Spo11535.1 (mRNA)

Overview
NameSpo11535.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_27 : 2979703 .. 2981982 (-)
Sequence length387
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCAATCGGTTGAAGTTCCTTAGTAGAAGAGAGACCAGTAAGGCTTTGAACAAGAGCCATGAAATTCCGAGGTTGAGTATGAATGATCTTTGGCGATGTAAGATAAATAATGACTGGATTATTACCTTTACAACCTGTTTGGTAACGTCTTTTCTTTGGAGTATGTTGATGAGACGAGTAAGAAGGTTTTTGTATGGTTAAAGGTGAAGGGCGAGGACCATGAATGATGGGGAATGTGTGATTATGAATGAAAGATTTTGTAGGGCTCATGATGTTATGTTTAAAAGGGGTTATGGTATAATTATGTTATGTATAAATGTAATTAATGCATTATGGATTTATGGGCATCATGGAAGAGATTATATAGTGAACATTTGAATAATTTAGGTTGAATTTGGTTGTTGAATTTGAGAATTGAGAGCCTCATGTTGCTGACCGTTGACTATTGATGGCATACAAAATATTGGTCAAAACATCTAAGTAATTTAATTAAATATTGCAGCAATCTAAATGTTTTTTTTATTGTTTTTTTAAATCTCCCGCGCGCTAACTTCCTTTTCTTTAAATTTCCATTAATCAAATTAACATGGGATAATGATCTCCTTTAGTGTGGGACGGCGGCACGGCGTTCTTACCGCAACACTGAAATATTGGTCTACTTGTCTTATATGCACTTGATGCGGCAAATATAAGAAATAGATTTTGGTATCATATTTAAATCTGAAATAAAATGCAAAAAATATAATATAAATGTGATACGTACAAATATAAGAAACATATAAGGTAGATAGAGCCGAACGCATATAAACAGATAGATTAAAATTGTAAGAATTTATTTAAGGGGATAAATTAATTAAAATGTTTCTTTGGGTTTTTCCTATTGGGTAGGTTGTCATTATACTCTCTATTCTATAAGTGTAGATGATATTTTAGTAATTCAAGGGGGACACCAAAAATGGATTTACTAAAATAACCTCACATATTCACTTATATAATAGAGATACACTAGTATTGAAGCCCGTGCGATGCACGAATTTCATTTAATTTTTTATTATTAATTACTTTACACTTGTGTTATTAGGTGGCATTTCGGGTAATGCACATGTTAAGTTTAATTTTTTGTGTAAGCATGAGTTTCGTTTTTTTTTGCGTGTATTTTCCCTAATCACCTAATTAACATAATACACAAAATTTTGGGAACAAAATAAGAAATCGAAGTGGGTAAGTGAAATAAACTTATTATGAACAATTATTATTACAATTAAATCTTACAACCTTTAAAAGCAAGGAGTTGGTTTTCACTATTCATGCAATAGCGTGATGACTAAAACGTCTTACAACCTTTAAAAGCAAGGAGTTGATTTTCACTATTCATGCAATAGCGTGATGACTAAAACGCCCTTAAATTTCTAACATTTATCGTTTGTGCCCTTAATTTCAGCCGTTGCCCCTGCCCCTGCCCCTGCCCCTGCCCCTTCCCTAACCCTTTCCTCCTCCTTTTGCTTGCTTTCCCTTTTCTCTTTCCTCTTGCTTTTCTTCTTCAGCATACTCTCATCTGCCATCTCACATGGCAATTTTTTCGGCCACACAATTCACGAATGAAGGGAGGTTGGATCTATCAGATTAAGAAATTAGGGTCTAATTCAAATATCGCAAAGATCCTCCGCCTCTGAATGGTAAGCTCTTCAGATTTGAATAAATTGTTACCACTTTCAATTGTTTTAGGATTTTAGCGGATTTACCAGCTTTTTCTTCAATATATTTGTTTAATTTGGTTTTGATTAAAGTGTTAATATGAATTATGGTTTGTCTTTCTCTCGAGGTTTCTCTTTCTCTCTCCTCTTTCTGTTCTTCGTGGATTGTAGTTTTTTTTTCTTCTCAATTACGGAAGTTTCTTGATGTTCTAAAGTTAAGGTTGTGTTATATAATCTGATTGTGGATCTCTTGAGCTTGAATTTGATATGGATTGCGTTTTCTAGGGTTTCTACTTCTACATCTTTTTCACTGGTTGATGCGGCGGTGAAAGTAAAGGACCTTCAAGTTCAGTCTATAAGGATAAATTACGCTCAGAAACCCTCGCTCTCCCCAAGCCAAGGTTTCTCTCCTTGAATCTCTCACTTTCTCCTCTATTGATTAGGTTATCAATTTTGAAGCTAGGGTTTTGTTTGATTGGATATTTGATTTGGCATAGGCGAACGTTTTAAGGTTCCAGTTCATTTTGTTCCACATTTCTGGGAGATTTTGTCCCGTTTTTTTGCGTCTTCGTGTCCACCATAG

mRNA sequence

ATGGCCAATCGGTTGAAGTTCCTTAGTAGAAGAGAGACCAGTAAGGCTTTGAACAAGAGCCATGAAATTCCGAGGTTGAGTATGAATGATCTTTGGCGATGTAAGATAAATAATGACTGGATTATTACCTTTACAACCTGTTTGGGTCTAATTCAAATATCGCAAAGATCCTCCGCCTCTGAATGGGTTTCTACTTCTACATCTTTTTCACTGGTTGATGCGGCGGTGAAAGTAAAGGACCTTCAAGTTCAGTCTATAAGGATAAATTACGCTCAGAAACCCTCGCTCTCCCCAAGCCAAGGCGAACGTTTTAAGGTTCCAGTTCATTTTGTTCCACATTTCTGGGAGATTTTGTCCCGTTTTTTTGCGTCTTCGTGTCCACCATAG

Coding sequence (CDS)

ATGGCCAATCGGTTGAAGTTCCTTAGTAGAAGAGAGACCAGTAAGGCTTTGAACAAGAGCCATGAAATTCCGAGGTTGAGTATGAATGATCTTTGGCGATGTAAGATAAATAATGACTGGATTATTACCTTTACAACCTGTTTGGGTCTAATTCAAATATCGCAAAGATCCTCCGCCTCTGAATGGGTTTCTACTTCTACATCTTTTTCACTGGTTGATGCGGCGGTGAAAGTAAAGGACCTTCAAGTTCAGTCTATAAGGATAAATTACGCTCAGAAACCCTCGCTCTCCCCAAGCCAAGGCGAACGTTTTAAGGTTCCAGTTCATTTTGTTCCACATTTCTGGGAGATTTTGTCCCGTTTTTTTGCGTCTTCGTGTCCACCATAG

Protein sequence

MANRLKFLSRRETSKALNKSHEIPRLSMNDLWRCKINNDWIITFTTCLGLIQISQRSSASEWVSTSTSFSLVDAAVKVKDLQVQSIRINYAQKPSLSPSQGERFKVPVHFVPHFWEILSRFFASSCPP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo11535Spo11535gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo11535.1Spo11535.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11535.1.CDS.4Spo11535.1.CDS.4CDS
Spo11535.1.CDS.3Spo11535.1.CDS.3CDS
Spo11535.1.CDS.2Spo11535.1.CDS.2CDS
Spo11535.1.CDS.1Spo11535.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11535.1.exon.4Spo11535.1.exon.4exon
Spo11535.1.exon.3Spo11535.1.exon.3exon
Spo11535.1.exon.2Spo11535.1.exon.2exon
Spo11535.1.exon.1Spo11535.1.exon.1exon


Homology
The following BLAST results are available for this feature:
BLAST of Spo11535.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11535.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11535.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11535.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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