Spo11693.1 (mRNA)

Overview
NameSpo11693.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_03239 : 4351 .. 7380 (-)
Sequence length1246
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTACTTCGTGCCTTCGCTCTTCGCTGAATTGGGGTGACTCGCAAAGCGCGCTGCTCCGTGTCTTCGCTGCTTCACGAATCAGGACCACCGGGCACCAAGCCTGAGTTCCTGGCGGCAAATGGTTGGCGGCGGACGACTAGAGACCTGAGACCACGCAAGTCACGACTCCATACTCGCGTGTCACGACCCAATACCATCGCCCCCTGAGGTGCCTTAATTTCATTTTTTAATTTCAGATTTTCAGGTAACCTACTTTAAATCATAATTCAGTTTCCAGTTTTTTGTGTTTTTGGCGTAACTAATTTGTTTGCGGTTTTGGGGTTGACTTTCCAGCAATGATGAAATGATTGTCAATTCTCTAAATATAAGTATTGTGTATCATGGGGTGTATAAATGTTGATTGTAGAAAAGTTTTATCATGTTGTCTTTTGATTTATTGACCGATTAGTCTATCTCCAATAGAAGTGGAAAAACTCTTTTTAGAATTATGTTCTTTTGCTATTGGTGTTAATTGAATTGTCTTTGTGGTTTTAAATCCTTATTGAGTTATTATAGTCTTCCGAGTGCCTTGATTCTCTCTTTGGATTTCTTTTGTATTGATGACTCTGTATTTTCTAAATTAGTGTTCATGTTGATCTGAACTCCCTCTCCTTTCAATTTTTTTTTATTACAGTTATATTTTCTTTTATGTGATTGTTATGATTGAAATTTCTTTTTTGTTTTTAGTTTCTTGAACATTAATTCAATGGTTGTGTTAGCTAAACGAGATATTTTCATTGGATGCAGTATTCATAAGGTTTCTAATTAATTGTTTCAGGTGGTCAATGTATCATCACCCATGGACTATGTCCGTTCCAAGGAAGAAAACAGCTTAAGGATCTTGAAAAGAAGGTTGTCTTCTAGTCTTAATCTTGTTTCTCAACACTTTGCTTCTAGCTTACTACTAATGCATCTTTAGATCAATGGTCTTTTCTCGGAAATTCCACTTACTGAACGTTGATACTGGCATACGATGTCTGCTTTTGCATTGCCTTCTTGCCTTGTGCAGATATTTATTTGGCTGCTTTATTGTCCTGGCTTACCATTTCACCTCTTTATTGCAGTTGGAGCTTCTTCTGCATCTGCAACACCTGCTGGTATACGACTGTGAATGTTCAGTTTGGACTGTAAGTTGCCATGTAGCTTTTTTGAATTGACGTTGTCTTGGCATTCTGTGTTGTGCTGCAGTGGTCTGAAAGACGAAAATTTAAATTGTCAAATTTATGTCCTCTATTATGAAGCAAAGACATTTATCAAGCAGGTTTGTGGACAAACTTCTTTATTTGGATTTTGTAGGATTCTTCATTTCAATAAGTTGTTCAAGTGAGCACTTGGATATAAATAGGGGAAATTGTTATTGGAAATATTGGTGACTAGAGAGTTGTGCTACGATCCATACATAGTGATAGTTTACAACTTTACATGATGATGTCTAGTGGAGCTAAGTAGCTAACTACTTGTCTTCATTAGATGATTTTAACAATGCACTTGTTTAATGAGGAATATGTTATTGAGGAAACCCGAGGGCTATTGCACCAGTCTTCAGACTAGGATAGAAAACGCTTGAGTTAAGGACATTGTAGACTGAGGACCTATTATTTTCTACTTGTGTGAACTTTCAATTATAAGGAAGTCCTTGTATGCAAATCAAGTATTTCAATTATAATATTACTAAGGTATTACAATTATCACATTACCCCTCACCCCCGAATATTCCATTGTAGATCATTCTTTTGGTTCTCATCCTTAAATATCCGAAGCAGAGAGAAATAAGAAGCCTGGAGGTTGTGTTTTTGCGCTTCAAGATGAACAGTTGCAGGCCAATCAATAGTGCACGCAAAGCACCATGACCACAATGCAGCAACGCTGCAAGCACCCAATAGAGAACAACAATCACCAGCACCATTGTGCAGAAGCAATCTGGAAAACAACTGCACAATAGCAGCACCTGCAACAATAGAACAAAGCTCACAACTATGCTGCAGATCACAGTGGCAAAAAACCCAAAATACAGCACTAAAACACCCGCACACAGCAGACCTGAAATCTGCAACCAGAACAAAACAGCAGCATAACACAACCTAAAAAAACAGAGGGAATTCCGGAGTGCAAGATGAAGTTTCTTTAGTTGCGCGAACGCAGGGCTTTTGCTGCTCTCCTACGTACTGATGTGCAGGCTATCCTACGTATTGAATGCCGTCTAGCAAGAATGCAGGATGGAAAGAAATAATCTTCTAGTTGTGCACATCAGTTTGAGTGGCTTCAGTCTACTATTTAAGGTACACATTCTGATTTTGTATTAGTCTTTCTATTTAATTTCAATGACTGTTTTATGAATTACTTTGAGGGCTAGAAATCTAGAATCACCTCCAAGGTCTCAGACATTAGTCCTGACTATCAAGTTTTTATTTTTTTTATTTCGTAAACTTTATTATATATTTATATATGCATGAACATATTCATATGTTGAAGTATTATGCTATAAGGTTTATAATTGTTTATTTTGTTACATGATTTACAGATTGTGCACCCAACAAGTTTGTGCTTCAAACTACCTGATTAGTGATTACATGAGTTTGGAAGAAGGAGCAATGTGTGAACCTCTAAGCGTTGGTGTCTACAGTTGCCCGTCGAGCTGAGGTTGGGGCTAAGGCTATAGTTTTTATCATTGGAGCGGGAATCAAGCAGTTTAAAAATGGAGATGTAAATCAGTTGGCCTATTTCAACAGTTACACCTTCATTCGCGCAAACACCGGAGTGCAATCAAGCTGAAGTTTCTCCAGTCGCGCGAACACCGTCCTTTTGCTGCTCTCCTACATACTGATGTGCAAGCTCATTAAGAACACCACGGGCTTGGAAGAAGGGGAAGGGTATTGTTGCGTCATGTTATTGTTTTTTTCTTTCCATTTTTTAAATGCTAGTAGTAACTTGTAAAATGTACGTTATTTTTTAATATATTTAATTAATGCTTGTTTTGAAAAAAAAAA

mRNA sequence

ATGACTACTTCGTGCCTTCGCTCTTCGCTGAATTGGGATTTTCAGGTGGTCAATGTATCATCACCCATGGACTATGTCCGTTCCAAGGAAGAAAACAGCTTAAGGATCTTGAAAAGAAGTTGGAGCTTCTTCTGCATCTGCAACACCTGCTGTGGTCTGAAAGACGAAAATTTAAATTGTCAAATTTATGTCCTCTATTATGAAGCAAAGACATTTATCAAGCAGATCATTCTTTTGGTTCTCATCCTTAAATATCCGAAGCAGAGAGAAATAAGAAGCCTGGAGGTTGTGTTTTTGCGCTTCAAGATGAACAGTTGCAGGCCAATCAATAGTGCACGCAAAGCACCATGACCACAATGCAGCAACGCTGCAAGCACCCAATAGAGAACAACAATCACCAGCACCATTGTGCAGAAGCAATCTGGAAAACAACTGCACAATAGCAGCACCTGCAACAATAGAACAAAGCTCACAACTATGCTGCAGATCACAGTGGCAAAAAACCCAAAATACAGCACTAAAACACCCGCACACAGCAGACCTGAAATCTGCAACCAGAACAAAACAGCAGCATAACACAACCTAAAAAAACAGAGGGAATTCCGGAGTGCAAGATGAAGTTTCTTTAGTTGCGCGAACGCAGGGCTTTTGCTGCTCTCCTACGTACTGATGTGCAGGCTATCCTACGTATTGAATGCCGTCTAGCAAGAATGCAGGATGGAAAGAAATAATCTTCTAGTTGTGCACATCAGTTTGAGTGGCTTCAGTCTACTATTTAAGATTGTGCACCCAACAAGTTTGTGCTTCAAACTACCTGATTAGTGATTACATGAGTTTGGAAGAAGGAGCAATGTGTGAACCTCTAAGCGTTGGTGTCTACAGTTGCCCGTCGAGCTGAGGTTGGGGCTAAGGCTATAGTTTTTATCATTGGAGCGGGAATCAAGCAGTTTAAAAATGGAGATGTAAATCAGTTGGCCTATTTCAACAGTTACACCTTCATTCGCGCAAACACCGGAGTGCAATCAAGCTGAAGTTTCTCCAGTCGCGCGAACACCGTCCTTTTGCTGCTCTCCTACATACTGATGTGCAAGCTCATTAAGAACACCACGGGCTTGGAAGAAGGGGAAGGGTATTGTTGCGTCATGTTATTGTTTTTTTCTTTCCATTTTTTAAATGCTAGTAGTAACTTGTAAAATGTACGTTATTTTTTAATATATTTAATTAATGCTTGTTTTGAAAAAAAAAA

Coding sequence (CDS)

ATGACTACTTCGTGCCTTCGCTCTTCGCTGAATTGGGATTTTCAGGTGGTCAATGTATCATCACCCATGGACTATGTCCGTTCCAAGGAAGAAAACAGCTTAAGGATCTTGAAAAGAAGTTGGAGCTTCTTCTGCATCTGCAACACCTGCTGTGGTCTGAAAGACGAAAATTTAAATTGTCAAATTTATGTCCTCTATTATGAAGCAAAGACATTTATCAAGCAGATCATTCTTTTGGTTCTCATCCTTAAATATCCGAAGCAGAGAGAAATAAGAAGCCTGGAGGTTGTGTTTTTGCGCTTCAAGATGAACAGTTGCAGGCCAATCAATAGTGCACGCAAAGCACCATGA

Protein sequence

MTTSCLRSSLNWDFQVVNVSSPMDYVRSKEENSLRILKRSWSFFCICNTCCGLKDENLNCQIYVLYYEAKTFIKQIILLVLILKYPKQREIRSLEVVFLRFKMNSCRPINSARKAP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo11693Spo11693gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo11693.1Spo11693.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11693.1.CDS.6Spo11693.1.CDS.6CDS
Spo11693.1.CDS.5Spo11693.1.CDS.5CDS
Spo11693.1.CDS.4Spo11693.1.CDS.4CDS
Spo11693.1.CDS.3Spo11693.1.CDS.3CDS
Spo11693.1.CDS.2Spo11693.1.CDS.2CDS
Spo11693.1.CDS.1Spo11693.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11693.1.utr3p.2Spo11693.1.utr3p.2three_prime_UTR
Spo11693.1.utr3p.1Spo11693.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11693.1.exon.7Spo11693.1.exon.7exon
Spo11693.1.exon.6Spo11693.1.exon.6exon
Spo11693.1.exon.5Spo11693.1.exon.5exon
Spo11693.1.exon.4Spo11693.1.exon.4exon
Spo11693.1.exon.3Spo11693.1.exon.3exon
Spo11693.1.exon.2Spo11693.1.exon.2exon
Spo11693.1.exon.1Spo11693.1.exon.1exon


Homology
[Close]
BLAST of Spo11693.1 vs. NCBI nr
Match: gi|902186869|gb|KNA10796.1| (hypothetical protein SOVF_140990 isoform A [Spinacia oleracea])

HSP 1 Score: 64.7 bits (156), Expect = 1.200e-7
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1 

		  

Query: 23 MDYVRSKEENSLRILKRSWSFFCICNTC 51
          MDYVRSKEENSLRILKRSWSFFCICNTC
Sbjct: 1  MDYVRSKEENSLRILKRSWSFFCICNTC 28
[Close]
BLAST of Spo11693.1 vs. NCBI nr
Match: gi|902186870|gb|KNA10797.1| (hypothetical protein SOVF_140990 isoform B [Spinacia oleracea])

HSP 1 Score: 64.7 bits (156), Expect = 1.200e-7
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1 

		  

Query: 23 MDYVRSKEENSLRILKRSWSFFCICNTC 51
          MDYVRSKEENSLRILKRSWSFFCICNTC
Sbjct: 1  MDYVRSKEENSLRILKRSWSFFCICNTC 28
[Close]
BLAST of Spo11693.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWA9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_140990 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.500e-8
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1 

		  

Query: 23 MDYVRSKEENSLRILKRSWSFFCICNTC 51
          MDYVRSKEENSLRILKRSWSFFCICNTC
Sbjct: 1  MDYVRSKEENSLRILKRSWSFFCICNTC 28
[Close]
BLAST of Spo11693.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU30_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_140990 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 8.500e-8
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 1 

		  

Query: 23 MDYVRSKEENSLRILKRSWSFFCICNTC 51
          MDYVRSKEENSLRILKRSWSFFCICNTC
Sbjct: 1  MDYVRSKEENSLRILKRSWSFFCICNTC 28
The following BLAST results are available for this feature:
BLAST of Spo11693.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902186869|gb|KNA10796.1|1.2e-7100.hypothetical protein SOVF_1409... [more]
gi|902186870|gb|KNA10797.1|1.2e-7100.hypothetical protein SOVF_1409... [more]
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BLAST of Spo11693.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9QWA9_SPIOL8.5e-8100.Uncharacterized protein OS=Spi... [more]
A0A0K9QU30_SPIOL8.5e-8100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo11693.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11693.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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