCPRLLVSSVSDQLKPALYYL-KRLGF--QNYEALAYQDPILLVSNVEKTLI 200
               KV+   P++LV  +         +L K LG    +   +  + P LL  +++   +
Sbjct: 307 TDVGKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVKKHPQLLHYSIDDGFL 366

Query: 201 PKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPKLGYFLEEIKGTLEELKEFPQYF 260
           P++ +L  +G    + + ++     + + S+++N KPK  Y + E+   +  L ++P Y 
Sbjct: 367 PRINFLRSIGMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYLVNELNNEVHILTKYPMYL 426

Query: 261 AFSLDKRIKPRHLEVLEI 276
           + SLD+RI+PRH  ++E+
Sbjct: 427 SLSLDQRIRPRHRFLVEL 444

[Close]

BLAST of Spo11480.1 vs. ExPASy Swiss-Prot
Match: MTEF4_ARATH (Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana GN=MTERF4 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.100e-13
Identity = 51/207 (24.64%), Postives = 99/207 (47.83%), Query Frame = 1

		  
Query: 89  IHSIISYLQSKGIYQKDLPKIFGMCPQLLTSNIKSQLNPVFDFLSFHLGVPEHHFRKVIN 148
           I  ++ YL+  GI +    ++    P +L   +   + P    L     V E     +I 
Sbjct: 287 IKPLVEYLEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQ-DFNVRETSLPSIIA 346

Query: 149 KCPRLLVSSVSDQL---KPALYYLKRLGFQNYEALAYQDPILLVSNVEKTLIPKLEYLIG 208
           + P ++   +  +L   +  L     L  ++  +L  + P   VS  E  ++  +++L  
Sbjct: 347 QYPEIIGIDLKPKLDTQRKLLCSAIHLNPEDLGSLIERMP-QFVSLSESPMLKHIDFLTK 406

Query: 209 LGFTRKEAVGMVLRCPALFTFSIDNNYKPKLGYFLEEIKGTLEELKEFPQYFAFSLDKRI 268
            GF+  +   MV+ CP +   ++    K    YF +E+K  L++L +FP +F + L+  +
Sbjct: 407 CGFSIDQTREMVIGCPQVLALNL-GIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLESTV 466

Query: 269 KPRHLEVLEIGLKIPLSLMLKATDEEF 293
           KPRH ++++ G+K  L+ ML  +DE+F
Sbjct: 467 KPRHKKIIKKGIKCSLAWMLNCSDEKF 490

[Close]

BLAST of Spo11480.1 vs. TAIR (Arabidopsis)
Match: AT2G34620.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 374.8 bits (961), Expect = 5.100e-104
Identity = 191/296 (64.53%), Postives = 236/296 (79.73%), Query Frame = 1

		  
Query: 4   VASALHSSLCFSPPLIPPSNPNFDQLQQPTPKPQSILIN---NPLYTQTHPNISLQFKEK 63
           +++AL SSL  SP    PS P   Q    + KP +I  N   +PL+T     ++LQ KEK
Sbjct: 1   MSAALSSSLYISPK--KPSCPQQSQSTFLSTKPTTIKTNLHSHPLFTVADQTVTLQMKEK 60

Query: 64  ILCLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGIYQKDLPKIFGMCPQLLTSN 123
           ILCLE++GIDSGKAL+LNP L S  LDSI S++ +LQSKGIY  DLP+I GMCP++LTS+
Sbjct: 61  ILCLELMGIDSGKALSLNPCLCSAPLDSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSD 120

Query: 124 IKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQNYEAL 183
           ++++L PVF FLS  L VPE+ FR+VI KCPRLL+SSV DQLKPAL+YL+RLG ++ EAL
Sbjct: 121 VRTELYPVFMFLSNDLHVPENAFRRVIKKCPRLLISSVEDQLKPALFYLQRLGLKDLEAL 180

Query: 184 AYQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPKLGYFL 243
           AYQDPILLVS+VE TLIPKL +L  +GF+R EA+GM+LRCPALFTFSI+NN+KPKL YF+
Sbjct: 181 AYQDPILLVSSVEHTLIPKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFM 240

Query: 244 EEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDLI 297
            EIKG LE LKEFPQYFAFSL+KRIKPRHLE +E GL++PLSLMLK+TDEEF  L+
Sbjct: 241 SEIKGKLENLKEFPQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQLL 294

[Close]

BLAST of Spo11480.1 vs. TAIR (Arabidopsis)
Match: AT2G03050.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 237.7 bits (605), Expect = 9.700e-63
Identity = 119/238 (50.00%), Postives = 171/238 (71.85%), Query Frame = 1

		  
Query: 57  FKEKILCLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGIYQKDLPKIFGMCPQL 116
           F+EK++ L+ L +D  KAL +NPSL S  + S+ S+ + L S G+ +  + +I  M P L
Sbjct: 32  FREKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDL 91

Query: 117 LTSNIKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQN 176
           LTS+ +S++ PV  FLS  + + E    K I++CPRLL+SSV  QL+PAL +LK LGF  
Sbjct: 92  LTSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVG 151

Query: 177 YEALAYQDPILLVSNVEKTLIPKLEYL-IGLGFTRKEAVGMVLRCPALFTFSIDNNYKPK 236
            + +  ++ +LLVSNVE+TLIPK+EYL  GLGFTR+E   MV+R PAL T+S+DNN  PK
Sbjct: 152 RDTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPK 211

Query: 237 LGYFLEEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFN 294
           + +F+EE++G ++ELK FPQYF+FSL+++IKPRH  + E G+ +PLS MLK +D +FN
Sbjct: 212 VEFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFN 269

[Close]

BLAST of Spo11480.1 vs. TAIR (Arabidopsis)
Match: AT2G36000.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 176.4 bits (446), Expect = 2.700e-44
Identity = 97/253 (38.34%), Postives = 145/253 (57.31%), Query Frame = 1

		  
Query: 47  TQTHPNISLQFKEKILCLEILGIDSGKALALNPSLHSTSLDSIHSIISYLQSKGIY--QK 106
           T T   +     EK++ L+ LGID    +  +P L ST+L ++ S++ Y+ +  I    +
Sbjct: 63  TTTTETLESSIHEKLIYLDSLGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQ 122

Query: 107 DLPKIFGMCPQLLTSNIKSQLNPVFDFLSFHLGVPE-HHFRKVINKCPRLLVSSVSDQLK 166
           D  ++  MCP+LLTS + S   PV  FL   +GV      R+ + + PRLL  SV  QL+
Sbjct: 123 DFRRLVSMCPELLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLR 182

Query: 167 PALYYLKRLGFQNYEALAYQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPAL 226
           P LY+L+R+G  +     Y    LL  +V+  L+P+++Y   LGF+R+ A  M  R P L
Sbjct: 183 PTLYFLQRIGILDPHKHTY----LLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQL 242

Query: 227 FTFSIDNNYKPKLGYFLEEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSL 286
           F +SI  NY+PKL Y + E+   + E+ EFPQYF+FSL+ RIKPRH      G++ PL +
Sbjct: 243 FNYSIAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPV 302

Query: 287 MLKATDEEFNDLI 297
           MLK  +  F D +
Sbjct: 303 MLKTNEAGFRDTL 311

[Close]

BLAST of Spo11480.1 vs. TAIR (Arabidopsis)
Match: AT3G18870.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 160.6 bits (405), Expect = 1.500e-39
Identity = 99/262 (37.79%), Postives = 149/262 (56.87%), Query Frame = 1

		  
Query: 34  PKPQSILINNPLYTQTHPNISLQFKEKILCLEILGIDSGKALALNPSLH--STSLDSIHS 93
           P P S   + PLY +         +E +  L  LGI     +  NP L   +  L  I S
Sbjct: 20  PSPSS---SKPLYLK----FQTSHRENLRHLSSLGI-----VPQNPRLAPPANDLSVILS 79

Query: 94  IISYLQSKGIYQKDLPKIFGMCPQLLTSNIK-SQLNPVFDFLSFHLGVPEHHFRKVINKC 153
            ++ L+SKGI  +D P++  +CPQL +     S+L+PVFDFL+  LG      R +I  C
Sbjct: 80  AVNLLKSKGISDEDFPRLVFLCPQLFSPTFDISKLDPVFDFLTGELGASAEESRGLIVNC 139

Query: 154 PRLLVSSVSDQLKPALYYLKRLGFQNYEALAYQDPILLVSNVEKTLIPKLEYLIGLGFTR 213
           P +L S V   L+P L YLK LG +N    +  +  +L + VEK L  K+ +L  +GF  
Sbjct: 140 PNILFSDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVEK-LRAKMRFLKSIGFEH 199

Query: 214 KEAVGMVLRCPALFTFSIDNNYKPKLGYFLEEIKGTLEELKEFPQYFAFSLDKRIKPRHL 273
           +EA  +  R PA+F +S+++N +PK  + + +++  LEELK+FPQYFAFSL KRI+PRH 
Sbjct: 200 EEAARVCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLGKRIRPRHW 259

Query: 274 EVLEIGLKIPLSLMLKATDEEF 293
            + +  +++ LS ML   D++F
Sbjct: 260 HLKKKNVRVSLSRMLMWGDQKF 268

[Close]

BLAST of Spo11480.1 vs. TAIR (Arabidopsis)
Match: AT4G14605.1 (Mitochondrial transcription termination factor family protein)

HSP 1 Score: 112.5 bits (280), Expect = 4.700e-25
Identity = 73/241 (30.29%), Postives = 126/241 (52.28%), Query Frame = 1

		  
Query: 59  EKILCLEILGIDSGKALALNPSLHSTSL-DSIHSIISYLQSKGIYQKDLPKIFGMCPQLL 118
           E +L L I   D    L   P +   SL D++   +++L++ GI +    KI    P +L
Sbjct: 237 EFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAIL 296

Query: 119 TSNIKSQLNPVFDFLSFHLGVPEHHFRKVINKCPRLLVSSVSDQLKPALYYLKRLGFQNY 178
           T + + +L    +FLS   G+ E    +++ +CP ++  SV D+L+P + Y + L   + 
Sbjct: 297 TYS-RQKLTSTVEFLS-QTGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLNV-DV 356

Query: 179 EALAYQDPILLVSNVEKTLIPKLEYLIGLGFTRKEAVGMVLRCPALFTFSIDNNYKPKLG 238
             L ++ P     ++E  L P  E+ +  GF   E   M+ R  AL+TFS+  N  PK  
Sbjct: 357 AVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWD 416

Query: 239 YFLEEIKGTLEELKEFPQYFAFSLDKRIKPRHLEVLEIGLKIPLSLMLKATDEEFNDLIR 298
           YF + +     EL +FPQ+F +SL +RIKPR+  V   G+++ L+ +L  +  EF  +++
Sbjct: 417 YF-QTMDYPKSELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEKVVK 473

The following BLAST results are available for this feature:

BLAST of Spo11480.1 vs. NCBI nr
BLAST of Spo11480.1 vs. UniProtKB/TrEMBL
BLAST of Spo11480.1 vs. ExPASy Swiss-Prot
BLAST of Spo11480.1 vs. TAIR (Arabidopsis)

BLAST of Spo11480.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902230232\|gb\|KNA21770.1\|	6.0e-171	99.6	hypothetical protein SOVF_0402...	[more]
gi\|731351574\|ref\|XP_010687107.1\|	6.4e-133	78.1	PREDICTED: uncharacterized pro...	[more]
gi\|743932260\|ref\|XP_011010417.1\|	1.8e-111	68.9	PREDICTED: uncharacterized pro...	[more]
gi\|566193346\|ref\|XP_002317291.2\|	2.4e-111	69.0	hypothetical protein POPTR_001...	[more]
gi\|747097316\|ref\|XP_011096617.1\|	2.0e-110	67.5	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo11480.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

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Match Name	E-value	Identity	Description
A0A0K9RQG1_SPIOL	4.2e-171	99.6	Uncharacterized protein OS=Spi...	[more]
A0A0J8BRV2_BETVU	4.5e-133	78.1	Uncharacterized protein OS=Bet...	[more]
B9HZP5_POPTR	1.7e-111	69.0	Uncharacterized protein OS=Pop...	[more]
A0A067L0I6_JATCU	2.4e-110	67.9	Uncharacterized protein OS=Jat...	[more]
F6HLU1_VITVI	7.0e-110	69.1	Putative uncharacterized prote...	[more]

BLAST of Spo11480.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

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Match Name	E-value	Identity	Description
MTEF1_ARATH	1.7e-61	50.0	Transcription termination fact...	[more]
MTEF5_ARATH	8.4e-24	30.2	Transcription termination fact...	[more]
MTEF2_ARATH	1.3e-21	28.7	Transcription termination fact...	[more]
MTEF9_ARATH	1.3e-16	24.7	Transcription termination fact...	[more]
MTEF4_ARATH	5.1e-13	24.6	Transcription termination fact...	[more]

BLAST of Spo11480.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

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Match Name	E-value	Identity	Description
AT2G34620.1	5.1e-104	64.5	Mitochondrial transcription te...	[more]
AT2G03050.1	9.7e-63	50.0	Mitochondrial transcription te...	[more]
AT2G36000.1	2.7e-44	38.3	Mitochondrial transcription te...	[more]
AT3G18870.1	1.5e-39	37.7	Mitochondrial transcription te...	[more]
AT4G14605.1	4.7e-25	30.2	Mitochondrial transcription te...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 185..292 score: 5.1E-26coord: 87..178 score: 9.0
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 72..102 score: 110.0coord: 247..278 score: 0.0034coord: 107..139 score: 0.0024coord: 214..246 score: 0.011coord: 144..175 score: 6.2E-4coord: 178..209 score: 0
None	No IPR available	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 5..298 score: 2.3E
None	No IPR available	PANTHER	PTHR13068:SF6	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	coord: 5..298 score: 2.3E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003690	double-stranded DNA binding