Spo11598.1 (mRNA) | SpinachBase

Overview


Name	Spo11598.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Ring finger protein, putative
Location	chr6 : 39771179 .. 39775067 (-)
Sequence length	1232

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCCTCTCTTTTTGTCTCTAAATATCATACTTCAAAACTGTGTGCATTTTAAATTAGAAAAAAAATATTAAAATGGGGAGACATGAAGATGAAATTCCTGCAAATCCAAATTTATATCCAGAAGAGCTACAACTTAAATTGTATCAAGCTTTTATATTCTCAATCCCAATATTATTTTCCATAATTTTGTTTCTTTTATTTTATCTGTTTTATCTCAAGAGAAGGGCCAACAATAATTTGTCAGTACAACCCTCGAGATTACAACAGTCTGCCTCTTTCCTTTCCCCAGTAAGATTTCCTCACTTCTTTCCTTACTATTTTTAGTAAGTATATGATCACGTTTCAAAATTGTTTTGTATTGCTTAATTTCGAGCAAATTTGTGTTGTTTTACTTACACTCGAGAAAANAAAAAAAAAAAAAAAAAAAAAAAAAACACTCTTATTAATCGGACTTTTTTAAGTCCAACCTTGAAAATCTTGTTTTCCTAAATTATATACGGAATACTGTTATGAGGTTTTTCTAGTTGTATAGATGACGAGTTTTGAAATTTAACACGTGTGATTGGACTAATTAAGTATAACAACGATGTAATTTTGGCGTATAATATTGATGTTTCCTTTGTATTTAGTTCAACATTAATCTATGCATTACGTACTAAGTTAGGTGATAATGATATAGTCCAATATTTATATATAAAAAGTTTATTTATGGTCTTTTTTTTGTTGGGTTGTTAGCCATGGAGTGTGGGGATCAAAGGAGAGATGAAAGACAAGCTACAAGTAATCCAATTTGATGAAGAACAAAGAGCAAGAGATTCACTGTAAGTAAATGATTAATTTTTTACTGTGCTTAGTCTAATTAACACAATGATCAAAGTTTTATTAATTTTAAAATGCTGAAGATAATATCAAGCTTTTATGAGTTAGTGATTGTGTCACTTCTTTAAATTACCTTCCAAAAAAGTACATGCTTTATTTATTTTCTTGTTTTATTTTATGCTGATGTGTTAAGTCTAGGTGGCTAAAATGTGTTTAATTAGTGGAGGTTTTAACTTTTAATTAAGCATAAATAAATAAATTATATTCTTATTTCTTGCCCTCTCAATCTAATGAAATCCCAAAAGAATATTTAATTGCAAGATAGACAGGTAGTGATAAAGCGATATAAAAGAGGCTATACAAATGTTCAATACACAACGTTATTATCTATGGTGAAAAGAAGTTTTATTTGACTCAACAGTTATGTACGTAATATTTGTTAGATTCAAATATTTATGTATATGACGTATGGATTTTTATCATTGAATTAATTTGATTATAAAAAAAGGTAGTCAGATAGTGATAAGATGAGTTTTTCTTGTCCAGATGAGCCATAAGAGCATTACAAGTTACAAATCACGGGATAAGGGAATTCGAACATATGACCTATCTTTATCTGATGTTTACCAATAAGAAATAGACCAATACCTCGTTGGTAGGGATGAAAAAATGAAATATGATTACACATCATCATTATCATGATATAATTATGGGTATAACATAAAGTTTTGATACTACTATCAACTCGATCAGTGGAACTTTCATGTGAAAGAAAAAGTCACTCTTCTACTCAACTCCACTTAGCTTTTTGGTGCATATATATGGAAGAATTATGCAGTGACGCATTTGTTAGATTCGCACTATTTTTGCTGTAAAACTTTTAAGGTAAAATATAGACATAACAAGTAAAAAAAGACAAGAAACACAAGTACGTATCACATCTTATGAAGGTTGCTCCACAAAATTTGTCTTTGGCCTCAATTGAAGAAATGACAGAATATTTGCACTAGTGTCACGTACAAGCATAGAAGTGTCATTTCTTACCTGATTTGATGATTAGACTAATTGCCTAATCGTTAGGTAGATAAAAGACCCCAAGCGAAATACTAATTCTATTAAGTGCTTACTTTTATCTCTTTGTTTAACCAAAAGTTAACTCTAATTTGTTTCATTTCAAACATATTGGTAAAATTTTGTTGGTGTTACCTGCCTTACTAGTTAGGCAAATAGACCTTTTCTGTATAAATACAAACGTTACATACGTTATACATATGATATGTTTAGGGATGACAATCACATCCGAGTCCGATCCGATCCGAAGGAAAAAATCCGATCCAAATTCGTGAAAAATAATACTTCCTCTGTTCCAGATTAGTTGTTACACTTTCCTTTTTCGTCCGTCCAGATTAGTTGTTACACTTCTAAATTAGGAATGACCCCACAATTATTATATTGTCTCTCTTCCCACTATTTTTTTTTGTCCCCACACCCTCTCTCGTTCAATTAAAAGAATACCCCACTAACTCCTATCACATCCACTTTTTCAATAAAATAACAATTGATAATTAACCAAACAACTATTTATCACCTAAAACTTTGTGCAAAGGTAAGTGTAACAACTAATCTGGGACGGAGGGAGTATGAATCTGAATCCGATTAAAAATATCGGAATCCGAATGGATATGGATCGGATATGGAGTCTGCAGAGAATTCGACCCGAAAATATTTCAAAGTGTATTATTTTCATACATAACTTTTTTTCAAAAGGAAGTTCCCAATTTAATCTAATATATTTAATTAAAGCGCGTATATTTGTACTTTATTAATTTATTAGAAACTCATTAGATTTTGGTAAATGAGAAATAGGATGTCTAATATATTTTAGAATTAAAAAAATACAAGTTCTATGTAAGTAAAGTTAACGCATGATTATGGATATGCATGGATGCAATTTGGATTTGGATATGGATTCGGATATGGATATGGATATGGATTCGGATTTGGATATGGATACAATTTTAGAGTATGGATTTTTAACGGATTTGGATATGGATGCAATTTTTGAGTCCGAATTTTAAATGGAACGGATTCGGAGTTTACTACATCCAACCCGATTCCGATCCATTACCATTCCTAGATATGTCCCACCGATGCGCAAAATAATTTTCACAAATCTTGATCTAACCCTATGCTATTTGTTTGCCCTCCACAGATGTTGTGTATGCTTGGGAGAGTTTGTGTTGAAAGAGGAGCTAAGACGATTGCCACTATGCAAACACGTGTTCCATGGTGATTGCATCCGTCTATGGCTCCGAACCAATGCCACGTGTCCTCTATGCAGGTGCACTGTCATACCTGCACTGAAAATGGGTCGTCCTGTTGGGCTTGGGCCAGACCATATTACCCAAGGGAATGATAACCCTGGCCCGCAGCATGAGCAAGTAAATGATGGAAGTAGTAGTTCGGTTGTGCTAAATAATTCAAGACCAAGAGAGCATGTAGTTCAAATTGGAGAGGAACCATCTTCCAATAGTAGCAATACTTCATAAAAATTAACGTCTAATATAATTCTAACTTCAACCAAAGTAATTTGCCAATATATAATGATCAATTGATCATCATCCAATTCGGTTACTGATATCGGGAGTGTTAATTTCCTCTTGAGGAGATAAAGAAGAACTATTGAGCATATACGACTGTGGTGGTACCTTGAATAGTTGTACGTGGCAATATCTGAGACGACTATGCATGGGATATGGCGATATATGTTTATGTTGGTGTATATTTTCGGTGACTTGTAATGTGGTGTTTTTTTCACCTAAGTGTGGTAGTGTGATGTACAAAAATTTTAGTGTGTCTTTTGAGGAGTCAAGGAACTAACATGGTTCCTGGTGTGGTCTATACGGAGGAGGTTGACCCAAAGTTTTGTAGCTTAATTAGGATGAAATTTGAATGAAATTGAATAAAAATTTCAACTTGTGCATTCAATTGATGATCACAATTCCTAAGCAATGTATTATTATTTACTAATCATAATTTCTAAGCAATGTATTACTAATCAAGATTACG

mRNA sequence

CTCCCTCTCTTTTTGTCTCTAAATATCATACTTCAAAACTGTGTGCATTTTAAATTAGAAAAAAAATATTAAAATGGGGAGACATGAAGATGAAATTCCTGCAAATCCAAATTTATATCCAGAAGAGCTACAACTTAAATTGTATCAAGCTTTTATATTCTCAATCCCAATATTATTTTCCATAATTTTGTTTCTTTTATTTTATCTGTTTTATCTCAAGAGAAGGGCCAACAATAATTTGTCAGTACAACCCTCGAGATTACAACAGTCTGCCTCTTTCCTTTCCCCACCATGGAGTGTGGGGATCAAAGGAGAGATGAAAGACAAGCTACAAGTAATCCAATTTGATGAAGAACAAAGAGCAAGAGATTCACTATGTTGTGTATGCTTGGGAGAGTTTGTGTTGAAAGAGGAGCTAAGACGATTGCCACTATGCAAACACGTGTTCCATGGTGATTGCATCCGTCTATGGCTCCGAACCAATGCCACGTGTCCTCTATGCAGGTGCACTGTCATACCTGCACTGAAAATGGGTCGTCCTGTTGGGCTTGGGCCAGACCATATTACCCAAGGGAATGATAACCCTGGCCCGCAGCATGAGCAAGTAAATGATGGAAGTAGTAGTTCGGTTGTGCTAAATAATTCAAGACCAAGAGAGCATGTAGTTCAAATTGGAGAGGAACCATCTTCCAATAGTAGCAATACTTCATAAAAATTAACGTCTAATATAATTCTAACTTCAACCAAAGTAATTTGCCAATATATAATGATCAATTGATCATCATCCAATTCGGTTACTGATATCGGGAGTGTTAATTTCCTCTTGAGGAGATAAAGAAGAACTATTGAGCATATACGACTGTGGTGGTACCTTGAATAGTTGTACGTGGCAATATCTGAGACGACTATGCATGGGATATGGCGATATATGTTTATGTTGGTGTATATTTTCGGTGACTTGTAATGTGGTGTTTTTTTCACCTAAGTGTGGTAGTGTGATGTACAAAAATTTTAGTGTGTCTTTTGAGGAGTCAAGGAACTAACATGGTTCCTGGTGTGGTCTATACGGAGGAGGTTGACCCAAAGTTTTGTAGCTTAATTAGGATGAAATTTGAATGAAATTGAATAAAAATTTCAACTTGTGCATTCAATTGATGATCACAATTCCTAAGCAATGTATTATTATTTACTAATCATAATTTCTAAGCAATGTATTACTAATCAAGATTACG

Coding sequence (CDS)

ATGGGGAGACATGAAGATGAAATTCCTGCAAATCCAAATTTATATCCAGAAGAGCTACAACTTAAATTGTATCAAGCTTTTATATTCTCAATCCCAATATTATTTTCCATAATTTTGTTTCTTTTATTTTATCTGTTTTATCTCAAGAGAAGGGCCAACAATAATTTGTCAGTACAACCCTCGAGATTACAACAGTCTGCCTCTTTCCTTTCCCCACCATGGAGTGTGGGGATCAAAGGAGAGATGAAAGACAAGCTACAAGTAATCCAATTTGATGAAGAACAAAGAGCAAGAGATTCACTATGTTGTGTATGCTTGGGAGAGTTTGTGTTGAAAGAGGAGCTAAGACGATTGCCACTATGCAAACACGTGTTCCATGGTGATTGCATCCGTCTATGGCTCCGAACCAATGCCACGTGTCCTCTATGCAGGTGCACTGTCATACCTGCACTGAAAATGGGTCGTCCTGTTGGGCTTGGGCCAGACCATATTACCCAAGGGAATGATAACCCTGGCCCGCAGCATGAGCAAGTAAATGATGGAAGTAGTAGTTCGGTTGTGCTAAATAATTCAAGACCAAGAGAGCATGTAGTTCAAATTGGAGAGGAACCATCTTCCAATAGTAGCAATACTTCATAA

Protein sequence

MGRHEDEIPANPNLYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRANNNLSVQPSRLQQSASFLSPPWSVGIKGEMKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCKHVFHGDCIRLWLRTNATCPLCRCTVIPALKMGRPVGLGPDHITQGNDNPGPQHEQVNDGSSSSVVLNNSRPREHVVQIGEEPSSNSSNTS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo11598	Spo11598	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo11598.1	Spo11598.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11598.1.utr5p.1	Spo11598.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11598.1.CDS.3	Spo11598.1.CDS.3	CDS
Spo11598.1.CDS.2	Spo11598.1.CDS.2	CDS
Spo11598.1.CDS.1	Spo11598.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11598.1.utr3p.1	Spo11598.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11598.1.exon.3	Spo11598.1.exon.3	exon
Spo11598.1.exon.2	Spo11598.1.exon.2	exon
Spo11598.1.exon.1	Spo11598.1.exon.1	exon

Homology

[Close]

BLAST of Spo11598.1 vs. NCBI nr
Match: gi|731367392|ref|XP_010695586.1| (PREDICTED: RING-H2 zinc finger protein RHA4a [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 320.1 bits (819), Expect = 2.900e-84
Identity = 167/220 (75.91%), Postives = 187/220 (85.00%), Query Frame = 1


		  
Query: 1   MGRHE-DEIPANPNLYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRANNNLSVQ 60
           MGRHE D IP NPNLYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRANNN+SV 
Sbjct: 1   MGRHEEDPIPPNPNLYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRANNNMSVH 60

Query: 61  PSRLQQSA----SFLSPPWSVGIKGEMKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEEL 120
           P RLQQSA    SFLSPPWS+GIKGE+KDKLQ ++FDEE +ARDSLCCVCLGEF LKEEL
Sbjct: 61  PPRLQQSAHHSVSFLSPPWSLGIKGEIKDKLQAVEFDEELKARDSLCCVCLGEFELKEEL 120

Query: 121 RRLPLCKHVFHGDCIRLWLRTNATCPLCRCTVIPALKMGRPVGLGPDHITQGNDN--PGP 180
           R+LP+CKH+FHGDCIR WLRTNATCPLCRC V+PALKM RP GL PD  +  NDN  P  
Sbjct: 121 RQLPMCKHIFHGDCIRHWLRTNATCPLCRCAVLPALKMDRPSGLEPDITSHENDNIAPQA 180

Query: 181 QHEQVN-DGSSSSVVL-NNSRPREHVVQIGEEPSSNSSNT 212
           QHEQ N + S+SS+ + N+SR  EHV+QI +EPSS+S+NT
Sbjct: 181 QHEQENVERSTSSLDMDNSSRSEEHVIQIVDEPSSSSNNT 220

[Close]

BLAST of Spo11598.1 vs. NCBI nr
Match: gi|902196016|gb|KNA13014.1| (hypothetical protein SOVF_120620 [Spinacia oleracea])

HSP 1 Score: 274.2 bits (700), Expect = 1.900e-70
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1


		  
Query: 82  MKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCKHVFHGDCIRLWLRTNATCP 141
           MKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCKHVFHGDCIRLWLRTNATCP
Sbjct: 1   MKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCKHVFHGDCIRLWLRTNATCP 60

Query: 142 LCRCTVIPALKMGRPVGLGPDHITQGNDNPGPQHEQVNDGSSSSVVLNNSRPREHVVQIG 201
           LCRCTVIPALKMGRPVGLGPDHITQGNDNPGPQHEQVNDGSSSSVVLNNSRPREHVVQIG
Sbjct: 61  LCRCTVIPALKMGRPVGLGPDHITQGNDNPGPQHEQVNDGSSSSVVLNNSRPREHVVQIG 120

Query: 202 EEPSSNSSNTS 213
           EEPSSNSSNTS
Sbjct: 121 EEPSSNSSNTS 131

[Close]

BLAST of Spo11598.1 vs. NCBI nr
Match: gi|870844638|gb|KMS97559.1| (hypothetical protein BVRB_5g125830 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 224.6 bits (571), Expect = 1.700e-55
Identity = 114/164 (69.51%), Postives = 134/164 (81.71%), Query Frame = 1


		  
Query: 56  LSVQPSRLQQSA----SFLSPPWSVGIKGEMKDKLQVIQFDEEQRARDSLCCVCLGEFVL 115
           +SV P RLQQSA    SFLSPPWS+GIKGE+KDKLQ ++FDEE +ARDSLCCVCLGEF L
Sbjct: 1   MSVHPPRLQQSAHHSVSFLSPPWSLGIKGEIKDKLQAVEFDEELKARDSLCCVCLGEFEL 60

Query: 116 KEELRRLPLCKHVFHGDCIRLWLRTNATCPLCRCTVIPALKMGRPVGLGPDHITQGNDN- 175
           KEELR+LP+CKH+FHGDCIR WLRTNATCPLCRC V+PALKM RP GL PD  +  NDN 
Sbjct: 61  KEELRQLPMCKHIFHGDCIRHWLRTNATCPLCRCAVLPALKMDRPSGLEPDITSHENDNI 120

Query: 176 -PGPQHEQVN-DGSSSSVVL-NNSRPREHVVQIGEEPSSNSSNT 212
            P  QHEQ N + S+SS+ + N+SR  EHV+QI +EPSS+S+NT
Sbjct: 121 APQAQHEQENVERSTSSLDMDNSSRSEEHVIQIVDEPSSSSNNT 164

[Close]

BLAST of Spo11598.1 vs. NCBI nr
Match: gi|225426249|ref|XP_002264149.1| (PREDICTED: RING-H2 zinc finger protein RHA4a [Vitis vinifera])

HSP 1 Score: 216.1 bits (549), Expect = 6.000e-53
Identity = 111/175 (63.43%), Postives = 130/175 (74.29%), Query Frame = 1


		  
Query: 7   EIPANPNLYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRANNNLS---VQPSRL 66
           + P   +LYPE LQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRA+ + S   + PS +
Sbjct: 5   QTPTPTHLYPEALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASTSSSTAPILPSSM 64

Query: 67  QQSASFLSPPWSVGIKGEMKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCKH 126
            Q+ASFLSP   +G+KGE+K KL  I FD+E +ARDSLCCVCLGEF +KEEL ++P CKH
Sbjct: 65  NQAASFLSPSCEIGLKGELKGKLPTILFDDELKARDSLCCVCLGEFEIKEELHQVPSCKH 124

Query: 127 VFHGDCIRLWLRTNATCPLCRCTVIPALKMGRPVG-LGPDHITQGNDNPGPQHEQ 178
           VFH DCI  WLRTN+TCPLCRC+V P  K G PV  +  +H    N N   QH Q
Sbjct: 125 VFHADCIYHWLRTNSTCPLCRCSVFPNTKAGNPVSPVRSEHPDNQNSN---QHRQ 176

[Close]

BLAST of Spo11598.1 vs. NCBI nr
Match: gi|703140651|ref|XP_010107276.1| (RING-H2 zinc finger protein RHA4a [Morus notabilis])

HSP 1 Score: 200.3 bits (508), Expect = 3.400e-48
Identity = 96/148 (64.86%), Postives = 117/148 (79.05%), Query Frame = 1


		  
Query: 9   PANPNLYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRANNNLSV------QPSR 68
           P  P+LYP+ LQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRA+N+ S+      +P R
Sbjct: 7   PTPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASNSTSISFPPLPRPRR 66

Query: 69  LQQSASFLSPPWSVGIKGEMKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCK 128
             Q+ +++S P    +K E+KD+L ++ FDEE R RDS CCVCLGEFV+KEEL ++P CK
Sbjct: 67  SHQTTTYVSSPCQFDLKVELKDELPIVLFDEELRKRDSQCCVCLGEFVVKEELLQVPSCK 126

Query: 129 HVFHGDCIRLWLRTNATCPLCRCTVIPA 151
           H+FH DCI LWL TN TCPLCRC+V+PA
Sbjct: 127 HIFHIDCIHLWLHTNTTCPLCRCSVLPA 154

[Close]

BLAST of Spo11598.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R250_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_120620 PE=4 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 1.300e-70
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1


		  
Query: 82  MKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCKHVFHGDCIRLWLRTNATCP 141
           MKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCKHVFHGDCIRLWLRTNATCP
Sbjct: 1   MKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCKHVFHGDCIRLWLRTNATCP 60

Query: 142 LCRCTVIPALKMGRPVGLGPDHITQGNDNPGPQHEQVNDGSSSSVVLNNSRPREHVVQIG 201
           LCRCTVIPALKMGRPVGLGPDHITQGNDNPGPQHEQVNDGSSSSVVLNNSRPREHVVQIG
Sbjct: 61  LCRCTVIPALKMGRPVGLGPDHITQGNDNPGPQHEQVNDGSSSSVVLNNSRPREHVVQIG 120

Query: 202 EEPSSNSSNTS 213
           EEPSSNSSNTS
Sbjct: 121 EEPSSNSSNTS 131

[Close]

BLAST of Spo11598.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B8H5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g125830 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.200e-55
Identity = 114/164 (69.51%), Postives = 134/164 (81.71%), Query Frame = 1


		  
Query: 56  LSVQPSRLQQSA----SFLSPPWSVGIKGEMKDKLQVIQFDEEQRARDSLCCVCLGEFVL 115
           +SV P RLQQSA    SFLSPPWS+GIKGE+KDKLQ ++FDEE +ARDSLCCVCLGEF L
Sbjct: 1   MSVHPPRLQQSAHHSVSFLSPPWSLGIKGEIKDKLQAVEFDEELKARDSLCCVCLGEFEL 60

Query: 116 KEELRRLPLCKHVFHGDCIRLWLRTNATCPLCRCTVIPALKMGRPVGLGPDHITQGNDN- 175
           KEELR+LP+CKH+FHGDCIR WLRTNATCPLCRC V+PALKM RP GL PD  +  NDN 
Sbjct: 61  KEELRQLPMCKHIFHGDCIRHWLRTNATCPLCRCAVLPALKMDRPSGLEPDITSHENDNI 120

Query: 176 -PGPQHEQVN-DGSSSSVVL-NNSRPREHVVQIGEEPSSNSSNT 212
            P  QHEQ N + S+SS+ + N+SR  EHV+QI +EPSS+S+NT
Sbjct: 121 APQAQHEQENVERSTSSLDMDNSSRSEEHVIQIVDEPSSSSNNT 164

[Close]

BLAST of Spo11598.1 vs. UniProtKB/TrEMBL
Match: W9S747_9ROSA (RING-H2 zinc finger protein RHA4a OS=Morus notabilis GN=L484_007837 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 2.400e-48
Identity = 96/148 (64.86%), Postives = 117/148 (79.05%), Query Frame = 1


		  
Query: 9   PANPNLYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRANNNLSV------QPSR 68
           P  P+LYP+ LQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRA+N+ S+      +P R
Sbjct: 7   PTPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASNSTSISFPPLPRPRR 66

Query: 69  LQQSASFLSPPWSVGIKGEMKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCK 128
             Q+ +++S P    +K E+KD+L ++ FDEE R RDS CCVCLGEFV+KEEL ++P CK
Sbjct: 67  SHQTTTYVSSPCQFDLKVELKDELPIVLFDEELRKRDSQCCVCLGEFVVKEELLQVPSCK 126

Query: 129 HVFHGDCIRLWLRTNATCPLCRCTVIPA 151
           H+FH DCI LWL TN TCPLCRC+V+PA
Sbjct: 127 HIFHIDCIHLWLHTNTTCPLCRCSVLPA 154

[Close]

BLAST of Spo11598.1 vs. UniProtKB/TrEMBL
Match: A0A059CG75_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01770 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 7.100e-45
Identity = 103/200 (51.50%), Postives = 135/200 (67.50%), Query Frame = 1


		  
Query: 1   MGRHEDEIPANPNLYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRANNNLSVQP 60
           MG  +    + P+LYP+ LQLKLYQAFIFSIPILFSIILFLLFYLFYLK+RA++ LS  P
Sbjct: 1   MGLPQSPPISPPHLYPQALQLKLYQAFIFSIPILFSIILFLLFYLFYLKKRASS-LSSPP 60

Query: 61  SRLQQSAS----FLSPPWSVGIKGEMKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELR 120
             L  S++    ++S P  VG+KGE+KDKL ++ FDEE  A DS CCVCLGEF +KEEL 
Sbjct: 61  PALPVSSNRAPPYVSSPCQVGLKGELKDKLPIVLFDEELGANDSQCCVCLGEFEMKEELL 120

Query: 121 RLPLCKHVFHGDCIRLWLRTNATCPLCRCTVIPALKMGRPVGLGPDHITQGNDNPGPQHE 180
           ++P CKHVFH +CI  WL +NATCPLCRC+VIPA              + G+  P    +
Sbjct: 121 QVPSCKHVFHINCIHHWLHSNATCPLCRCSVIPAATAK----------SHGSPQPHQDGQ 180

Query: 181 QVNDGSSSSVVLNNSRPREH 197
             +D + + +  +  +P++H
Sbjct: 181 SSSDPAQAFIRPDLEQPQQH 189

[Close]

BLAST of Spo11598.1 vs. UniProtKB/TrEMBL
Match: V4TRL2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10024464mg PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.300e-43
Identity = 99/179 (55.31%), Postives = 123/179 (68.72%), Query Frame = 1


		  
Query: 12  PNLYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRAN--NNLSVQPSRLQQSASF 71
           P+LYP+ +QLKLYQAFIFSIPILFSIILFLLFYLFYLKRRA+  ++  + P+   Q+ ++
Sbjct: 11  PHLYPQAIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASVLSSTPIVPTSSNQATTY 70

Query: 72  L-SPPWSVGIKGEMKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCKHVFHGD 131
           + S    +G KGE+KD+L  I FDEE R RDS CCVCLGEF +KEEL ++P CKHVFH +
Sbjct: 71  VHSTCEHIGWKGEIKDRLPTILFDEELRTRDSQCCVCLGEFEIKEELLQVPSCKHVFHVE 130

Query: 132 CIRLWLRTNATCPLCRCTVIPALKMGRP------VGLGPDHITQGNDN----PGPQHEQ 178
           CI  WL +N TCPLCRC+++P  K+  P        L  D  T  N N    P  Q EQ
Sbjct: 131 CIHYWLHSNTTCPLCRCSIVPITKLYNPATASVVTRLLQDSGTNSNQNQQNTPSEQQEQ 189

[Close]

BLAST of Spo11598.1 vs. ExPASy Swiss-Prot
Match: RHA4A_ARATH (Probable E3 ubiquitin-protein ligase RHA4A OS=Arabidopsis thaliana GN=RHA4A PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.900e-43
Identity = 91/148 (61.49%), Postives = 110/148 (74.32%), Query Frame = 1


		  
Query: 5   EDEIPANPNLYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRANNNLSVQP---- 64
           + + P  P+LYP+ +QLKLYQAFIFSIPILFSIILFLLFYLFYLKRRA++  S  P    
Sbjct: 3   DPQSPITPHLYPQAIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPSPMILP 62

Query: 65  -SRLQQSASFLSPPWSVGIKGEMKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLP 124
            S   Q++S L     + +K E+KDKL V+ F+EE   RDSLCCVCLGEF LKEEL  +P
Sbjct: 63  VSSSHQTSSHLPSVCLLDVKVELKDKLHVVLFNEELGTRDSLCCVCLGEFELKEELVEMP 122

Query: 125 LCKHVFHGDCIRLWLRTNATCPLCRCTV 148
           LCKH+FH DCI LWL ++ TCPLCR +V
Sbjct: 123 LCKHIFHLDCIHLWLYSHNTCPLCRSSV 150

[Close]

BLAST of Spo11598.1 vs. ExPASy Swiss-Prot
Match: ATL58_ARATH (RING-H2 finger protein ATL58 OS=Arabidopsis thaliana GN=ATL58 PE=2 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.200e-24
Identity = 74/204 (36.27%), Postives = 107/204 (52.45%), Query Frame = 1


		  
Query: 9   PANPNLYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRANNNLSVQPSRLQQSAS 68
           P N +      +LKLYQAFIFS+PI F+ I+  LFYL YL RR++++LS    R      
Sbjct: 8   PENYSAATSSPELKLYQAFIFSVPICFTFIILFLFYLIYL-RRSSSDLSSLGMRTTFIPG 67

Query: 69  FLSPPWSVGIKGEMKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCKHVFHGD 128
                  +G+  E+++ L ++ F E     DS C VCLG++   ++L+++P+CKH FH D
Sbjct: 68  NSLSTIELGLSKELREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMD 127

Query: 129 CIRLWLRTNATCPLCRCTVIPALKMGRPVGLGPDHITQGNDNPGPQHEQVNDGSSSSVVL 188
           CI LWL ++ TCPLCR  +IP+               Q  D+P P     ++  SS    
Sbjct: 128 CIDLWLTSHTTCPLCRLALIPS------------RSRQSQDDPVPSLVSPDEEVSSQ--- 187

Query: 189 NNSRPREHVVQIGEEPSSNSSNTS 213
             S P  H V +  +P S   N S
Sbjct: 188 PESEPVNHRV-VSTQPESEPVNHS 194

[Close]

BLAST of Spo11598.1 vs. ExPASy Swiss-Prot
Match: ATL7_ARATH (RING-H2 finger protein ATL7 OS=Arabidopsis thaliana GN=ATL7 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 9.300e-22
Identity = 68/212 (32.08%), Postives = 112/212 (52.83%), Query Frame = 1


		  
Query: 12  PNLYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRANNN-----LSVQPSRLQQS 71
           P+   E  +LKLYQAFIFS+PI F+ I+  + Y+ YL+R +  N     L ++      +
Sbjct: 17  PSNSTESEKLKLYQAFIFSVPICFTFIVLFVLYVIYLRRNSTTNVDWSSLGMRGGTFVPT 76

Query: 72  ASFLSPPWSVGIKGEMKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCKHVFH 131
            + LS    +G+  ++++ L V+ + E    +DS C VCLG++  +E+L+++P C H FH
Sbjct: 77  NNNLSTA-ELGLSKDIREMLPVVIYKESFIVKDSQCSVCLGDYQAEEKLQQMPSCGHTFH 136

Query: 132 GDCIRLWLRTNATCPLCRCTVIPALKMGRPVGLGPDHITQGNDNPGPQHEQVNDGSSSSV 191
            +CI LWL ++ TCPLCR ++IP   +           +  N N G    Q +  S++  
Sbjct: 137 MECIDLWLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSIENSNGGEASTQPDSQSATEA 196

Query: 192 VLN------NSRPREHVVQIGEEPSSNSSNTS 213
           + +       +R  + V +  EE   NS  TS
Sbjct: 197 ISHTDDVEEGNRDSQEVSKETEENDRNSVGTS 227

[Close]

BLAST of Spo11598.1 vs. ExPASy Swiss-Prot
Match: ATL59_ARATH (E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana GN=ATL59 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.200e-14
Identity = 60/202 (29.70%), Postives = 100/202 (49.50%), Query Frame = 1


		  
Query: 27  FIFSIPILFSIILFLLFYLFYLKRRANNNLSVQ------PSRLQQSASFLSPPWSVGIKG 86
           FI  +PI   +IL +L  L+ ++R +N N+         P+    S + L      G+  
Sbjct: 24  FIVCVPIC--VILIVLLVLYIMRRNSNTNVDWSSLGGFVPTNNNLSTAEL------GLSK 83

Query: 87  EMKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCKHVFHGDCIRLWLRTNATC 146
           ++++ L ++ + E     D+ C VCLG++  +E+L+++P C H FH +CI LWL ++ TC
Sbjct: 84  DIREMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTC 143

Query: 147 PLCRCTVIPALKMGRPVGLGPDHI----TQGNDNPGPQHEQVNDGSSSSVVLN------N 206
           PLCR ++IP       V L    I    +  N N G    Q +  S++  +++       
Sbjct: 144 PLCRLSLIPK----PSVDLSHQSIEIVSSIENTNGGEASTQPDSQSATEAIIHIDDVEEG 203

Query: 207 SRPREHVVQIGEEPSSNSSNTS 213
           +R    VV+  EE   NS  TS
Sbjct: 204 NRDSIEVVKESEENDRNSVGTS 213

[Close]

BLAST of Spo11598.1 vs. ExPASy Swiss-Prot
Match: ATL1_ARATH (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.500e-11
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1


		  
Query: 85  KLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCKHVFHGDCIRLWLRTNATCPLCR 144
           K  V+  +E+Q      C VCL EF   E+LR +P C HVFH DCI +WL+ NA CPLCR
Sbjct: 117 KRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCR 176

Query: 145 CTV 148
            +V
Sbjct: 177 TSV 179

[Close]

BLAST of Spo11598.1 vs. TAIR (Arabidopsis)
Match: AT4G24015.1 (RING/U-box superfamily protein)

HSP 1 Score: 177.2 bits (448), Expect = 1.100e-44
Identity = 91/148 (61.49%), Postives = 110/148 (74.32%), Query Frame = 1


		  
Query: 5   EDEIPANPNLYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRANNNLSVQP---- 64
           + + P  P+LYP+ +QLKLYQAFIFSIPILFSIILFLLFYLFYLKRRA++  S  P    
Sbjct: 3   DPQSPITPHLYPQAIQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSPSPMILP 62

Query: 65  -SRLQQSASFLSPPWSVGIKGEMKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLP 124
            S   Q++S L     + +K E+KDKL V+ F+EE   RDSLCCVCLGEF LKEEL  +P
Sbjct: 63  VSSSHQTSSHLPSVCLLDVKVELKDKLHVVLFNEELGTRDSLCCVCLGEFELKEELVEMP 122

Query: 125 LCKHVFHGDCIRLWLRTNATCPLCRCTV 148
           LCKH+FH DCI LWL ++ TCPLCR +V
Sbjct: 123 LCKHIFHLDCIHLWLYSHNTCPLCRSSV 150

[Close]

BLAST of Spo11598.1 vs. TAIR (Arabidopsis)
Match: AT1G33480.1 (RING/U-box superfamily protein)

HSP 1 Score: 114.8 bits (286), Expect = 6.600e-26
Identity = 74/204 (36.27%), Postives = 107/204 (52.45%), Query Frame = 1


		  
Query: 9   PANPNLYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRANNNLSVQPSRLQQSAS 68
           P N +      +LKLYQAFIFS+PI F+ I+  LFYL YL RR++++LS    R      
Sbjct: 8   PENYSAATSSPELKLYQAFIFSVPICFTFIILFLFYLIYL-RRSSSDLSSLGMRTTFIPG 67

Query: 69  FLSPPWSVGIKGEMKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCKHVFHGD 128
                  +G+  E+++ L ++ F E     DS C VCLG++   ++L+++P+CKH FH D
Sbjct: 68  NSLSTIELGLSKELREMLPIVVFKESFTVMDSQCSVCLGDYQPNDKLQQIPVCKHTFHMD 127

Query: 129 CIRLWLRTNATCPLCRCTVIPALKMGRPVGLGPDHITQGNDNPGPQHEQVNDGSSSSVVL 188
           CI LWL ++ TCPLCR  +IP+               Q  D+P P     ++  SS    
Sbjct: 128 CIDLWLTSHTTCPLCRLALIPS------------RSRQSQDDPVPSLVSPDEEVSSQ--- 187

Query: 189 NNSRPREHVVQIGEEPSSNSSNTS 213
             S P  H V +  +P S   N S
Sbjct: 188 PESEPVNHRV-VSTQPESEPVNHS 194

[Close]

BLAST of Spo11598.1 vs. TAIR (Arabidopsis)
Match: AT4G10150.1 (RING/U-box superfamily protein)

HSP 1 Score: 105.1 bits (261), Expect = 5.200e-23
Identity = 68/212 (32.08%), Postives = 112/212 (52.83%), Query Frame = 1


		  
Query: 12  PNLYPEELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRANNN-----LSVQPSRLQQS 71
           P+   E  +LKLYQAFIFS+PI F+ I+  + Y+ YL+R +  N     L ++      +
Sbjct: 17  PSNSTESEKLKLYQAFIFSVPICFTFIVLFVLYVIYLRRNSTTNVDWSSLGMRGGTFVPT 76

Query: 72  ASFLSPPWSVGIKGEMKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCKHVFH 131
            + LS    +G+  ++++ L V+ + E    +DS C VCLG++  +E+L+++P C H FH
Sbjct: 77  NNNLSTA-ELGLSKDIREMLPVVIYKESFIVKDSQCSVCLGDYQAEEKLQQMPSCGHTFH 136

Query: 132 GDCIRLWLRTNATCPLCRCTVIPALKMGRPVGLGPDHITQGNDNPGPQHEQVNDGSSSSV 191
            +CI LWL ++ TCPLCR ++IP   +           +  N N G    Q +  S++  
Sbjct: 137 MECIDLWLTSHTTCPLCRLSLIPKPSLDLSHQSTEIVSSIENSNGGEASTQPDSQSATEA 196

Query: 192 VLN------NSRPREHVVQIGEEPSSNSSNTS 213
           + +       +R  + V +  EE   NS  TS
Sbjct: 197 ISHTDDVEEGNRDSQEVSKETEENDRNSVGTS 227

[Close]

BLAST of Spo11598.1 vs. TAIR (Arabidopsis)
Match: AT4G10160.1 (RING/U-box superfamily protein)

HSP 1 Score: 80.1 bits (196), Expect = 1.800e-15
Identity = 60/202 (29.70%), Postives = 100/202 (49.50%), Query Frame = 1


		  
Query: 27  FIFSIPILFSIILFLLFYLFYLKRRANNNLSVQ------PSRLQQSASFLSPPWSVGIKG 86
           FI  +PI   +IL +L  L+ ++R +N N+         P+    S + L      G+  
Sbjct: 24  FIVCVPIC--VILIVLLVLYIMRRNSNTNVDWSSLGGFVPTNNNLSTAEL------GLSK 83

Query: 87  EMKDKLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCKHVFHGDCIRLWLRTNATC 146
           ++++ L ++ + E     D+ C VCLG++  +E+L+++P C H FH +CI LWL ++ TC
Sbjct: 84  DIREMLPIVIYKESFTVNDTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTC 143

Query: 147 PLCRCTVIPALKMGRPVGLGPDHI----TQGNDNPGPQHEQVNDGSSSSVVLN------N 206
           PLCR ++IP       V L    I    +  N N G    Q +  S++  +++       
Sbjct: 144 PLCRLSLIPK----PSVDLSHQSIEIVSSIENTNGGEASTQPDSQSATEAIIHIDDVEEG 203

Query: 207 SRPREHVVQIGEEPSSNSSNTS 213
           +R    VV+  EE   NS  TS
Sbjct: 204 NRDSIEVVKESEENDRNSVGTS 213

[Close]

BLAST of Spo11598.1 vs. TAIR (Arabidopsis)
Match: AT1G04360.1 (RING/U-box superfamily protein)

HSP 1 Score: 71.2 bits (173), Expect = 8.400e-13
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1


		  
Query: 85  KLQVIQFDEEQRARDSLCCVCLGEFVLKEELRRLPLCKHVFHGDCIRLWLRTNATCPLCR 144
           K  V+  +E+Q      C VCL EF   E+LR +P C HVFH DCI +WL+ NA CPLCR
Sbjct: 117 KRDVVAGEEDQSKNSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCR 176

Query: 145 CTV 148
            +V
Sbjct: 177 TSV 179

The following BLAST results are available for this feature:

BLAST of Spo11598.1 vs. NCBI nr
BLAST of Spo11598.1 vs. UniProtKB/TrEMBL
BLAST of Spo11598.1 vs. ExPASy Swiss-Prot
BLAST of Spo11598.1 vs. TAIR (Arabidopsis)

BLAST of Spo11598.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|731367392\|ref\|XP_010695586.1\|	2.9e-84	75.9	PREDICTED: RING-H2 zinc finger...	[more]
gi\|902196016\|gb\|KNA13014.1\|	1.9e-70	100.	hypothetical protein SOVF_1206...	[more]
gi\|870844638\|gb\|KMS97559.1\|	1.7e-55	69.5	hypothetical protein BVRB_5g12...	[more]
gi\|225426249\|ref\|XP_002264149.1\|	6.0e-53	63.4	PREDICTED: RING-H2 zinc finger...	[more]
gi\|703140651\|ref\|XP_010107276.1\|	3.4e-48	64.8	RING-H2 zinc finger protein RH...	[more]

BLAST of Spo11598.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R250_SPIOL	1.3e-70	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8B8H5_BETVU	1.2e-55	69.5	Uncharacterized protein OS=Bet...	[more]
W9S747_9ROSA	2.4e-48	64.8	RING-H2 zinc finger protein RH...	[more]
A0A059CG75_EUCGR	7.1e-45	51.5	Uncharacterized protein OS=Euc...	[more]
V4TRL2_9ROSI	1.3e-43	55.3	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo11598.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RHA4A_ARATH	1.9e-43	61.4	Probable E3 ubiquitin-protein ...	[more]
ATL58_ARATH	1.2e-24	36.2	RING-H2 finger protein ATL58 O...	[more]
ATL7_ARATH	9.3e-22	32.0	RING-H2 finger protein ATL7 OS...	[more]
ATL59_ARATH	3.2e-14	29.7	E3 ubiquitin-protein ligase AT...	[more]
ATL1_ARATH	1.5e-11	50.7	RING-H2 finger protein ATL1 OS...	[more]

BLAST of Spo11598.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT4G24015.1	1.1e-44	61.4	RING/U-box superfamily protein	[more]
AT1G33480.1	6.6e-26	36.2	RING/U-box superfamily protein	[more]
AT4G10150.1	5.2e-23	32.0	RING/U-box superfamily protein	[more]
AT4G10160.1	1.8e-15	29.7	RING/U-box superfamily protein	[more]
AT1G04360.1	8.4e-13	50.7	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 102..144 score: 2.3
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 102..143 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 102..144 score: 11
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 99..147 score: 2.5
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 7..153 score: 5.1
None	No IPR available	PANTHER	PTHR22765:SF50	RING-H2 ZINC FINGER PROTEIN RHA4A	coord: 7..153 score: 5.1
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 84..150 score: 8.7

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding