Spo11657.1 (mRNA)

Overview
NameSpo11657.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionSerine/threonine-protein kinase (2.7.11.1)
Locationchr4 : 51152779 .. 51153392 (-)
Sequence length291
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTATTCAGTTTCAAAGAAATTACAGCAGCCACAAATAATTTTTCATTTTACAAGAAGCTTGGAGAGGGTGGGTATGGACCGGTTTATAAGGTATCCTTCAAAACCAATACCAAGTACATTTCCCTCACCACTTAAAAAATACATATATCTGTTTCTCCGGGGTAAGTTAAAGACAAATAGCAGTAAAGAGACTTTCAAAAGCTTCAAGGTAAGGATTTGAGCAGTTCAAGAATGAAGTTATGCTCACTGCAAAACTTCAGCATGTAAACTTGGTTAAGGTGCTGGGATTTTGCGTGGAAAGAGAGGAAAAAATGCTCATTTATGAATACCTTGCAATTAGCAGCTTGGATTTTTACCTTTTTGGTATAACTTTTGCTTGACTATGTTCTATGATGATATAAAATCTAGCTCAGGAACAAAGACATGAGCACATAACATTCTGGCAGCTGATAGATTCCTTTCCCCGTCTCTTAGCAGATCTTGTGGAACGTTTGCAGCTCAATTGGGGAAAGCATGCTCACATCATCAAAAAGAATAATTCAAGGCCTCTTATACCTGCAAGAATACTCAAGGCTAACCATCATTCACCGAGATCTAAAAGCCAATAA

mRNA sequence

ATGAAGGTATTCAGTTTCAAAGAAATTACAGCAGCCACAAATAATTTTTCATTTTACAAGAAGCTTGGAGAGGGTGGGTATGGACCGGTTTATAAGGAACAAAGACATGAGCACATAACATTCTGGCAGCTGATAGATTCCTTTCCCCGTCTCTTAGCAGATCTTGTGGAACGTTTGCAGCTCAATTGGGGAAAGCATGCTCACATCATCAAAAAGAATAATTCAAGGCCTCTTATACCTGCAAGAATACTCAAGGCTAACCATCATTCACCGAGATCTAAAAGCCAATAA

Coding sequence (CDS)

ATGAAGGTATTCAGTTTCAAAGAAATTACAGCAGCCACAAATAATTTTTCATTTTACAAGAAGCTTGGAGAGGGTGGGTATGGACCGGTTTATAAGGAACAAAGACATGAGCACATAACATTCTGGCAGCTGATAGATTCCTTTCCCCGTCTCTTAGCAGATCTTGTGGAACGTTTGCAGCTCAATTGGGGAAAGCATGCTCACATCATCAAAAAGAATAATTCAAGGCCTCTTATACCTGCAAGAATACTCAAGGCTAACCATCATTCACCGAGATCTAAAAGCCAATAA

Protein sequence

MKVFSFKEITAATNNFSFYKKLGEGGYGPVYKEQRHEHITFWQLIDSFPRLLADLVERLQLNWGKHAHIIKKNNSRPLIPARILKANHHSPRSKSQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo11657Spo11657gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo11657.1Spo11657.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11657.1.CDS.2Spo11657.1.CDS.2CDS
Spo11657.1.CDS.1Spo11657.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11657.1.exon.2Spo11657.1.exon.2exon
Spo11657.1.exon.1Spo11657.1.exon.1exon


Homology
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BLAST of Spo11657.1 vs. TAIR (Arabidopsis)
Match: AT1G11300.1 (protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding)

HSP 1 Score: 47.8 bits (112), Expect = 4.500e-6
Identity = 20/37 (54.05%), Postives = 27/37 (72.97%), Query Frame = 1 

		  

Query: 1   MKVFSFKEITAATNNFSFYKKLGEGGYGPVYKEQRHE 38
           + +F F+ + AATNNFS   KLG+GG+GPVYK +  E
Sbjct: 494 LPLFEFQVLAAATNNFSLRNKLGQGGFGPVYKGKLQE 530
The following BLAST results are available for this feature:
BLAST of Spo11657.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11657.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11657.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11657.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G11300.14.5e-654.0protein serine/threonine kinas... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011009Protein kinase-like domainunknownSSF56112Protein kinase-like (PK-like)coord: 2..37
score: 1.
NoneNo IPR availableGENE3D3.30.200.20coord: 3..36
score: 7.