Spo11969.1 (mRNA) | SpinachBase

Overview


Name	Spo11969.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	High-mobility-group family protein
Location	chr4 : 8624742 .. 8625470 (+)
Sequence length	609

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTTTGAAGATCACACCATTTCCAGTACTCCTTTCCCAGATTACCCTCACGTATGTACACCTGATAATTACTACACATAGCTACATTTCAGTTTAATTTTGATTTTGATTTTGATTGATTTATTTTAATTTAATTTAATTGACTTTTTTTGTTGTTGTTTGTTGTTGAAGATGGTAATGGAGGCGATTGGAATCCTGAGCGAGAAAGAAGGAGTGAGCAGAGATGCAATAACGAAGCACATAGAGTCAAACTACGCAGATCTACCACCAACGCACGCCACACACGTGAGTCACACGCTCGAGAAGCTCAACCAAACAGGTCAACTCATGACGTTGAAAGACGACACCTACATGCTGACGATGAAGCAACAACAACCACCAGCTGACGACGGAGACGACGACGGTGATGAGGAGGAGGAAGAAGAGGAGGAAGAAGAAGAAGAACAGCCAGTGAAGAGAGGACGTGGACGTCCACCAAAGGTGAAAGGGCCAGGACCCGTTTCTGTTGGGCTGGATTCGCCCCAACAAGGTTCAAGGCCCAGAGGAAGGCCTCCTAAGAGTAGGGATTTACTTGCCCCGGTTACCCGGCCCACTAAGCCGAGCCCTACTGGAAGGCCACGTGGCAGGCCGAAGAAGAATCCGACGGAAGTTACCGTTACTGGTGGTGGACCCGAGATTAGTGTTGGTGGTGTGAAGAGGGGTAGAGGTCGTCCAAGGAAGAGTTGA

mRNA sequence

ATGGCGTTTGAAGATCACACCATTTCCAGTACTCCTTTCCCAGATTACCCTCACATGGTAATGGAGGCGATTGGAATCCTGAGCGAGAAAGAAGGAGTGAGCAGAGATGCAATAACGAAGCACATAGAGTCAAACTACGCAGATCTACCACCAACGCACGCCACACACGTGAGTCACACGCTCGAGAAGCTCAACCAAACAGGTCAACTCATGACGTTGAAAGACGACACCTACATGCTGACGATGAAGCAACAACAACCACCAGCTGACGACGGAGACGACGACGGTGATGAGGAGGAGGAAGAAGAGGAGGAAGAAGAAGAAGAACAGCCAGTGAAGAGAGGACGTGGACGTCCACCAAAGGTGAAAGGGCCAGGACCCGTTTCTGTTGGGCTGGATTCGCCCCAACAAGGTTCAAGGCCCAGAGGAAGGCCTCCTAAGAGTAGGGATTTACTTGCCCCGGTTACCCGGCCCACTAAGCCGAGCCCTACTGGAAGGCCACGTGGCAGGCCGAAGAAGAATCCGACGGAAGTTACCGTTACTGGTGGTGGACCCGAGATTAGTGTTGGTGGTGTGAAGAGGGGTAGAGGTCGTCCAAGGAAGAGTTGA

Coding sequence (CDS)

ATGGCGTTTGAAGATCACACCATTTCCAGTACTCCTTTCCCAGATTACCCTCACATGGTAATGGAGGCGATTGGAATCCTGAGCGAGAAAGAAGGAGTGAGCAGAGATGCAATAACGAAGCACATAGAGTCAAACTACGCAGATCTACCACCAACGCACGCCACACACGTGAGTCACACGCTCGAGAAGCTCAACCAAACAGGTCAACTCATGACGTTGAAAGACGACACCTACATGCTGACGATGAAGCAACAACAACCACCAGCTGACGACGGAGACGACGACGGTGATGAGGAGGAGGAAGAAGAGGAGGAAGAAGAAGAAGAACAGCCAGTGAAGAGAGGACGTGGACGTCCACCAAAGGTGAAAGGGCCAGGACCCGTTTCTGTTGGGCTGGATTCGCCCCAACAAGGTTCAAGGCCCAGAGGAAGGCCTCCTAAGAGTAGGGATTTACTTGCCCCGGTTACCCGGCCCACTAAGCCGAGCCCTACTGGAAGGCCACGTGGCAGGCCGAAGAAGAATCCGACGGAAGTTACCGTTACTGGTGGTGGACCCGAGATTAGTGTTGGTGGTGTGAAGAGGGGTAGAGGTCGTCCAAGGAAGAGTTGA

Protein sequence

MAFEDHTISSTPFPDYPHMVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTGQLMTLKDDTYMLTMKQQQPPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGPGPVSVGLDSPQQGSRPRGRPPKSRDLLAPVTRPTKPSPTGRPRGRPKKNPTEVTVTGGGPEISVGGVKRGRGRPRKS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo11969	Spo11969	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo11969.1	Spo11969.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11969.1.exon.1	Spo11969.1.exon.1	exon
Spo11969.1.exon.2	Spo11969.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo11969.1.CDS.1	Spo11969.1.CDS.1	CDS
Spo11969.1.CDS.2	Spo11969.1.CDS.2	CDS

Homology

[Close]

BLAST of Spo11969.1 vs. NCBI nr
Match: gi|902188836|gb|KNA11239.1| (hypothetical protein SOVF_137060 [Spinacia oleracea])

HSP 1 Score: 351.3 bits (900), Expect = 1.100e-93
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


		  
Query: 19  MVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTGQLMTLKDDTY 78
           MVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTGQLMTLKDDTY
Sbjct: 1   MVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTGQLMTLKDDTY 60

Query: 79  MLTMKQQQPPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGPGPVSVGLDSPQQG 138
           MLTMKQQQPPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGPGPVSVGLDSPQQG
Sbjct: 61  MLTMKQQQPPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGPGPVSVGLDSPQQG 120

Query: 139 SRPRGRPPKSRDLLAPVTRPTKPSPTGRPRGRPKKNPTEVTVTGGGPEISVGGVKRGRGR 198
           SRPRGRPPKSRDLLAPVTRPTKPSPTGRPRGRPKKNPTEVTVTGGGPEISVGGVKRGRGR
Sbjct: 121 SRPRGRPPKSRDLLAPVTRPTKPSPTGRPRGRPKKNPTEVTVTGGGPEISVGGVKRGRGR 180

Query: 199 PRKS 203
           PRKS
Sbjct: 181 PRKS 184

[Close]

BLAST of Spo11969.1 vs. NCBI nr
Match: gi|731326089|ref|XP_010673842.1| (PREDICTED: HMG-Y-related protein A-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 164.1 bits (414), Expect = 2.600e-37
Identity = 110/198 (55.56%), Postives = 128/198 (64.65%), Query Frame = 1


		  
Query: 13  FPDYPHMVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTGQLMT 72
           FPDYP M+M AI  L+EKEG S++AI + IESNY+DLPP+HATHVSHTLEKL QTGQL+ 
Sbjct: 7   FPDYPQMIMGAIEELNEKEGSSKEAIIEFIESNYSDLPPSHATHVSHTLEKLKQTGQLLM 66

Query: 73  LKDDTYMLTMKQQQPPAD------DGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGPG 132
           LKDDTY+L         D      DG+DD D E           P+KRGRGRPPK K   
Sbjct: 67  LKDDTYILKPHHDDVDVDVDDDGHDGEDDDDVEVGPTNNNGLSLPMKRGRGRPPKPKVAL 126

Query: 133 PVSVGLDSPQQGSRPRGRPPKSR-DLLAPVTRPTKPSPTGRPRGRPKKNPTEVTVTGGGP 192
           P  V +  P   +RPRGRPPK+R D L P  RP K   +GRPRGRPKKNP    V GG  
Sbjct: 127 PPGV-VPPP---ARPRGRPPKARDDSLGPSARPIKAVSSGRPRGRPKKNP---GVEGGAS 186

Query: 193 EIS-VGGVKRGRGRPRKS 203
            +    GVKRGRGRP+K+
Sbjct: 187 VVGPTTGVKRGRGRPKKT 197

[Close]

BLAST of Spo11969.1 vs. NCBI nr
Match: gi|743784958|ref|XP_011023827.1| (PREDICTED: HMG-Y-related protein B-like [Populus euphratica])

HSP 1 Score: 126.7 bits (317), Expect = 4.600e-26
Identity = 90/200 (45.00%), Postives = 111/200 (55.50%), Query Frame = 1


		  
Query: 9   SSTPFPDYPHMVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTG 68
           SSTP P YP M+M AI  L+EKEG ++ +I+K IES + DLPP H+T +SH L K+ Q+G
Sbjct: 37  SSTP-PQYPEMIMAAIEALNEKEGSNKTSISKQIESTHPDLPPAHSTLLSHHLNKMKQSG 96

Query: 69  QLMTLKDDTYMLTMKQQQPPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGPGPV 128
           QL+ +K++ YM                         + +   P KRGRGRPPK K P P 
Sbjct: 97  QLVLVKNN-YM-------------------------KPDPNAPPKRGRGRPPKPKLPTPP 156

Query: 129 SVGLDSPQQGSRPRGRPPKSRDLLAPVTRPTKPSP---TGRPRGRPKKNPT---EVTVTG 188
                 P    RPRGRPPK RD  APV  P K +    TGRPRGRP KN T       +G
Sbjct: 157 GTVSGPP----RPRGRPPKPRDPFAPVASPKKKTTSTGTGRPRGRPPKNATAAVSAASSG 202

Query: 189 GGPEISVGGVKRGRGRPRKS 203
           GGP     G +RGRGRP K+
Sbjct: 217 GGPP---SGARRGRGRPPKA 202

[Close]

BLAST of Spo11969.1 vs. NCBI nr
Match: gi|728827053|gb|KHG07018.1| (HMG-Y-related A [Gossypium arboreum])

HSP 1 Score: 123.6 bits (309), Expect = 3.900e-25
Identity = 86/192 (44.79%), Postives = 108/192 (56.25%), Query Frame = 1


		  
Query: 10  STPFPDYPHMVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTGQ 69
           S+  PDYP M++EAI  L+EKEG S  +I KHI+S ++DLP +H+T +SH L ++ Q GQ
Sbjct: 18  SSSLPDYPQMILEAIEALNEKEGSSMSSIAKHIDSTHSDLPASHSTLLSHHLNQMKQMGQ 77

Query: 70  LMTLKDDTYMLTMKQQQPPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGPGPVS 129
           ++ L ++                            + +   P KRGRGRPPK K P P  
Sbjct: 78  IVMLNNNY--------------------------TKPDPNAPPKRGRGRPPKPKVPLPPG 137

Query: 130 VGLDSPQQGSRPRGRPPKSRDLLAPVTRPTKPSPTGRPRGRPKKNPTEVTVTGGGPEISV 189
           V + SP    RPRGRPPK +DLLAP  +P KP  TGRPRGRP K     T T   P    
Sbjct: 138 VVVSSP----RPRGRPPKPKDLLAP-PKP-KPVSTGRPRGRPPKKAKTGTATAPPPP--- 174

Query: 190 GGVKRGRGRPRK 202
            GVKRGRGRP K
Sbjct: 198 PGVKRGRGRPPK 174

[Close]

BLAST of Spo11969.1 vs. NCBI nr
Match: gi|255573726|ref|XP_002527784.1| (PREDICTED: HMG-Y-related protein B [Ricinus communis])

HSP 1 Score: 122.5 bits (306), Expect = 8.600e-25
Identity = 81/191 (42.41%), Postives = 103/191 (53.93%), Query Frame = 1


		  
Query: 14  PDYPHMVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTGQLMTL 73
           P YP M++ AI  L++K G ++ AI+K +E+ Y DLPP H T +SH L K+ Q+GQL+ +
Sbjct: 29  PQYPEMILAAIESLNDKNGSNKSAISKQMETTYPDLPPAHTTLLSHHLNKMKQSGQLVLV 88

Query: 74  KDDTYMLTMKQQQPPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGPGPVSVGLD 133
           K++ YM                         + +   P KRGRGRPPK K P P    + 
Sbjct: 89  KNN-YM-------------------------KPDPNAPPKRGRGRPPKPKAPLPPGAVIA 148

Query: 134 SPQQGSRPRGRPPKSRDLLAPVTRPTK---PSPTGRPRGRPKKNPTEVTVTGGGPEISVG 193
            P    RPRGRPPK RD  APV  P K    +PTGRPRGRP K P+    T      +  
Sbjct: 149 PP----RPRGRPPKPRDPFAPVASPKKKIATAPTGRPRGRPPKLPSAAPPTPSVSSAAAS 189

Query: 194 GVKRGRGRPRK 202
            VKRGRGRP K
Sbjct: 209 QVKRGRGRPPK 189

[Close]

BLAST of Spo11969.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVF3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_137060 PE=3 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 7.900e-94
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1


		  
Query: 19  MVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTGQLMTLKDDTY 78
           MVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTGQLMTLKDDTY
Sbjct: 1   MVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTGQLMTLKDDTY 60

Query: 79  MLTMKQQQPPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGPGPVSVGLDSPQQG 138
           MLTMKQQQPPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGPGPVSVGLDSPQQG
Sbjct: 61  MLTMKQQQPPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGPGPVSVGLDSPQQG 120

Query: 139 SRPRGRPPKSRDLLAPVTRPTKPSPTGRPRGRPKKNPTEVTVTGGGPEISVGGVKRGRGR 198
           SRPRGRPPKSRDLLAPVTRPTKPSPTGRPRGRPKKNPTEVTVTGGGPEISVGGVKRGRGR
Sbjct: 121 SRPRGRPPKSRDLLAPVTRPTKPSPTGRPRGRPKKNPTEVTVTGGGPEISVGGVKRGRGR 180

Query: 199 PRKS 203
           PRKS
Sbjct: 181 PRKS 184

[Close]

BLAST of Spo11969.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CMD0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g074450 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.800e-37
Identity = 110/198 (55.56%), Postives = 128/198 (64.65%), Query Frame = 1


		  
Query: 13  FPDYPHMVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTGQLMT 72
           FPDYP M+M AI  L+EKEG S++AI + IESNY+DLPP+HATHVSHTLEKL QTGQL+ 
Sbjct: 7   FPDYPQMIMGAIEELNEKEGSSKEAIIEFIESNYSDLPPSHATHVSHTLEKLKQTGQLLM 66

Query: 73  LKDDTYMLTMKQQQPPAD------DGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGPG 132
           LKDDTY+L         D      DG+DD D E           P+KRGRGRPPK K   
Sbjct: 67  LKDDTYILKPHHDDVDVDVDDDGHDGEDDDDVEVGPTNNNGLSLPMKRGRGRPPKPKVAL 126

Query: 133 PVSVGLDSPQQGSRPRGRPPKSR-DLLAPVTRPTKPSPTGRPRGRPKKNPTEVTVTGGGP 192
           P  V +  P   +RPRGRPPK+R D L P  RP K   +GRPRGRPKKNP    V GG  
Sbjct: 127 PPGV-VPPP---ARPRGRPPKARDDSLGPSARPIKAVSSGRPRGRPKKNP---GVEGGAS 186

Query: 193 EIS-VGGVKRGRGRPRKS 203
            +    GVKRGRGRP+K+
Sbjct: 187 VVGPTTGVKRGRGRPKKT 197

[Close]

BLAST of Spo11969.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MY18_GOSAR (HMG-Y-related A OS=Gossypium arboreum GN=F383_33871 PE=3 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 2.700e-25
Identity = 86/192 (44.79%), Postives = 108/192 (56.25%), Query Frame = 1


		  
Query: 10  STPFPDYPHMVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTGQ 69
           S+  PDYP M++EAI  L+EKEG S  +I KHI+S ++DLP +H+T +SH L ++ Q GQ
Sbjct: 18  SSSLPDYPQMILEAIEALNEKEGSSMSSIAKHIDSTHSDLPASHSTLLSHHLNQMKQMGQ 77

Query: 70  LMTLKDDTYMLTMKQQQPPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGPGPVS 129
           ++ L ++                            + +   P KRGRGRPPK K P P  
Sbjct: 78  IVMLNNNY--------------------------TKPDPNAPPKRGRGRPPKPKVPLPPG 137

Query: 130 VGLDSPQQGSRPRGRPPKSRDLLAPVTRPTKPSPTGRPRGRPKKNPTEVTVTGGGPEISV 189
           V + SP    RPRGRPPK +DLLAP  +P KP  TGRPRGRP K     T T   P    
Sbjct: 138 VVVSSP----RPRGRPPKPKDLLAP-PKP-KPVSTGRPRGRPPKKAKTGTATAPPPP--- 174

Query: 190 GGVKRGRGRPRK 202
            GVKRGRGRP K
Sbjct: 198 PGVKRGRGRPPK 174

[Close]

BLAST of Spo11969.1 vs. UniProtKB/TrEMBL
Match: B9SP65_RICCO (Histone H1, putative OS=Ricinus communis GN=RCOM_0628910 PE=3 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 6.000e-25
Identity = 81/191 (42.41%), Postives = 103/191 (53.93%), Query Frame = 1


		  
Query: 14  PDYPHMVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTGQLMTL 73
           P YP M++ AI  L++K G ++ AI+K +E+ Y DLPP H T +SH L K+ Q+GQL+ +
Sbjct: 29  PQYPEMILAAIESLNDKNGSNKSAISKQMETTYPDLPPAHTTLLSHHLNKMKQSGQLVLV 88

Query: 74  KDDTYMLTMKQQQPPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGPGPVSVGLD 133
           K++ YM                         + +   P KRGRGRPPK K P P    + 
Sbjct: 89  KNN-YM-------------------------KPDPNAPPKRGRGRPPKPKAPLPPGAVIA 148

Query: 134 SPQQGSRPRGRPPKSRDLLAPVTRPTK---PSPTGRPRGRPKKNPTEVTVTGGGPEISVG 193
            P    RPRGRPPK RD  APV  P K    +PTGRPRGRP K P+    T      +  
Sbjct: 149 PP----RPRGRPPKPRDPFAPVASPKKKIATAPTGRPRGRPPKLPSAAPPTPSVSSAAAS 189

Query: 194 GVKRGRGRPRK 202
            VKRGRGRP K
Sbjct: 209 QVKRGRGRPPK 189

[Close]

BLAST of Spo11969.1 vs. UniProtKB/TrEMBL
Match: B9HJD9_POPTR (High-mobility-group family protein OS=Populus trichocarpa GN=POPTR_0008s13170g PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.000e-24
Identity = 84/197 (42.64%), Postives = 105/197 (53.30%), Query Frame = 1


		  
Query: 9   SSTPFPDYPHMVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTG 68
           SS P P YP M+M AI  L+EKEG ++ +I+K IES + DLPP H+T +SH L K+ Q+G
Sbjct: 33  SSAP-PQYPEMIMAAIEALNEKEGSNKTSISKQIESTHPDLPPAHSTLLSHHLNKMKQSG 92

Query: 69  QLMTLKDDTYMLTMKQQQPPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGPGPV 128
           QL+ +K++ YM                         + +   P KRGRGRPPK K P P 
Sbjct: 93  QLVLVKNN-YM-------------------------KPDPNAPPKRGRGRPPKPKLPTPP 152

Query: 129 SVGLDSPQQGSRPRGRPPKSRDLLAPVTRPTKPSP---TGRPRGRPKKNPTEVTVTGGGP 188
                 P    RPRGRPPK RD  APV  P K +    TGRPRGRP KN +         
Sbjct: 153 GTVSGPP----RPRGRPPKPRDPFAPVASPKKKTTSTGTGRPRGRPPKNASTAVPAASSG 198

Query: 189 EISVGGVKRGRGRPRKS 203
                G +RGRGRP K+
Sbjct: 213 GAPPSGARRGRGRPPKA 198

[Close]

BLAST of Spo11969.1 vs. ExPASy Swiss-Prot
Match: HMGYA_ARATH (HMG-Y-related protein A OS=Arabidopsis thaliana GN=HMGA PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.000e-17
Identity = 75/207 (36.23%), Postives = 99/207 (47.83%), Query Frame = 1


		  
Query: 8   ISSTPFPDYPHMVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQT 67
           + S   P YP M+MEAI  L++K G ++  I KHIES    LPP+H T +S+ L ++ +T
Sbjct: 18  LPSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKT 77

Query: 68  GQLMTLKDDTYMLTMKQQQPPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGP-- 127
           GQL+ +K++ YM                         + + + P KRGRGRPPK K    
Sbjct: 78  GQLIMVKNN-YM-------------------------KPDPDAPPKRGRGRPPKQKTQAE 137

Query: 128 ---------GPVSVGLDSPQQGSRPRGRPPKSRDLLAPVTRPTKPSPTGRPRGRPKKNP- 187
                        V  D P    R RGRPPK +D   P  +    + +GRPRGRP K P 
Sbjct: 138 SDAAAAAVVAATVVSTDPP----RSRGRPPKPKDPSEP-PQEKVITGSGRPRGRPPKRPR 193

Query: 188 -TEVTVTGGGPEISVGGVKRGRGRPRK 202
               TV    P     G +RGRGRP K
Sbjct: 198 TDSETVAAPEPAAQATGERRGRGRPPK 193

[Close]

BLAST of Spo11969.1 vs. ExPASy Swiss-Prot
Match: HMGYA_MAIZE (HMG-Y-related protein A OS=Zea mays GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.300e-17
Identity = 71/206 (34.47%), Postives = 101/206 (49.03%), Query Frame = 1


		  
Query: 5   DHTISSTPFPDYPHMVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKL 64
           D     +P P YP M++ AI  L +K G ++ AI+K+IE  Y  LPP HA+ ++  L ++
Sbjct: 4   DEATKPSPIPPYPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAHASLLTAHLARM 63

Query: 65  NQTGQLMTLKDDTYMLTMKQQQPPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKG 124
            ++G+L+ LK++ +    +   P A                     P KRGRGRPPK + 
Sbjct: 64  KESGELVFLKNNYF----RAGAPDA---------------------PPKRGRGRPPKARD 123

Query: 125 PGPVSVGLDSPQQGSRPRGRPPKSRD-LLAPVTRPTKPSPTGRPRGRPKK--------NP 184
           P   +    SP    R RGRPPK++  L A V + T   P  +PRGRP K        +P
Sbjct: 124 PNAPAPAPKSPSSTGRGRGRPPKAKSPLEAAVKQATAGMP--KPRGRPPKKAKTDGAASP 181

Query: 185 TEVTVTGGGPEISVGGVKRGRGRPRK 202
           +         + S  G KRGRGRP K
Sbjct: 184 SPSPAPAPAGDGSTPG-KRGRGRPPK 181

[Close]

BLAST of Spo11969.1 vs. ExPASy Swiss-Prot
Match: HMGYA_SOYBN (HMG-Y-related protein A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.200e-13
Identity = 71/190 (37.37%), Postives = 93/190 (48.95%), Query Frame = 1


		  
Query: 14  PDYPHMVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTGQLMTL 73
           P YP M+++ +  L+E  G ++ AI+K+IE+ Y +LP   AT +   L K+  +G+L + 
Sbjct: 13  PPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPD--ATVLGSHLNKMKDSGEL-SF 72

Query: 74  KDDTYMLTMKQQQPPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGPGPVSVGLD 133
           K + YM                         + +   P KRGRGRPPK K P P    + 
Sbjct: 73  KQNNYM-------------------------KADPNAPPKRGRGRPPKPKTPLPPGTVVS 132

Query: 134 SPQQGSRPRGRPPKSRDLLAPVTRP-TKPSP-TGRPRGRPKKNPTEVTVTGGGPEISVGG 193
            P    RPRGRPPK  D  AP   P  K +P +GRPRGRPKK P    V    P     G
Sbjct: 133 PP----RPRGRPPK--DPNAPPKSPKAKATPGSGRPRGRPKKVPRSPAV--AAPTAVSSG 164

Query: 194 VKRGRGRPRK 202
             R RGRP K
Sbjct: 193 --RPRGRPPK 164

[Close]

BLAST of Spo11969.1 vs. ExPASy Swiss-Prot
Match: HMGYB_SOYBN (HMG-Y-related protein B (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.000e-10
Identity = 65/177 (36.72%), Postives = 85/177 (48.02%), Query Frame = 1


		  
Query: 27  LSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTGQLMTLKDDTYMLTMKQQQ 86
           L+E +G ++ AI+K+IE+ Y +LP    T +   L K+ ++G+L   K + YM       
Sbjct: 2   LNEADGSNKSAISKYIETTYGELPDE--TVLGSHLNKMKESGEL-AFKQNNYM------- 61

Query: 87  PPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGPGPVSVGLDSPQQGSRPRGRPP 146
                             + +   P KRGRGRPPK K P P    +  P    RPRGRPP
Sbjct: 62  ------------------KADPNAPPKRGRGRPPKPKVPLPPGTVVSPP----RPRGRPP 121

Query: 147 KSRDLLAPVTRP-TKPSP-TGRPRGRPKKNPTEVTVTGGGPEISVGGVKRGRGRPRK 202
           K  D  AP   P  K +P TGRPRGRPKK    V  +   P  +     R RGRP K
Sbjct: 122 K--DPNAPPKSPKAKATPATGRPRGRPKK----VARSPAVPSPTAVSTGRPRGRPPK 140

[Close]

BLAST of Spo11969.1 vs. TAIR (Arabidopsis)
Match: AT1G14900.1 (high mobility group A)

HSP 1 Score: 91.7 bits (226), Expect = 5.700e-19
Identity = 75/207 (36.23%), Postives = 99/207 (47.83%), Query Frame = 1


		  
Query: 8   ISSTPFPDYPHMVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQT 67
           + S   P YP M+MEAI  L++K G ++  I KHIES    LPP+H T +S+ L ++ +T
Sbjct: 18  LPSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKT 77

Query: 68  GQLMTLKDDTYMLTMKQQQPPADDGDDDGDEEEEEEEEEEEEQPVKRGRGRPPKVKGP-- 127
           GQL+ +K++ YM                         + + + P KRGRGRPPK K    
Sbjct: 78  GQLIMVKNN-YM-------------------------KPDPDAPPKRGRGRPPKQKTQAE 137

Query: 128 ---------GPVSVGLDSPQQGSRPRGRPPKSRDLLAPVTRPTKPSPTGRPRGRPKKNP- 187
                        V  D P    R RGRPPK +D   P  +    + +GRPRGRP K P 
Sbjct: 138 SDAAAAAVVAATVVSTDPP----RSRGRPPKPKDPSEP-PQEKVITGSGRPRGRPPKRPR 193

Query: 188 -TEVTVTGGGPEISVGGVKRGRGRPRK 202
               TV    P     G +RGRGRP K
Sbjct: 198 TDSETVAAPEPAAQATGERRGRGRPPK 193

[Close]

BLAST of Spo11969.1 vs. TAIR (Arabidopsis)
Match: AT1G48620.1 (high mobility group A5)

HSP 1 Score: 62.0 bits (149), Expect = 4.900e-10
Identity = 70/211 (33.18%), Postives = 99/211 (46.92%), Query Frame = 1


		  
Query: 10  STPFPDYPHMVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTGQ 69
           S   P Y  M+  AI  L+E +G S+ AI+++IE  Y  +P  H   ++H L+ L  +G 
Sbjct: 72  SISHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGI 131

Query: 70  LMTLKDDTYMLTMKQQQPPADDGDDDGDEEEEEEEEEEEE------------QPVKRGRG 129
           L+ +K  +Y L      PP        +    +    E +            Q +KRGRG
Sbjct: 132 LVMVK-KSYKLASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPVLASSTPQTIKRGRG 191

Query: 130 RPPKVK----GPGPVSVGLDSPQQGSRPRGRPPKSRDLLAPVTRPTKP-SPTGRPRGRPK 189
           RPPK K     P P++ G  + +Q   P  RP + +  + P   P +P  P  RP GRP+
Sbjct: 192 RPPKAKPDVVQPQPLTNGKLTWEQSELPVSRPEEIQ--IQPPQLPLQPQQPVKRPPGRPR 251

Query: 190 KNPTEVTVTGGGPEISVGG----VKRGRGRP 200
           K+ T  TV    P  SV G    VKR RGRP
Sbjct: 252 KDGTSPTVK---PAASVSGGVETVKR-RGRP 275

[Close]

BLAST of Spo11969.1 vs. TAIR (Arabidopsis)
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.900e-6
Identity = 65/208 (31.25%), Postives = 95/208 (45.67%), Query Frame = 1


		  
Query: 10  STPFPDYPHMVMEAIGILSEKEGVSRDAITKHIESNYADLPPTHATHVSHTLEKLNQTGQ 69
           S P P Y  M+  AI  L+E +G S+ AI+++IE  Y  L   HA  ++H L+ L  +G 
Sbjct: 62  SMPHPPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGV 121

Query: 70  LMTLKDDTYMLTMKQQQP--------PADDGDDDGDEE------EEEEEEEEEEQPVKRG 129
           L  +K  +Y +      P         A  G D    E       +        QP+KRG
Sbjct: 122 LSMVK-KSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMASGSASQPLKRG 181

Query: 130 RGRPPKVKGPG-PVSVGLDSPQQGSRPRGRPP-KSRDLLAPVTRPTKPSPTG-RPRGRPK 189
           RGRPPK K    P  +    P    +  G+P  + + + +PV  PT  + +  R  GRP+
Sbjct: 182 RGRPPKPKPESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVTESAKRGPGRPR 241

Query: 190 KNPTEVTVTGGGPEISV-GGVKRGRGRP 200
           KN +    T    + SV  G+ + RGRP
Sbjct: 242 KNGSAAPATAPIVQASVMAGIMKRRGRP 268

The following BLAST results are available for this feature:

BLAST of Spo11969.1 vs. NCBI nr
BLAST of Spo11969.1 vs. UniProtKB/TrEMBL
BLAST of Spo11969.1 vs. ExPASy Swiss-Prot
BLAST of Spo11969.1 vs. TAIR (Arabidopsis)

BLAST of Spo11969.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902188836\|gb\|KNA11239.1\|	1.1e-93	100.	hypothetical protein SOVF_1370...	[more]
gi\|731326089\|ref\|XP_010673842.1\|	2.6e-37	55.5	PREDICTED: HMG-Y-related prote...	[more]
gi\|743784958\|ref\|XP_011023827.1\|	4.6e-26	45.0	PREDICTED: HMG-Y-related prote...	[more]
gi\|728827053\|gb\|KHG07018.1\|	3.9e-25	44.7	HMG-Y-related A [Gossypium arb...	[more]
gi\|255573726\|ref\|XP_002527784.1\|	8.6e-25	42.4	PREDICTED: HMG-Y-related prote...	[more]

BLAST of Spo11969.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QVF3_SPIOL	7.9e-94	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CMD0_BETVU	1.8e-37	55.5	Uncharacterized protein OS=Bet...	[more]
A0A0B0MY18_GOSAR	2.7e-25	44.7	HMG-Y-related A OS=Gossypium a...	[more]
B9SP65_RICCO	6.0e-25	42.4	Histone H1, putative OS=Ricinu...	[more]
B9HJD9_POPTR	1.0e-24	42.6	High-mobility-group family pro...	[more]

BLAST of Spo11969.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4


Match Name	E-value	Identity	Description
HMGYA_ARATH	1.0e-17	36.2	HMG-Y-related protein A OS=Ara...	[more]
HMGYA_MAIZE	1.3e-17	34.4	HMG-Y-related protein A OS=Zea...	[more]
HMGYA_SOYBN	1.2e-13	37.3	HMG-Y-related protein A OS=Gly...	[more]
HMGYB_SOYBN	6.0e-10	36.7	HMG-Y-related protein B (Fragm...	[more]

BLAST of Spo11969.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT1G14900.1	5.7e-19	36.2	high mobility group A	[more]
AT1G48620.1	4.9e-10	33.1	high mobility group A5	[more]
AT3G18035.1	1.9e-6	31.2	winged-helix DNA-binding trans...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 111..123 score: 8.7E-10coord: 154..173 score: 8.7E-10coord: 141..152 score: 8.7
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 14..74 score: 2.8
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 10..76 score: 8.
IPR005818	Linker histone H1/H5, domain H15	PROFILE	PS51504	H15	coord: 12..82 score: 18
IPR011991	Winged helix-turn-helix DNA-binding domain	GENE3D	1.10.10.10		coord: 12..87 score: 3.7
IPR011991	Winged helix-turn-helix DNA-binding domain	unknown	SSF46785	"Winged helix" DNA-binding domain	coord: 9..83 score: 6.53
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 113..123 score: 5.1E-14coord: 163..173 score: 5.1E-14coord: 137..148 score: 5.1
IPR017956	AT hook, DNA-binding motif	PFAM	PF02178	AT_hook	coord: 140..150 score: 0.041coord: 113..124 score: 0.82coord: 165..176 score: 0.053coord: 193..202 score:
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 139..151 score: 0.73coord: 165..177 score: 0.58coord: 113..125 score:
None	No IPR available	PANTHER	PTHR11467	HISTONE H1/H5	coord: 110..201 score: 3.7E-33coord: 10..80 score: 3.7

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0000785	chromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding