Spo11923.1 (mRNA) | SpinachBase

Overview


Name	Spo11923.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RING finger-like protein
Location	chr4 : 7794890 .. 7798302 (+)
Sequence length	1530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTTTTTTTTTTTGGGGCAGAATCCTGAAAAAGTATAAGAATTATCCCATCTTTGATTCTCTCTTCTTCCCCCTCCTTATTAGTTTCTTCCTTGGGGGATTCCCTTTTTATTTTTACCCCCCATTTTTCTCTCTCCATTTTTTTCTAATTTGAATCCTCCATAGTTTTAGCAATGACTTCACTCACCGCCTTTGTCGACGAACACCTTACTGCCGATCTCATCAATAACAATCAGGTAAACTAATTGAACCCTGATTCTTTAATTTTATTTTTGTAATGTTAAGTAGATCTTATTGGTTTTACTTGATTTTGATATGTGGGTTATTCGATTTATTAGGGTTTCATGTTTGAAATTGACGCAGTTTGAGGATATGAGGTTATTGTTTTGATTTCGGGTTCTGGGTCGTCGATTTATCAGGGTTTCATGTTTGAAATTGATCCCAAATTTGAGGATAGCAGGTTATTGTTTTGATTTTGGGTTCTTGGTCATTGATTTATTAGGGTTTCATGAGGGAAATTCATTTCTGTTTCGGGATTTGAGATTATTAGTTGATTTTAGCTTCTGGGTGATTGAAAAATGAGGGTTTCTTGGCTGGAATTGATCCCAATTTGGGGATTTGAGGTAGTTTATTTGATTTTGGCTTCTTGTAATTGATGAAACTAGGGTTTCTTGTCTGAAATTGACCCTGTAGTTTATTTCTTATTTTTGCTTCTGGGTGATTGAAAAATGAGGGTTTCTTGTCTCAAATTGATCCCAATTTGGGGATTTGAGGTAGTTTATTTGATTTTAGCTTATGGTCATTGATTGATCAAATATTTCTTGTCCGAGTTGATCAAGAGTTGGGGATTTGGTTTGATTTAATCAGCATTTGTTGATTTCTTTGTTGGTATTTGATTGGAACAGGGGAAAATGAAGGAGGAGGAGAGCGAAGAAGTTGAAAGGGGCGAAGTTAGTGCTGTGGTGATTCATGATGGTGTATGTGCCATTTGTTTGGATGATATTGAGCTTCAAGAAACTGCCCTTGTTAAAGGTTGCGAGCATGTTTACTGGTTTGTCTCGTCCTTTTTGTTTTCCTAAGACTTACATTTGGTCTATTAATTCGTTTTTATAGCATTTGATTGAGTGATTGTCGTGTTTTTGCTGTTCTTCCGATATTTGGTCACATGTTGAACGTCTCTTATGCAAATTTGCATTTTGGGAGAATTCGTGCGATTATAATTATCTTATCAAGTGTTATTGATTTGGGGCAAGAACGAAAATATGTCATCACATTGCATTGTTAATTGAACATATTCATCAGGTTAACATGAGAAGCTAGATTAGGTGATTCTAACGTAAATCTATTCTTTGACTGCTGTAAAAGGAAGGCATTATTACTTGTGCGCTTGATTAGAGGGGTTATTGGAGCAAAGAATCTGTTTCTTTTGTTGTGTAACTAACTACTCCATATTTTTTAACTGCTATGGAAGGAAAGCTTGCCATACTTCATACTTGTAGACTTGACATGGGAGATGTGGGATAAAATGTGGCACGTTTACTTGTGGTTAGATGTTAATGATTATTTTAGTGCTTAGTTTGATGATGAGCTCGGAATCAAAGGAATTTAGCAGTTCTGGTTCTGGTTCTGGTTCTCACCTGAATATACAATGTTAGTTCATGAGCAGTATCACAAGTGTGTCCTTATCATGGGGCTTGTTGAGCGCAGCCAAAATATATTCTGACACTTTTTTTATGTCATCTAAGTAGCTCTTGTAGTAGAAGCTAAAGGGCATATTTTCTTTCGCTTGCATAGATAAGTTTATCAGAAGTTCTATTAAATCCTTTAGAATTTAATTGTGTGGCAAAGTTATTTGGAATGGGTAGAACTGTTGTTGGATTCCAATCCAAAGTCTTTTGAAGGAAATGTTAATCTTATTTATTATGATCATGAATGGAATAAAATAATGGTGTGCTTTTCTTTCCATTACTTGAGTAAATCAGGAATGTTATTGATGCTTTTTTTGTTTCTTTTTCAGTGTGAACTGCATCCTGCAATGGGCGACATATCATGAGAATCCTAAATGCCCACAGTGCAAAAATCCATTTGAATCTCTTAGTGTTCATCGTTCACTCGATGGAAAGTACGTCTTTGATCTCTTCTCTTTGTTTGGAAATTTCCTTTCATCTTCACTTCCCTTTTAAAAGGGTATAAAAGAACATAAAAGCGGAAGTATAGGTATAGATATTTACTTCTCCCCTTCATTTATAGCGCACCTGATTTGCTACTTTATCAAAAAAAAAAAATCTGCCATTGTTGATATACTCCGTAGTGTTGAAGGATTCATCATGTGCATTTTGCTTATGTATAGTGGTACTCTTCATCTTGCAGCTTGCACGACTACATGCTTGAAGAAAGTGTATGCTTGCTTGTGAGAGCCTCATGGTTTACACCTTTGGTTGTCGAACATCAAGATGACTTTTATGACGAACTGGAGGATATTTTGTACTACCAATACCAGTATCAATATGAATATGAGCATCTCAATGATGAAGATATTGAGGATGATTACTTTCACAACTCACCAAGCCTCCGCATTGGCAACCGTAGGTGGGGCGATAATGGATACGTAAGGGCGGGTCGCCTAGAGGCCCGACCGGTCCCTAGGTCAAACCCGCAAAACACCGGTGCTAGTTCATCCCGTCAGAGGAAACAGAAAGAAGTGGTGGAGAAAGATGTGGATAATGTCGGGTCTTCTTCTGATTCGTCTAAGAAGAAAGAGGTTGGAAAAGAGCTGGTTGGGCGCCGTGCCAAGAGGGCACTGAAGCGCGAGGCTGCTGACAAGGCGGCTGCGGCGAAACATCAACAGCATTTGGTTAGGTTAGGTAGGAGTATTTGATGATATGGGGGTGGCAATTCGGGTCAATGGGTCAGTTTCGGGTCTACGGGTCAGGTTTGGCACCCCTTGTACAGTATCTTTCGTCTCTTAATTTCCGCGTTGTAAAAATAACGGCACCATAGCTGACTGACTGGTTCTGTTTTAGTTTAAGAATTGTATACTCTGCTAAGTAGTAGATAACCTTAGTTATCATCATCATAACCCATTTATTTCTGGGTTGGAACTTCTTCAAGAAAGCTATTGCAACAACCTTTGAACTTGGTTCTTGTGAATTCTTTTGATTTGTTCATGTAAATACATTTATTGACCGCGTTTCTGTAAATATTTTGACTCTTTTTCTTTCCTCTCTTTATTTTTTCAGGTATCTACAAATCCTCTTTTGTGGAATCATGTTGTTGAACAATCTTTCATTTGCTTAGATAAGATTATGCTTTTTGATATGATCACATTTGCTAGGTTATTTCTCTGCGCACACTATTTTTGACTAGTTACCAGGTGAAACTAAAGATAGCTGACCCGACACGAAAAAGCCC

mRNA sequence

ATTTTTTTTTTTTTTTGGGGCAGAATCCTGAAAAAGTATAAGAATTATCCCATCTTTGATTCTCTCTTCTTCCCCCTCCTTATTAGTTTCTTCCTTGGGGGATTCCCTTTTTATTTTTACCCCCCATTTTTCTCTCTCCATTTTTTTCTAATTTGAATCCTCCATAGTTTTAGCAATGACTTCACTCACCGCCTTTGTCGACGAACACCTTACTGCCGATCTCATCAATAACAATCAGGGGAAAATGAAGGAGGAGGAGAGCGAAGAAGTTGAAAGGGGCGAAGTTAGTGCTGTGGTGATTCATGATGGTGTATGTGCCATTTGTTTGGATGATATTGAGCTTCAAGAAACTGCCCTTGTTAAAGGTTGCGAGCATGTTTACTGTGTGAACTGCATCCTGCAATGGGCGACATATCATGAGAATCCTAAATGCCCACAGTGCAAAAATCCATTTGAATCTCTTAGTGTTCATCGTTCACTCGATGGAAACTTGCACGACTACATGCTTGAAGAAAGTGTATGCTTGCTTGTGAGAGCCTCATGGTTTACACCTTTGGTTGTCGAACATCAAGATGACTTTTATGACGAACTGGAGGATATTTTGTACTACCAATACCAGTATCAATATGAATATGAGCATCTCAATGATGAAGATATTGAGGATGATTACTTTCACAACTCACCAAGCCTCCGCATTGGCAACCGTAGGTGGGGCGATAATGGATACGTAAGGGCGGGTCGCCTAGAGGCCCGACCGGTCCCTAGGTCAAACCCGCAAAACACCGGTGCTAGTTCATCCCGTCAGAGGAAACAGAAAGAAGTGGTGGAGAAAGATGTGGATAATGTCGGGTCTTCTTCTGATTCGTCTAAGAAGAAAGAGGTTGGAAAAGAGCTGGTTGGGCGCCGTGCCAAGAGGGCACTGAAGCGCGAGGCTGCTGACAAGGCGGCTGCGGCGAAACATCAACAGCATTTGGTTAGGTTAGGTAGGAGTATTTGATGATATGGGGGTGGCAATTCGGGTCAATGGGTCAGTTTCGGGTCTACGGGTCAGGTTTGGCACCCCTTGTACAGTATCTTTCGTCTCTTAATTTCCGCGTTGTAAAAATAACGGCACCATAGCTGACTGACTGGTTCTGTTTTAGTTTAAGAATTGTATACTCTGCTAAGTAGTAGATAACCTTAGTTATCATCATCATAACCCATTTATTTCTGGGTTGGAACTTCTTCAAGAAAGCTATTGCAACAACCTTTGAACTTGGTTCTTGTGAATTCTTTTGATTTGTTCATGTAAATACATTTATTGACCGCGTTTCTGTAAATATTTTGACTCTTTTTCTTTCCTCTCTTTATTTTTTCAGGTATCTACAAATCCTCTTTTGTGGAATCATGTTGTTGAACAATCTTTCATTTGCTTAGATAAGATTATGCTTTTTGATATGATCACATTTGCTAGGTTATTTCTCTGCGCACACTATTTTTGACTAGTTACCAGGTGAAACTAAAGATAGCTGACCCGACACGAAAAAGCCC

Coding sequence (CDS)

ATGACTTCACTCACCGCCTTTGTCGACGAACACCTTACTGCCGATCTCATCAATAACAATCAGGGGAAAATGAAGGAGGAGGAGAGCGAAGAAGTTGAAAGGGGCGAAGTTAGTGCTGTGGTGATTCATGATGGTGTATGTGCCATTTGTTTGGATGATATTGAGCTTCAAGAAACTGCCCTTGTTAAAGGTTGCGAGCATGTTTACTGTGTGAACTGCATCCTGCAATGGGCGACATATCATGAGAATCCTAAATGCCCACAGTGCAAAAATCCATTTGAATCTCTTAGTGTTCATCGTTCACTCGATGGAAACTTGCACGACTACATGCTTGAAGAAAGTGTATGCTTGCTTGTGAGAGCCTCATGGTTTACACCTTTGGTTGTCGAACATCAAGATGACTTTTATGACGAACTGGAGGATATTTTGTACTACCAATACCAGTATCAATATGAATATGAGCATCTCAATGATGAAGATATTGAGGATGATTACTTTCACAACTCACCAAGCCTCCGCATTGGCAACCGTAGGTGGGGCGATAATGGATACGTAAGGGCGGGTCGCCTAGAGGCCCGACCGGTCCCTAGGTCAAACCCGCAAAACACCGGTGCTAGTTCATCCCGTCAGAGGAAACAGAAAGAAGTGGTGGAGAAAGATGTGGATAATGTCGGGTCTTCTTCTGATTCGTCTAAGAAGAAAGAGGTTGGAAAAGAGCTGGTTGGGCGCCGTGCCAAGAGGGCACTGAAGCGCGAGGCTGCTGACAAGGCGGCTGCGGCGAAACATCAACAGCATTTGGTTAGGTTAGGTAGGAGTATTTGA

Protein sequence

MTSLTAFVDEHLTADLINNNQGKMKEEESEEVERGEVSAVVIHDGVCAICLDDIELQETALVKGCEHVYCVNCILQWATYHENPKCPQCKNPFESLSVHRSLDGNLHDYMLEESVCLLVRASWFTPLVVEHQDDFYDELEDILYYQYQYQYEYEHLNDEDIEDDYFHNSPSLRIGNRRWGDNGYVRAGRLEARPVPRSNPQNTGASSSRQRKQKEVVEKDVDNVGSSSDSSKKKEVGKELVGRRAKRALKREAADKAAAAKHQQHLVRLGRSI

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo11923	Spo11923	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo11923.1	Spo11923.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11923.1.exon.1	Spo11923.1.exon.1	exon
Spo11923.1.exon.2	Spo11923.1.exon.2	exon
Spo11923.1.exon.3	Spo11923.1.exon.3	exon
Spo11923.1.exon.4	Spo11923.1.exon.4	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11923.1.utr5p.1	Spo11923.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11923.1.CDS.1	Spo11923.1.CDS.1	CDS
Spo11923.1.CDS.2	Spo11923.1.CDS.2	CDS
Spo11923.1.CDS.3	Spo11923.1.CDS.3	CDS
Spo11923.1.CDS.4	Spo11923.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11923.1.utr3p.1	Spo11923.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo11923.1 vs. NCBI nr
Match: gi|731325908|ref|XP_010673753.1| (PREDICTED: uncharacterized protein LOC104890082 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 407.5 bits (1046), Expect = 1.800e-110
Identity = 213/273 (78.02%), Postives = 236/273 (86.45%), Query Frame = 1


		  
Query: 2   TSLTAFVDEHLTADL---INNNQGKMKEEESEEVERGEVSAVVIHDGVCAICLDDIELQE 61
           TSLTAFVDE L+ DL   I  ++G+M EE  +    G++SAV ++DGVCAICLD IELQE
Sbjct: 3   TSLTAFVDERLSNDLNDLIIPDKGEMNEEREKG---GQMSAVAVNDGVCAICLDCIELQE 62

Query: 62  TALVKGCEHVYCVNCILQWATYHENPKCPQCKNPFESLSVHRSLDGNLHDYMLEESVCLL 121
           TALVKGCEHVYCVNCILQWATYHE+PKCPQCKNPF++LSVHR+LDG+LHDYM EES+CLL
Sbjct: 63  TALVKGCEHVYCVNCILQWATYHEHPKCPQCKNPFDTLSVHRALDGSLHDYMFEESLCLL 122

Query: 122 VRASWFTPLVVEHQDDFYDELEDILYYQYQYQYEYEHLNDEDIEDDYFHNSPSLRIGNRR 181
           VRASWF PLVVE  DDFYDEL+DI YYQYQYQYEY  L D+D EDDYFH+SPSLRIGNRR
Sbjct: 123 VRASWFKPLVVEPYDDFYDELDDIFYYQYQYQYEYGDLGDDDFEDDYFHSSPSLRIGNRR 182

Query: 182 WGDNGYVRAGRLEARPVPRSNPQNTGASSSRQRKQKEVVEKDVDNVGSSSDSSKKKEVGK 241
           WGDNGY+ AGR EARPV RSNPQN+GASSSRQRK+KE VE D D   SSS S K KEVGK
Sbjct: 183 WGDNGYISAGRQEARPVHRSNPQNSGASSSRQRKKKE-VENDTD--ASSSVSPKNKEVGK 242

Query: 242 ELVGRRAKRALKREAADKAAAAKHQQHLVRLGR 272
           +L+GRRAKRALKREAADKAAAAKHQQHLVRLGR
Sbjct: 243 DLIGRRAKRALKREAADKAAAAKHQQHLVRLGR 269

[Close]

BLAST of Spo11923.1 vs. NCBI nr
Match: gi|902238302|gb|KNA25125.1| (hypothetical protein SOVF_009340 [Spinacia oleracea])

HSP 1 Score: 315.1 bits (806), Expect = 1.200e-82
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1


		  
Query: 110 MLEESVCLLVRASWFTPLVVEHQDDFYDELEDILYYQYQYQYEYEHLNDEDIEDDYFHNS 169
           MLEESVCLLVRASWFTPLVVEHQDDFYDELEDILYYQYQYQYEYEHLNDEDIEDDYFHNS
Sbjct: 1   MLEESVCLLVRASWFTPLVVEHQDDFYDELEDILYYQYQYQYEYEHLNDEDIEDDYFHNS 60

Query: 170 PSLRIGNRRWGDNGYVRAGRLEARPVPRSNPQNTGASSSRQRKQKEVVEKDVDNVGSSSD 229
           PSLRIGNRRWGDNGYVRAGRLEARPVPRSNPQNTGASSSRQRKQKEVVEKDVDNVGSSSD
Sbjct: 61  PSLRIGNRRWGDNGYVRAGRLEARPVPRSNPQNTGASSSRQRKQKEVVEKDVDNVGSSSD 120

Query: 230 SSKKKEVGKELVGRRAKRALKREAADKAAAAKHQQHLVRLGRSI 274
           SSKKKEVGKELVGRRAKRALKREAADKAAAAKHQQHLVRLGRSI
Sbjct: 121 SSKKKEVGKELVGRRAKRALKREAADKAAAAKHQQHLVRLGRSI 164

[Close]

BLAST of Spo11923.1 vs. NCBI nr
Match: gi|1012201829|ref|XP_015973404.1| (PREDICTED: uncharacterized protein LOC107496618 [Arachis duranensis])

HSP 1 Score: 284.6 bits (727), Expect = 1.800e-73
Identity = 162/273 (59.34%), Postives = 192/273 (70.33%), Query Frame = 1


		  
Query: 4   LTAFVDEHLTADLINNNQGKMKEEESEEVERGEVSAVVIHDGVCAICLDDIELQETALVK 63
           LT  ++E      I +  G   EEE   VE G  + V   +G+CAICLD I LQ+TALVK
Sbjct: 5   LTNDLNELSLKPQIQSETGSECEEEIRGVEGGGGNHVH-REGLCAICLDKILLQDTALVK 64

Query: 64  GCEHVYCVNCILQWATYHENPKCPQCKNPFESLSVHRSLDGNLHDYMLEESVCLLVRASW 123
           GCEH YCV CIL+WATY E   CPQCK+PF+ L VHRSLDG++ DYM EESVCLL+RA+W
Sbjct: 65  GCEHAYCVTCILRWATYRERVTCPQCKHPFDFLFVHRSLDGSIQDYMFEESVCLLLRAAW 124

Query: 124 FTPLVVEH---QDDFYDELEDILYYQYQYQYEYEHLNDEDIEDDYFHNSPSLRIGNRRWG 183
           F PL VE+    +D YD +ED  +YQYQY YEY+  +D+D+++ Y+ +S SLRIGNRRWG
Sbjct: 125 FQPLKVENHVEHEDAYDPIED--FYQYQYDYEYDDEDDDDLDEVYYGSSSSLRIGNRRWG 184

Query: 184 DNGYVRAGRLEARPVPRSNPQNTG--ASSSRQRKQKEVVEKDVDNVGSSSDSSKKKEVGK 243
           DNGYVR+GRLEARPVPRSN Q+ G  +SSSRQ K+KE  E                   K
Sbjct: 185 DNGYVRSGRLEARPVPRSNFQDPGGASSSSRQPKKKEAAE-------------------K 244

Query: 244 ELVGRRAKRALKREAADKAAAAKHQQHLVRLGR 272
              GRRAKRALKREAADKAAAAKHQQHLVRLGR
Sbjct: 245 VATGRRAKRALKREAADKAAAAKHQQHLVRLGR 255

[Close]

BLAST of Spo11923.1 vs. NCBI nr
Match: gi|595899827|ref|XP_007213836.1| (hypothetical protein PRUPE_ppa010547mg [Prunus persica])

HSP 1 Score: 281.6 bits (719), Expect = 1.500e-72
Identity = 151/266 (56.77%), Postives = 187/266 (70.30%), Query Frame = 1


		  
Query: 10  EHLTADLINNN----QGKMKEEESEEVERGEVSAVVIHDGVCAICLDDIELQETALVKGC 69
           + + +DLIN++    QG+M +  ++ VE+   +    H GVCAICLD+I LQETALVKGC
Sbjct: 11  DQILSDLINSSTQQHQGEM-QSNTDNVEKRCGN----HGGVCAICLDEIMLQETALVKGC 70

Query: 70  EHVYCVNCILQWATYHENPKCPQCKNPFESLSVHRSLDGNLHDYMLEESVCLLVRASWFT 129
           EH YC  CIL+W TY + P CPQCK+PFE L+VHRSLDG++HDYM EESVCLL+RA WF 
Sbjct: 71  EHAYCATCILRWVTYSQKPTCPQCKHPFEFLNVHRSLDGSIHDYMFEESVCLLLRAKWFE 130

Query: 130 PLVVEHQDDFYDELEDILYYQYQYQYEYEHLNDEDIEDDYFHNSPSLRIGNRRWGDNGYV 189
           PL+VE ++D YD+ +D       Y Y YE   D+D+++ YF +S S+RIGNRRWGDNGYV
Sbjct: 131 PLIVEEREDVYDDPDD-------YYYPYEDEEDDDLDEAYFSSSSSIRIGNRRWGDNGYV 190

Query: 190 RAGRLEARPVPRSNPQNTGASSSRQRKQKEVVEKDVDNVGSSSDSSKKKEVGKELVGRRA 249
           R GR EARPV RSN +++GASSSR+                     +KKE   +  GRRA
Sbjct: 191 RGGRQEARPVNRSNIEDSGASSSRE--------------------PRKKEAAMDKTGRRA 244

Query: 250 KRALKREAADKAAAAKHQQHLVRLGR 272
           KRALKREAADKAAAAKHQQHL RLGR
Sbjct: 251 KRALKREAADKAAAAKHQQHLARLGR 244

[Close]

BLAST of Spo11923.1 vs. NCBI nr
Match: gi|802558931|ref|XP_012065903.1| (PREDICTED: uncharacterized protein LOC105628995 [Jatropha curcas])

HSP 1 Score: 280.0 bits (715), Expect = 4.300e-72
Identity = 154/271 (56.83%), Postives = 182/271 (67.16%), Query Frame = 1


		  
Query: 1   MTSLTAFVDEHLTADLINNNQGKMKEEESEEVERGEVSAVVIHDGVCAICLDDIELQETA 60
           MTSL       LT  L + +     E +S+ VE     +   H GVCAICLD I LQETA
Sbjct: 1   MTSLINVEAHQLTNTLAHFSIQDQVEAQSK-VEANNEKSCGNHGGVCAICLDKIVLQETA 60

Query: 61  LVKGCEHVYCVNCILQWATYHENPKCPQCKNPFESLSVHRSLDGNLHDYMLEESVCLLVR 120
           LV+GCEH YCV CIL+WATY + P CPQCK+PFE L+VHRSLDG++ DYM EESVCLL+R
Sbjct: 61  LVRGCEHAYCVTCILRWATYSQKPTCPQCKHPFEFLNVHRSLDGSIQDYMFEESVCLLLR 120

Query: 121 ASWFTPLVVEHQDDFYDELEDILYYQYQYQYEYEHLNDEDIEDDYFHNSPSLRIGNRRWG 180
           A WF PL+VE   + YD+LE      Y Y YEYE  +++D+++ Y   S +LRIGNRRWG
Sbjct: 121 APWFKPLIVEEHHNVYDDLE-----YYYYPYEYEDEDEDDLDEVYLSRSSNLRIGNRRWG 180

Query: 181 DNGYVRAGRLEARPVPRSNPQNTGASSSRQRKQKEVVEKDVDNVGSSSDSSKKKEVGKEL 240
           DNGYVRAGR EARPV R NPQ++GA  SR+ KQ                    KE  K+ 
Sbjct: 181 DNGYVRAGRQEARPVHRPNPQDSGAGPSREPKQ--------------------KEAAKDR 240

Query: 241 VGRRAKRALKREAADKAAAAKHQQHLVRLGR 272
            GRRAKR LKREAADKAAAAKHQQHL+RLGR
Sbjct: 241 TGRRAKRTLKREAADKAAAAKHQQHLLRLGR 245

[Close]

BLAST of Spo11923.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CLI5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g073650 PE=4 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 1.300e-110
Identity = 213/273 (78.02%), Postives = 236/273 (86.45%), Query Frame = 1


		  
Query: 2   TSLTAFVDEHLTADL---INNNQGKMKEEESEEVERGEVSAVVIHDGVCAICLDDIELQE 61
           TSLTAFVDE L+ DL   I  ++G+M EE  +    G++SAV ++DGVCAICLD IELQE
Sbjct: 3   TSLTAFVDERLSNDLNDLIIPDKGEMNEEREKG---GQMSAVAVNDGVCAICLDCIELQE 62

Query: 62  TALVKGCEHVYCVNCILQWATYHENPKCPQCKNPFESLSVHRSLDGNLHDYMLEESVCLL 121
           TALVKGCEHVYCVNCILQWATYHE+PKCPQCKNPF++LSVHR+LDG+LHDYM EES+CLL
Sbjct: 63  TALVKGCEHVYCVNCILQWATYHEHPKCPQCKNPFDTLSVHRALDGSLHDYMFEESLCLL 122

Query: 122 VRASWFTPLVVEHQDDFYDELEDILYYQYQYQYEYEHLNDEDIEDDYFHNSPSLRIGNRR 181
           VRASWF PLVVE  DDFYDEL+DI YYQYQYQYEY  L D+D EDDYFH+SPSLRIGNRR
Sbjct: 123 VRASWFKPLVVEPYDDFYDELDDIFYYQYQYQYEYGDLGDDDFEDDYFHSSPSLRIGNRR 182

Query: 182 WGDNGYVRAGRLEARPVPRSNPQNTGASSSRQRKQKEVVEKDVDNVGSSSDSSKKKEVGK 241
           WGDNGY+ AGR EARPV RSNPQN+GASSSRQRK+KE VE D D   SSS S K KEVGK
Sbjct: 183 WGDNGYISAGRQEARPVHRSNPQNSGASSSRQRKKKE-VENDTD--ASSSVSPKNKEVGK 242

Query: 242 ELVGRRAKRALKREAADKAAAAKHQQHLVRLGR 272
           +L+GRRAKRALKREAADKAAAAKHQQHLVRLGR
Sbjct: 243 DLIGRRAKRALKREAADKAAAAKHQQHLVRLGR 269

[Close]

BLAST of Spo11923.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S059_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_009340 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 8.500e-83
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 1


		  
Query: 110 MLEESVCLLVRASWFTPLVVEHQDDFYDELEDILYYQYQYQYEYEHLNDEDIEDDYFHNS 169
           MLEESVCLLVRASWFTPLVVEHQDDFYDELEDILYYQYQYQYEYEHLNDEDIEDDYFHNS
Sbjct: 1   MLEESVCLLVRASWFTPLVVEHQDDFYDELEDILYYQYQYQYEYEHLNDEDIEDDYFHNS 60

Query: 170 PSLRIGNRRWGDNGYVRAGRLEARPVPRSNPQNTGASSSRQRKQKEVVEKDVDNVGSSSD 229
           PSLRIGNRRWGDNGYVRAGRLEARPVPRSNPQNTGASSSRQRKQKEVVEKDVDNVGSSSD
Sbjct: 61  PSLRIGNRRWGDNGYVRAGRLEARPVPRSNPQNTGASSSRQRKQKEVVEKDVDNVGSSSD 120

Query: 230 SSKKKEVGKELVGRRAKRALKREAADKAAAAKHQQHLVRLGRSI 274
           SSKKKEVGKELVGRRAKRALKREAADKAAAAKHQQHLVRLGRSI
Sbjct: 121 SSKKKEVGKELVGRRAKRALKREAADKAAAAKHQQHLVRLGRSI 164

[Close]

BLAST of Spo11923.1 vs. UniProtKB/TrEMBL
Match: M5X7I0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010547mg PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 1.000e-72
Identity = 151/266 (56.77%), Postives = 187/266 (70.30%), Query Frame = 1


		  
Query: 10  EHLTADLINNN----QGKMKEEESEEVERGEVSAVVIHDGVCAICLDDIELQETALVKGC 69
           + + +DLIN++    QG+M +  ++ VE+   +    H GVCAICLD+I LQETALVKGC
Sbjct: 11  DQILSDLINSSTQQHQGEM-QSNTDNVEKRCGN----HGGVCAICLDEIMLQETALVKGC 70

Query: 70  EHVYCVNCILQWATYHENPKCPQCKNPFESLSVHRSLDGNLHDYMLEESVCLLVRASWFT 129
           EH YC  CIL+W TY + P CPQCK+PFE L+VHRSLDG++HDYM EESVCLL+RA WF 
Sbjct: 71  EHAYCATCILRWVTYSQKPTCPQCKHPFEFLNVHRSLDGSIHDYMFEESVCLLLRAKWFE 130

Query: 130 PLVVEHQDDFYDELEDILYYQYQYQYEYEHLNDEDIEDDYFHNSPSLRIGNRRWGDNGYV 189
           PL+VE ++D YD+ +D       Y Y YE   D+D+++ YF +S S+RIGNRRWGDNGYV
Sbjct: 131 PLIVEEREDVYDDPDD-------YYYPYEDEEDDDLDEAYFSSSSSIRIGNRRWGDNGYV 190

Query: 190 RAGRLEARPVPRSNPQNTGASSSRQRKQKEVVEKDVDNVGSSSDSSKKKEVGKELVGRRA 249
           R GR EARPV RSN +++GASSSR+                     +KKE   +  GRRA
Sbjct: 191 RGGRQEARPVNRSNIEDSGASSSRE--------------------PRKKEAAMDKTGRRA 244

Query: 250 KRALKREAADKAAAAKHQQHLVRLGR 272
           KRALKREAADKAAAAKHQQHL RLGR
Sbjct: 251 KRALKREAADKAAAAKHQQHLARLGR 244

[Close]

BLAST of Spo11923.1 vs. UniProtKB/TrEMBL
Match: A0A061GZE8_THECC (RING/U-box superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_040934 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 3.000e-72
Identity = 151/262 (57.63%), Postives = 184/262 (70.23%), Query Frame = 1


		  
Query: 12  LTADLINNNQGKMKEEESEEVERGEVS--AVVIHDGVCAICLDDIELQETALVKGCEHVY 71
           + A+ I N    +  ++ E   +G V       H G+CAICLD I LQETALVKGCEH Y
Sbjct: 7   IDAEQIVNALPNLSLQDQEMKNKGAVGEEGCENHSGICAICLDKIVLQETALVKGCEHAY 66

Query: 72  CVNCILQWATYHENPKCPQCKNPFESLSVHRSLDGNLHDYMLEESVCLLVRASWFTPLVV 131
           CV CIL+WATY + P CPQCK+PFE L+VHRSLDG ++DYM EESVCLL+RA+WF PL+V
Sbjct: 67  CVTCILRWATYSKMPTCPQCKHPFEFLNVHRSLDGRINDYMFEESVCLLLRAAWFEPLIV 126

Query: 132 EHQDDFYDELEDILYYQYQYQYEYEHLNDEDIEDDYFHNSPSLRIGNRRWGDNGYVRAGR 191
           E +++ YD+LED  YY Y+         D+D ++ Y+ +SPSLRIGNRRWGDNGYVR+GR
Sbjct: 127 EDREELYDDLED--YYPYE--------EDDDQDEAYYASSPSLRIGNRRWGDNGYVRSGR 186

Query: 192 LEARPVPRSNPQNTGASSSRQRKQKEVVEKDVDNVGSSSDSSKKKEVGKELVGRRAKRAL 251
            EARPV RSN Q++GA SSR+                     KKKEV K  +GRRAKRAL
Sbjct: 187 QEARPVQRSNFQDSGAGSSRE--------------------PKKKEVAKSTMGRRAKRAL 238

Query: 252 KREAADKAAAAKHQQHLVRLGR 272
           KREAADKAAAAKHQ+HL+RLGR
Sbjct: 247 KREAADKAAAAKHQEHLMRLGR 238

[Close]

BLAST of Spo11923.1 vs. UniProtKB/TrEMBL
Match: A0A061GU17_THECC (RING/U-box superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_040934 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 3.000e-72
Identity = 150/252 (59.52%), Postives = 179/252 (71.03%), Query Frame = 1


		  
Query: 20  NQGKMKEEESEEVERGEVSAVVIHDGVCAICLDDIELQETALVKGCEHVYCVNCILQWAT 79
           N+G + EE  E            H G+CAICLD I LQETALVKGCEH YCV CIL+WAT
Sbjct: 29  NKGAVGEEGCEN-----------HSGICAICLDKIVLQETALVKGCEHAYCVTCILRWAT 88

Query: 80  YHENPKCPQCKNPFESLSVHRSLDGNLHDYMLEESVCLLVRASWFTPLVVEHQDDFYDEL 139
           Y + P CPQCK+PFE L+VHRSLDG ++DYM EESVCLL+RA+WF PL+VE +++ YD+L
Sbjct: 89  YSKMPTCPQCKHPFEFLNVHRSLDGRINDYMFEESVCLLLRAAWFEPLIVEDREELYDDL 148

Query: 140 EDILYYQYQYQYEYEHLNDEDIEDDYFHNSPSLRIGNRRWGDNGYVRAGRLEARPVPRSN 199
           ED  YY Y+         D+D ++ Y+ +SPSLRIGNRRWGDNGYVR+GR EARPV RSN
Sbjct: 149 ED--YYPYE--------EDDDQDEAYYASSPSLRIGNRRWGDNGYVRSGRQEARPVQRSN 208

Query: 200 PQNTGASSSRQRKQKEVVEKDVDNVGSSSDSSKKKEVGKELVGRRAKRALKREAADKAAA 259
            Q++GA SSR+                     KKKEV K  +GRRAKRALKREAADKAAA
Sbjct: 209 FQDSGAGSSRE--------------------PKKKEVAKSTMGRRAKRALKREAADKAAA 239

Query: 260 AKHQQHLVRLGR 272
           AKHQ+HL+RLGR
Sbjct: 269 AKHQEHLMRLGR 239

[Close]

BLAST of Spo11923.1 vs. TAIR (Arabidopsis)
Match: AT5G19430.1 (RING/U-box superfamily protein)

HSP 1 Score: 231.1 bits (588), Expect = 8.200e-61
Identity = 143/281 (50.89%), Postives = 175/281 (62.28%), Query Frame = 1


		  
Query: 1   MTSLTAFVDEHLTADLINN----NQGKMK-EEESEEVERGEVSAVVIHDGVCAICLDDIE 60
           M+S+T  V E    D I +    NQ K K +EE  E   G       H G CAICL +I 
Sbjct: 1   MSSVTEIVSEQQVIDGIQDLALQNQDKKKIQEEIHEPSFGN------HGGCCAICLSEIP 60

Query: 61  LQETALVKGCEHVYCVNCILQWATYHENPKCPQCKNPFESLSVHRSLDGNLHDYMLEESV 120
           LQETA+VKGCEH YCV CIL+WA+  E+P CPQCK+PF+ LSVHR+LDG++ D++ EESV
Sbjct: 61  LQETAMVKGCEHTYCVTCILRWASCKESPTCPQCKHPFDFLSVHRALDGSIEDFLFEESV 120

Query: 121 CLLVRASWFTPLVVEHQDDFYDELEDILYYQYQYQYEYEHLNDEDIEDDYFHNSPSLRIG 180
           CLL+RASWF PL V  Q  +     D     Y Y+ E     D+D+++ Y H S SLRIG
Sbjct: 121 CLLLRASWFVPLDVVEQASYSHGYHDDFDIPYDYEDE-----DDDLDEFYLHGS-SLRIG 180

Query: 181 NRRWGDNGYVRAGRLEARPVPRSNPQNTGASSSRQRKQKEVVEKDVDNVGSSSDSSKKKE 240
           NRRWG NG+VR+GR EARPV R +   + +SSS                GSSS   K K+
Sbjct: 181 NRRWGGNGFVRSGRQEARPVQRYSGSGSSSSSSS---------------GSSSSEPKDKQ 240

Query: 241 V-GKELVGRRAKRALKREAADKA----AAAKHQQHLVRLGR 272
           V      GRRAKRA+KREAA+KA    AAAKH+ HLVRLGR
Sbjct: 241 VKTTNTTGRRAKRAMKREAANKAAEVTAAAKHEAHLVRLGR 254

[Close]

BLAST of Spo11923.1 vs. TAIR (Arabidopsis)
Match: AT5G12310.1 (RING/U-box superfamily protein)

HSP 1 Score: 219.9 bits (559), Expect = 1.900e-57
Identity = 124/235 (52.77%), Postives = 151/235 (64.26%), Query Frame = 1


		  
Query: 43  HDGVCAICLDDIELQETALVKGCEHVYCVNCILQWATYHENPKCPQCKNPFESLSVHRSL 102
           H G CAICLD I LQETA+VKGCEH YCV CIL+WA+Y E P CPQCK PF+ L+VHR+L
Sbjct: 39  HGGCCAICLDTIPLQETAMVKGCEHAYCVTCILRWASYKEKPTCPQCKLPFDFLNVHRAL 98

Query: 103 DGNLHDYMLEESVCLLVRASWFTPL-VVEHQDDFYDELEDILYYQYQYQYEYEHLNDEDI 162
           DG++ D+M EESVCLL+RASWF PL  VE   D      D   Y +    EYE  +++D 
Sbjct: 99  DGSVEDFMFEESVCLLLRASWFQPLEAVERVSD-----NDNFNYDFDIPPEYEEEDEDDD 158

Query: 163 E-DDYFHNSPSLRIGNRRWGDNGYVRAGRLEARPVPRSNPQNTGASSSRQRKQKEVVEKD 222
           + D+++    SLR+GNRRWGDNG+VRAGR EARPV   N     + S             
Sbjct: 159 DLDEFYMQGSSLRLGNRRWGDNGFVRAGRQEARPVQHKNRGGQASGS------------- 218

Query: 223 VDNVGSSSDSSKKKEVGKELVGRRAKRALKREAADKA----AAAKHQQHLVRLGR 272
                SSS    K++    + GRRAKRA+KREAA+KA    AAAKH+  LVRLGR
Sbjct: 219 --EPASSSSCEPKEKTSSAITGRRAKRAMKREAANKAAEAVAAAKHEALLVRLGR 253

The following BLAST results are available for this feature:

BLAST of Spo11923.1 vs. NCBI nr
BLAST of Spo11923.1 vs. UniProtKB/TrEMBL
BLAST of Spo11923.1 vs. ExPASy Swiss-Prot
BLAST of Spo11923.1 vs. TAIR (Arabidopsis)

BLAST of Spo11923.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|731325908\|ref\|XP_010673753.1\|	1.8e-110	78.0	PREDICTED: uncharacterized pro...	[more]
gi\|902238302\|gb\|KNA25125.1\|	1.2e-82	100.	hypothetical protein SOVF_0093...	[more]
gi\|1012201829\|ref\|XP_015973404.1\|	1.8e-73	59.3	PREDICTED: uncharacterized pro...	[more]
gi\|595899827\|ref\|XP_007213836.1\|	1.5e-72	56.7	hypothetical protein PRUPE_ppa...	[more]
gi\|802558931\|ref\|XP_012065903.1\|	4.3e-72	56.8	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo11923.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8CLI5_BETVU	1.3e-110	78.0	Uncharacterized protein OS=Bet...	[more]
A0A0K9S059_SPIOL	8.5e-83	100.	Uncharacterized protein OS=Spi...	[more]
M5X7I0_PRUPE	1.0e-72	56.7	Uncharacterized protein OS=Pru...	[more]
A0A061GZE8_THECC	3.0e-72	57.6	RING/U-box superfamily protein...	[more]
A0A061GU17_THECC	3.0e-72	59.5	RING/U-box superfamily protein...	[more]

BLAST of Spo11923.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo11923.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G19430.1	8.2e-61	50.8	RING/U-box superfamily protein	[more]
AT5G12310.1	1.9e-57	52.7	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 47..90 score: 9.9
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 47..89 score: 7.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 47..90 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 44..93 score: 6.1
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 65..74 scor
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 46..96 score: 9.86

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding