Spo12232.1 (mRNA) | SpinachBase

Overview


Name	Spo12232.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RNA binding protein
Location	Super_scaffold_104 : 1127844 .. 1128581 (-)
Sequence length	738

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGACAGTGACGAAGACGATACCTTCTACTACCGCTACACCACCCCCACATCTGGTCACTCCGCCACCTCCTCCTCCACCACCACCACCACCAAGCGTAGTAGCGGAAGTGGGGGCTTGGCTCCCTCAAAGTCAACTGTCTATGTTAGCAATATCGACTTCAACCTCACGAACTCCGACCTCTTCACCATCTTCTCCACCTTCGGAAAGGTCGCCCGTGTCACCATTCTTAAGGACCACGCCACTCGCCGTAGCCGCGGCGTTGCCTTCGTCCTCTTCGTCGCCCGTGACGACGCTGTTTCCGCTGCCCGCCAGATGAACGGAAAAATCCTCAATGGCCGAACCCTAAGTGCTTCAATTGCGTCTGACAACGGCCGTGCAGCTGAATTCATTCGTCGTCGCGTTTATAAGGACAAGTCCAGGTGTTATGAGTGCGGGGAGGAGGGTCATCTGAGCTATGAATGTCCCAAAAATCAGTTGGGTCCCAGGGAGCGGCCTGTTCCTAAGAAGGGTAGGAGAGAGAAAGAGCAGAGGAGGAAGGAGGATGAGGAAGAGGAGGCGAGAGAAGGAGATGAAGAAGAGGTTGCATTTGAGGAGGATAACTGGGCTTCTGTGGTTGATAATGCTGCTGATCAAAGGTTGTTGATGGGACATGAAGAACAACAAAAATTGGGGAAAGAGAAGAAGGTGAAGAAAGCTAGCTATTTCAGTGACGAGAGTGGGGAGGAGGATTGA

mRNA sequence

ATGGGTGACAGTGACGAAGACGATACCTTCTACTACCGCTACACCACCCCCACATCTGGTCACTCCGCCACCTCCTCCTCCACCACCACCACCACCAAGCGTAGTAGCGGAAGTGGGGGCTTGGCTCCCTCAAAGTCAACTGTCTATGTTAGCAATATCGACTTCAACCTCACGAACTCCGACCTCTTCACCATCTTCTCCACCTTCGGAAAGGTCGCCCGTGTCACCATTCTTAAGGACCACGCCACTCGCCGTAGCCGCGGCGTTGCCTTCGTCCTCTTCGTCGCCCGTGACGACGCTGTTTCCGCTGCCCGCCAGATGAACGGAAAAATCCTCAATGGCCGAACCCTAAGTGCTTCAATTGCGTCTGACAACGGCCGTGCAGCTGAATTCATTCGTCGTCGCGTTTATAAGGACAAGTCCAGGTGTTATGAGTGCGGGGAGGAGGGTCATCTGAGCTATGAATGTCCCAAAAATCAGTTGGGTCCCAGGGAGCGGCCTGTTCCTAAGAAGGGTAGGAGAGAGAAAGAGCAGAGGAGGAAGGAGGATGAGGAAGAGGAGGCGAGAGAAGGAGATGAAGAAGAGGTTGCATTTGAGGAGGATAACTGGGCTTCTGTGGTTGATAATGCTGCTGATCAAAGGTTGTTGATGGGACATGAAGAACAACAAAAATTGGGGAAAGAGAAGAAGGTGAAGAAAGCTAGCTATTTCAGTGACGAGAGTGGGGAGGAGGATTGA

Coding sequence (CDS)

ATGGGTGACAGTGACGAAGACGATACCTTCTACTACCGCTACACCACCCCCACATCTGGTCACTCCGCCACCTCCTCCTCCACCACCACCACCACCAAGCGTAGTAGCGGAAGTGGGGGCTTGGCTCCCTCAAAGTCAACTGTCTATGTTAGCAATATCGACTTCAACCTCACGAACTCCGACCTCTTCACCATCTTCTCCACCTTCGGAAAGGTCGCCCGTGTCACCATTCTTAAGGACCACGCCACTCGCCGTAGCCGCGGCGTTGCCTTCGTCCTCTTCGTCGCCCGTGACGACGCTGTTTCCGCTGCCCGCCAGATGAACGGAAAAATCCTCAATGGCCGAACCCTAAGTGCTTCAATTGCGTCTGACAACGGCCGTGCAGCTGAATTCATTCGTCGTCGCGTTTATAAGGACAAGTCCAGGTGTTATGAGTGCGGGGAGGAGGGTCATCTGAGCTATGAATGTCCCAAAAATCAGTTGGGTCCCAGGGAGCGGCCTGTTCCTAAGAAGGGTAGGAGAGAGAAAGAGCAGAGGAGGAAGGAGGATGAGGAAGAGGAGGCGAGAGAAGGAGATGAAGAAGAGGTTGCATTTGAGGAGGATAACTGGGCTTCTGTGGTTGATAATGCTGCTGATCAAAGGTTGTTGATGGGACATGAAGAACAACAAAAATTGGGGAAAGAGAAGAAGGTGAAGAAAGCTAGCTATTTCAGTGACGAGAGTGGGGAGGAGGATTGA

Protein sequence

MGDSDEDDTFYYRYTTPTSGHSATSSSTTTTTKRSSGSGGLAPSKSTVYVSNIDFNLTNSDLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQMNGKILNGRTLSASIASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECPKNQLGPRERPVPKKGRREKEQRRKEDEEEEAREGDEEEVAFEEDNWASVVDNAADQRLLMGHEEQQKLGKEKKVKKASYFSDESGEED

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo12232	Spo12232	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo12232.1	Spo12232.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12232.1.CDS.1	Spo12232.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12232.1.exon.1	Spo12232.1.exon.1	exon

Homology

[Close]

BLAST of Spo12232.1 vs. NCBI nr
Match: gi|902189922|gb|KNA11500.1| (hypothetical protein SOVF_134680 [Spinacia oleracea])

HSP 1 Score: 455.7 bits (1171), Expect = 5.200e-125
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 1


		  
Query: 1   MGDSDEDDTFYYRYTTPTSGHSATSSSTTTTTKRSSGSGGLAPSKSTVYVSNIDFNLTNS 60
           MGDSDEDDTFYYRYTTPTSGHSATSSSTTTTTKRSSGSGGLAPSKSTVYVSNIDFNLTNS
Sbjct: 1   MGDSDEDDTFYYRYTTPTSGHSATSSSTTTTTKRSSGSGGLAPSKSTVYVSNIDFNLTNS 60

Query: 61  DLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQMNGKILNGRTLSAS 120
           DLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQMNGKILNGRTLSAS
Sbjct: 61  DLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQMNGKILNGRTLSAS 120

Query: 121 IASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECPKNQLGPRERPVPKKGRREKEQRR 180
           IASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECPKNQLGPRERPVPKKGRREKEQRR
Sbjct: 121 IASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECPKNQLGPRERPVPKKGRREKEQRR 180

Query: 181 KEDEEEEAREGDEEEVAFEEDNWASVVDNAADQRLLMGHEEQQKLGKEKKVKKASYFSDE 240
           KEDEEEEAREGDEEEVAFEEDNWASVVDNAADQRLLMGHEEQQKLGKEKKVKKASYFSDE
Sbjct: 181 KEDEEEEAREGDEEEVAFEEDNWASVVDNAADQRLLMGHEEQQKLGKEKKVKKASYFSDE 240

Query: 241 SGEED 246
           SGEED
Sbjct: 241 SGEED 245

[Close]

BLAST of Spo12232.1 vs. NCBI nr
Match: gi|731335890|ref|XP_010678964.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 337.4 bits (864), Expect = 2.100e-89
Identity = 195/247 (78.95%), Postives = 214/247 (86.64%), Query Frame = 1


		  
Query: 1   MGDSDEDDTFYYRYTTPTSGHSATSSSTTTTTKRSSGSGGLAPSKSTVYVSNIDFNLTNS 60
           MGDSDED+T YYRYTTPT     +  S++TTTKR  GSGGLAPSKSTVYVSN+D+NLTNS
Sbjct: 1   MGDSDEDETLYYRYTTPT----PSQPSSSTTTKR--GSGGLAPSKSTVYVSNLDYNLTNS 60

Query: 61  DLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQMNGKILNGRTLSAS 120
           DLFTIFSTFGKVARVTI K   TR SRG+AF+LFV+R+DAVSAARQMNGKILNGRTL+AS
Sbjct: 61  DLFTIFSTFGKVARVTIRKHPTTRLSRGIAFILFVSRNDAVSAARQMNGKILNGRTLTAS 120

Query: 121 IASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECPKNQLGPRERPVPKKGRREKEQRR 180
           IA+DNGRA EFIRRRVYKDKSRCYECGEEGHLSYECP+NQLG RERPVPKKGRRE EQR+
Sbjct: 121 IAADNGRAPEFIRRRVYKDKSRCYECGEEGHLSYECPRNQLGNRERPVPKKGRRETEQRK 180

Query: 181 KEDEEEEAREGDEEEVAF-EEDNWASVVDNAADQRLLMGHEEQQKLGKEKKVKK-ASYFS 240
           K + E EA    EEE+ + EEDNWASVVD+ ADQRLLMG  EQ+KLGK KKVKK  SYFS
Sbjct: 181 KTETEAEAGAEAEEEIDWNEEDNWASVVDSGADQRLLMG-VEQEKLGKGKKVKKNPSYFS 240

Query: 241 DESGEED 246
           DESGEED
Sbjct: 241 DESGEED 240

[Close]

BLAST of Spo12232.1 vs. NCBI nr
Match: gi|225448910|ref|XP_002265627.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Vitis vinifera])

HSP 1 Score: 299.7 bits (766), Expect = 4.800e-78
Identity = 170/246 (69.11%), Postives = 198/246 (80.49%), Query Frame = 1


		  
Query: 3   DSDEDDTFYYRYTTPTSGHSATSSSTTTTTKRSSGSGGLAPSKSTVYVSNIDFNLTNSDL 62
           DS+ED+T YYRY + +  +    S+++   KRSSGSG LAPSKSTVYVSN+D+ LTNSDL
Sbjct: 8   DSEEDETLYYRYASSSIPNPNPKSNSSKLQKRSSGSGSLAPSKSTVYVSNLDYTLTNSDL 67

Query: 63  FTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQMNGKILNGRTLSASIA 122
           FTIFSTFGKVA+VTILKD  TR SRGVAFVLFV+RD+A++AAR+MNGK+LN RTL+ASIA
Sbjct: 68  FTIFSTFGKVAKVTILKDRHTRHSRGVAFVLFVSRDEAIAAAREMNGKVLNKRTLTASIA 127

Query: 123 SDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECPKNQLGPRERPVPKKGRREK---EQR 182
           +DNGRAAEFIRRRVYKDKSRCYECGE GHLSYECP+NQLGPRERPVPK+ RR +   E R
Sbjct: 128 ADNGRAAEFIRRRVYKDKSRCYECGEGGHLSYECPRNQLGPRERPVPKRSRRGQGGSEAR 187

Query: 183 RKEDEEEEAREGDEEEVAFEEDNWASVVDNAADQRLLMGHEEQQKLGKEKKVKKASYFSD 242
           +  D +    +G E   AFE+DNWASVVD  ADQRLL G E  +   K KK KKASYFSD
Sbjct: 188 QNGDHDNGGSDGGE---AFEDDNWASVVDTGADQRLLKGSEGLEMRKKGKKEKKASYFSD 247

Query: 243 ESGEED 246
           ES EE+
Sbjct: 248 ESDEEE 250

[Close]

BLAST of Spo12232.1 vs. NCBI nr
Match: gi|659113349|ref|XP_008456528.1| (PREDICTED: zinc finger CCHC-type and RNA-binding motif-containing protein 1 [Cucumis melo])

HSP 1 Score: 284.3 bits (726), Expect = 2.100e-73
Identity = 164/254 (64.57%), Postives = 195/254 (76.77%), Query Frame = 1


		  
Query: 3   DSDEDDTFYYRYTTPTSG----------HSATSSSTTTTTKRSSGSGGLAPSKSTVYVSN 62
           DSDED+TFYYRY +  S           H ++ S + ++TK   GSGGL PSKSTVYVSN
Sbjct: 14  DSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSGGLVPSKSTVYVSN 73

Query: 63  IDFNLTNSDLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQMNGKIL 122
            D++LTNSDL T+FSTFGK+ARVT+LKD  TR+SRGVAFV F+++DDAV AA+QM+GKIL
Sbjct: 74  FDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDDAVKAAKQMHGKIL 133

Query: 123 NGRTLSASIASDNGRAAEFIRRRVYKDKSRCYECGE-EGHLSYECPKNQLGPRERPVPKK 182
           NGR L A+IA+DNGRAAEFIR+RVYKDKSRCYECG  +GHLSYECPKNQLGPRERP PK+
Sbjct: 134 NGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKR 193

Query: 183 GRREKEQRRKEDEEEEAREGDEEEVAFEEDNWASVVDNAADQRLLMGHEEQQKLGKEKKV 242
           GRR     R E++      G +   AFE+DNWASVVD  ADQRLL G E    + ++KK 
Sbjct: 194 GRRGGVGARHEED-----WGSDVGEAFEDDNWASVVDGDADQRLLTGGE---NIVEKKKA 253

Query: 243 KKASYFSDESGEED 246
           KKASYFSDESGE+D
Sbjct: 254 KKASYFSDESGEDD 259

[Close]

BLAST of Spo12232.1 vs. NCBI nr
Match: gi|823229932|ref|XP_012447703.1| (PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like [Gossypium raimondii])

HSP 1 Score: 280.8 bits (717), Expect = 2.300e-72
Identity = 163/252 (64.68%), Postives = 199/252 (78.97%), Query Frame = 1


		  
Query: 3   DSDEDDTFYYRYTTPTSGHSATSSSTTTTTKRSSG----SGGLAPSKSTVYVSNIDFNLT 62
           DSDED+TFY+RY++  +  S++SS+    T +S+G    SGGLAPSKST+YVSN+D++LT
Sbjct: 10  DSDEDETFYFRYSSAVAPPSSSSSNPNLATSKSTGGGGGSGGLAPSKSTLYVSNLDYSLT 69

Query: 63  NSDLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQMNGKILNGRTLS 122
           NSDL T+FSTFGK+ARVT+LKD ATR S+GVAFV FV+R+DA+SAA  M+GKILNGRTLS
Sbjct: 70  NSDLHTLFSTFGKIARVTVLKDRATRNSKGVAFVQFVSREDALSAASVMHGKILNGRTLS 129

Query: 123 ASIASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECPKNQLGPRERPVPKKGRR---- 182
           ASIA DNGRA EFI++RVYKDKSRCYECG  GHLSYECPKNQLGPRERPVPKKGRR    
Sbjct: 130 ASIAVDNGRAPEFIKKRVYKDKSRCYECGAGGHLSYECPKNQLGPRERPVPKKGRRGGGG 189

Query: 183 -EKEQRRKEDEEEEAREGDEEEVAFEEDNWASVVDNAADQRLLMGHEEQQKLGKEKKVKK 242
            EK +   +  EEE+  G+     FEE+NWASVVD AA++RL      ++K  K+K  +K
Sbjct: 190 GEKREDGGDWGEEESEGGE----GFEEENWASVVDGAAEERLRKSEMAEEK--KKKMTRK 249

Query: 243 ASYFSDESGEED 246
           ASYFSDES EE+
Sbjct: 250 ASYFSDESDEEE 255

[Close]

BLAST of Spo12232.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QW68_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_134680 PE=4 SV=1)

HSP 1 Score: 455.7 bits (1171), Expect = 3.600e-125
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 1


		  
Query: 1   MGDSDEDDTFYYRYTTPTSGHSATSSSTTTTTKRSSGSGGLAPSKSTVYVSNIDFNLTNS 60
           MGDSDEDDTFYYRYTTPTSGHSATSSSTTTTTKRSSGSGGLAPSKSTVYVSNIDFNLTNS
Sbjct: 1   MGDSDEDDTFYYRYTTPTSGHSATSSSTTTTTKRSSGSGGLAPSKSTVYVSNIDFNLTNS 60

Query: 61  DLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQMNGKILNGRTLSAS 120
           DLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQMNGKILNGRTLSAS
Sbjct: 61  DLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQMNGKILNGRTLSAS 120

Query: 121 IASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECPKNQLGPRERPVPKKGRREKEQRR 180
           IASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECPKNQLGPRERPVPKKGRREKEQRR
Sbjct: 121 IASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECPKNQLGPRERPVPKKGRREKEQRR 180

Query: 181 KEDEEEEAREGDEEEVAFEEDNWASVVDNAADQRLLMGHEEQQKLGKEKKVKKASYFSDE 240
           KEDEEEEAREGDEEEVAFEEDNWASVVDNAADQRLLMGHEEQQKLGKEKKVKKASYFSDE
Sbjct: 181 KEDEEEEAREGDEEEVAFEEDNWASVVDNAADQRLLMGHEEQQKLGKEKKVKKASYFSDE 240

Query: 241 SGEED 246
           SGEED
Sbjct: 241 SGEED 245

[Close]

BLAST of Spo12232.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C930_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118550 PE=4 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.400e-89
Identity = 195/247 (78.95%), Postives = 214/247 (86.64%), Query Frame = 1


		  
Query: 1   MGDSDEDDTFYYRYTTPTSGHSATSSSTTTTTKRSSGSGGLAPSKSTVYVSNIDFNLTNS 60
           MGDSDED+T YYRYTTPT     +  S++TTTKR  GSGGLAPSKSTVYVSN+D+NLTNS
Sbjct: 1   MGDSDEDETLYYRYTTPT----PSQPSSSTTTKR--GSGGLAPSKSTVYVSNLDYNLTNS 60

Query: 61  DLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQMNGKILNGRTLSAS 120
           DLFTIFSTFGKVARVTI K   TR SRG+AF+LFV+R+DAVSAARQMNGKILNGRTL+AS
Sbjct: 61  DLFTIFSTFGKVARVTIRKHPTTRLSRGIAFILFVSRNDAVSAARQMNGKILNGRTLTAS 120

Query: 121 IASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECPKNQLGPRERPVPKKGRREKEQRR 180
           IA+DNGRA EFIRRRVYKDKSRCYECGEEGHLSYECP+NQLG RERPVPKKGRRE EQR+
Sbjct: 121 IAADNGRAPEFIRRRVYKDKSRCYECGEEGHLSYECPRNQLGNRERPVPKKGRRETEQRK 180

Query: 181 KEDEEEEAREGDEEEVAF-EEDNWASVVDNAADQRLLMGHEEQQKLGKEKKVKK-ASYFS 240
           K + E EA    EEE+ + EEDNWASVVD+ ADQRLLMG  EQ+KLGK KKVKK  SYFS
Sbjct: 181 KTETEAEAGAEAEEEIDWNEEDNWASVVDSGADQRLLMG-VEQEKLGKGKKVKKNPSYFS 240

Query: 241 DESGEED 246
           DESGEED
Sbjct: 241 DESGEED 240

[Close]

BLAST of Spo12232.1 vs. UniProtKB/TrEMBL
Match: A5AKR9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g05210 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 3.300e-78
Identity = 170/246 (69.11%), Postives = 198/246 (80.49%), Query Frame = 1


		  
Query: 3   DSDEDDTFYYRYTTPTSGHSATSSSTTTTTKRSSGSGGLAPSKSTVYVSNIDFNLTNSDL 62
           DS+ED+T YYRY + +  +    S+++   KRSSGSG LAPSKSTVYVSN+D+ LTNSDL
Sbjct: 8   DSEEDETLYYRYASSSIPNPNPKSNSSKLQKRSSGSGSLAPSKSTVYVSNLDYTLTNSDL 67

Query: 63  FTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQMNGKILNGRTLSASIA 122
           FTIFSTFGKVA+VTILKD  TR SRGVAFVLFV+RD+A++AAR+MNGK+LN RTL+ASIA
Sbjct: 68  FTIFSTFGKVAKVTILKDRHTRHSRGVAFVLFVSRDEAIAAAREMNGKVLNKRTLTASIA 127

Query: 123 SDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECPKNQLGPRERPVPKKGRREK---EQR 182
           +DNGRAAEFIRRRVYKDKSRCYECGE GHLSYECP+NQLGPRERPVPK+ RR +   E R
Sbjct: 128 ADNGRAAEFIRRRVYKDKSRCYECGEGGHLSYECPRNQLGPRERPVPKRSRRGQGGSEAR 187

Query: 183 RKEDEEEEAREGDEEEVAFEEDNWASVVDNAADQRLLMGHEEQQKLGKEKKVKKASYFSD 242
           +  D +    +G E   AFE+DNWASVVD  ADQRLL G E  +   K KK KKASYFSD
Sbjct: 188 QNGDHDNGGSDGGE---AFEDDNWASVVDTGADQRLLKGSEGLEMRKKGKKEKKASYFSD 247

Query: 243 ESGEED 246
           ES EE+
Sbjct: 248 ESDEEE 250

[Close]

BLAST of Spo12232.1 vs. UniProtKB/TrEMBL
Match: A0A0D2TUZ0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G310500 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.600e-72
Identity = 163/252 (64.68%), Postives = 199/252 (78.97%), Query Frame = 1


		  
Query: 3   DSDEDDTFYYRYTTPTSGHSATSSSTTTTTKRSSG----SGGLAPSKSTVYVSNIDFNLT 62
           DSDED+TFY+RY++  +  S++SS+    T +S+G    SGGLAPSKST+YVSN+D++LT
Sbjct: 10  DSDEDETFYFRYSSAVAPPSSSSSNPNLATSKSTGGGGGSGGLAPSKSTLYVSNLDYSLT 69

Query: 63  NSDLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQMNGKILNGRTLS 122
           NSDL T+FSTFGK+ARVT+LKD ATR S+GVAFV FV+R+DA+SAA  M+GKILNGRTLS
Sbjct: 70  NSDLHTLFSTFGKIARVTVLKDRATRNSKGVAFVQFVSREDALSAASVMHGKILNGRTLS 129

Query: 123 ASIASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECPKNQLGPRERPVPKKGRR---- 182
           ASIA DNGRA EFI++RVYKDKSRCYECG  GHLSYECPKNQLGPRERPVPKKGRR    
Sbjct: 130 ASIAVDNGRAPEFIKKRVYKDKSRCYECGAGGHLSYECPKNQLGPRERPVPKKGRRGGGG 189

Query: 183 -EKEQRRKEDEEEEAREGDEEEVAFEEDNWASVVDNAADQRLLMGHEEQQKLGKEKKVKK 242
            EK +   +  EEE+  G+     FEE+NWASVVD AA++RL      ++K  K+K  +K
Sbjct: 190 GEKREDGGDWGEEESEGGE----GFEEENWASVVDGAAEERLRKSEMAEEK--KKKMTRK 249

Query: 243 ASYFSDESGEED 246
           ASYFSDES EE+
Sbjct: 250 ASYFSDESDEEE 255

[Close]

BLAST of Spo12232.1 vs. UniProtKB/TrEMBL
Match: A0A067KDZ5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16159 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 2.100e-72
Identity = 160/243 (65.84%), Postives = 196/243 (80.66%), Query Frame = 1


		  
Query: 3   DSDEDDTFYYRYTTPTSGHSATSSSTTTTTKRSSGSGGLAPSKSTVYVSNIDFNLTNSDL 62
           DSDED+TFYYRY++     S +SS+ +    +S+GS GLAPSKST+YVSN+D++LTNSDL
Sbjct: 8   DSDEDETFYYRYSSAPQPPS-SSSNPSKPNPKSNGSDGLAPSKSTLYVSNLDYSLTNSDL 67

Query: 63  FTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQMNGKILNGRTLSASIA 122
            T+FSTFGK+ARVT+LKD  +R+S+GVAF+ FV+R+DAVSAARQM+ KILNGRTLSASIA
Sbjct: 68  HTLFSTFGKIARVTVLKDRVSRQSKGVAFIQFVSRNDAVSAARQMDKKILNGRTLSASIA 127

Query: 123 SDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECPKNQLGPRERPVPKKGRREKEQRRKE 182
           +DNGRA EFI++RVYKDKSRCYECGE GHLSYECP+NQLG RERPV K+GR +  Q R+E
Sbjct: 128 ADNGRAPEFIKKRVYKDKSRCYECGENGHLSYECPRNQLGARERPVAKRGRGDGGQGRRE 187

Query: 183 DEEEEAREGDEEEVAFEEDNWASVVDNAADQRLLMGHEEQQKLGKEKKVKKASYFSDESG 242
           +E E+          FEE+NWASVVD  AD+RLL   EE +   + KKVKKASYFSDES 
Sbjct: 188 EEWEDGE-------VFEEENWASVVDGDADERLLSRGEETKV--ERKKVKKASYFSDESD 240

Query: 243 EED 246
           EE+
Sbjct: 248 EEE 240

[Close]

BLAST of Spo12232.1 vs. ExPASy Swiss-Prot
Match: U1131_ARATH (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana GN=SNRNP31 PE=2 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.600e-70
Identity = 158/254 (62.20%), Postives = 194/254 (76.38%), Query Frame = 1


		  
Query: 3   DSDEDDTFYYRYTT----PTSGHSATSSSTTTTTKRSSGSGGLAPSKSTVYVSNIDFNLT 62
           D +EDDTFYYRY++    P S      SS+  ++    GSGGLAPSKST+YVSN+DF+LT
Sbjct: 10  DDEEDDTFYYRYSSVAAPPPSNPKHQPSSSAKSSAPGGGSGGLAPSKSTLYVSNLDFSLT 69

Query: 63  NSDLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQMNGKILNGRTLS 122
           NSD+ T+FSTFGKVARVT+LKD  TR+SRGVAFVL+V+R+DA  AAR M+ KILNGR L+
Sbjct: 70  NSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLT 129

Query: 123 ASIASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECPKNQLGPRERPVP--KKGRREK 182
            SIA+DNGRA+EFI++RVYKDKSRCYECG+EGHLSYECPKNQLGPRERP P  K+GRR++
Sbjct: 130 VSIAADNGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRERPPPPKKRGRRKE 189

Query: 183 EQRRKEDEEEEAREGD----EEEVAFEEDNWASVVDNAADQRLLMGH-EEQQKLGKEKKV 242
           E+   E+    A        EEE  FEE+NWASVVDN A +RL     EE+++   ++K 
Sbjct: 190 EEGEAEEISWSAAAPSLAVAEEE--FEEENWASVVDNEAGERLRKREAEEEEERRMKRKE 249

Query: 243 KKASYFSDESGEED 246
           KK SYFSDES +ED
Sbjct: 250 KKVSYFSDESDDED 261

[Close]

BLAST of Spo12232.1 vs. ExPASy Swiss-Prot
Match: ZCRB1_BOVIN (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Bos taurus GN=ZCRB1 PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.400e-45
Identity = 110/219 (50.23%), Postives = 144/219 (65.75%), Query Frame = 1


		  
Query: 38  SGGLAPSKSTVYVSNIDFNLTNSDLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVAR 97
           SGGLAPSKSTVYVSN+ F+LTN+DL+ IFS +GKV +VTI+KD  TRRS+GVAF+LF+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDK 61

Query: 98  DDAVSAARQMNGKILNGRTLSASIASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECP 157
           D A +  R +N K L GR + ASIA DNGRAAEFIRRR Y DKS+CYECGE GHLSY CP
Sbjct: 62  DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121

Query: 158 KNQLGPRERPVPKKGRREKEQRRKEDEEEEAREGDEE-----------EVAFEEDNWASV 217
           KN LG RE P  K+ +++K+    E+E EE  E ++E            +AF++   A +
Sbjct: 122 KNMLGEREPPKKKEKKKKKKIPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQ---AKI 181

Query: 218 VDNAADQRLLMGHEEQQKLGKEKKVKKASYFSDESGEED 246
            +     +   G        +  ++KK++YFSDE    D
Sbjct: 182 EEEQKKWKPSSGGPSTSDDSRRPRIKKSTYFSDEEELSD 217

[Close]

BLAST of Spo12232.1 vs. ExPASy Swiss-Prot
Match: ZCRB1_RAT (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 3.100e-45
Identity = 110/219 (50.23%), Postives = 144/219 (65.75%), Query Frame = 1


		  
Query: 38  SGGLAPSKSTVYVSNIDFNLTNSDLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVAR 97
           SGGLAPSKSTVYVSN+ F+LTN+DL+ IFS +GKV +VTI+KD  TR+S+GVAF+LF+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 98  DDAVSAARQMNGKILNGRTLSASIASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECP 157
           D A++  R +N K L GR + ASIA DNGRAAEFIRRR Y DKS+CYECGE GHLSY CP
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121

Query: 158 KNQLGPRERPVPKKGRREKEQRRKEDEEEEAREGDEE-----------EVAFEEDNWASV 217
           KN LG RE P  K+ +++K+    E+E EE    +EE            +AF++   A +
Sbjct: 122 KNMLGEREPPKKKEKKKKKKVPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQ---AKI 181

Query: 218 VDNAADQRLLMGHEEQQKLGKEKKVKKASYFSDESGEED 246
            +     R   G        +  ++KK++YFSDE    D
Sbjct: 182 EEEQNKWRPSTGGPSTSDDSRRPRIKKSAYFSDEEELSD 217

[Close]

BLAST of Spo12232.1 vs. ExPASy Swiss-Prot
Match: ZCRB1_HUMAN (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens GN=ZCRB1 PE=1 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 4.100e-45
Identity = 109/219 (49.77%), Postives = 144/219 (65.75%), Query Frame = 1


		  
Query: 38  SGGLAPSKSTVYVSNIDFNLTNSDLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVAR 97
           SGGLAPSKSTVYVSN+ F+LTN+DL+ IFS +GKV +VTI+KD  TR+S+GVAF+LF+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 98  DDAVSAARQMNGKILNGRTLSASIASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECP 157
           D A +  R +N K L GR + ASIA DNGRAAEFIRRR Y DKS+CYECGE GHLSY CP
Sbjct: 62  DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121

Query: 158 KNQLGPRERPVPKKGRREKEQRRKEDEEEEAREGDEE-----------EVAFEEDNWASV 217
           KN LG RE P  K+ +++K+    E+E EE  E ++E            +AF++   A +
Sbjct: 122 KNMLGEREPPKKKEKKKKKKAPEPEEEIEEVEESEDEGEDPALDSLSQAIAFQQ---AKI 181

Query: 218 VDNAADQRLLMGHEEQQKLGKEKKVKKASYFSDESGEED 246
            +     +   G        +  ++KK++YFSDE    D
Sbjct: 182 EEEQKKWKPSSGVPSTSDDSRRPRIKKSTYFSDEEELSD 217

[Close]

BLAST of Spo12232.1 vs. ExPASy Swiss-Prot
Match: ZCRB1_MOUSE (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus GN=Zcrb1 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 5.300e-45
Identity = 109/219 (49.77%), Postives = 145/219 (66.21%), Query Frame = 1


		  
Query: 38  SGGLAPSKSTVYVSNIDFNLTNSDLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVAR 97
           SGGLAPSKSTVYVSN+ F+LTN+DL+ IFS +GKV +VTI+KD  TR+S+GVAF+LF+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 98  DDAVSAARQMNGKILNGRTLSASIASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECP 157
           D A++  R +N K L GR + ASIA DNGRAAEFIRRR Y DKS+CYECGE GHLSY CP
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGESGHLSYACP 121

Query: 158 KNQLGPRERPVPKKGRREKEQRRKEDEEEEAREGDEE-----------EVAFEEDNWASV 217
           KN LG RE P  K+ +++++    E+E EE    +EE            +AF++   A +
Sbjct: 122 KNMLGEREPPKKKEKKKKRKLPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQ---AKI 181

Query: 218 VDNAADQRLLMGHEEQQKLGKEKKVKKASYFSDESGEED 246
            +  +  R   G        +  ++KK++YFSDE    D
Sbjct: 182 EEEQSKWRPNPGGPSTSDDSRRPRIKKSAYFSDEEELSD 217

[Close]

BLAST of Spo12232.1 vs. TAIR (Arabidopsis)
Match: AT3G10400.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein)

HSP 1 Score: 266.2 bits (679), Expect = 2.100e-71
Identity = 158/254 (62.20%), Postives = 194/254 (76.38%), Query Frame = 1


		  
Query: 3   DSDEDDTFYYRYTT----PTSGHSATSSSTTTTTKRSSGSGGLAPSKSTVYVSNIDFNLT 62
           D +EDDTFYYRY++    P S      SS+  ++    GSGGLAPSKST+YVSN+DF+LT
Sbjct: 10  DDEEDDTFYYRYSSVAAPPPSNPKHQPSSSAKSSAPGGGSGGLAPSKSTLYVSNLDFSLT 69

Query: 63  NSDLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQMNGKILNGRTLS 122
           NSD+ T+FSTFGKVARVT+LKD  TR+SRGVAFVL+V+R+DA  AAR M+ KILNGR L+
Sbjct: 70  NSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLT 129

Query: 123 ASIASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECPKNQLGPRERPVP--KKGRREK 182
            SIA+DNGRA+EFI++RVYKDKSRCYECG+EGHLSYECPKNQLGPRERP P  K+GRR++
Sbjct: 130 VSIAADNGRASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRERPPPPKKRGRRKE 189

Query: 183 EQRRKEDEEEEAREGD----EEEVAFEEDNWASVVDNAADQRLLMGH-EEQQKLGKEKKV 242
           E+   E+    A        EEE  FEE+NWASVVDN A +RL     EE+++   ++K 
Sbjct: 190 EEGEAEEISWSAAAPSLAVAEEE--FEEENWASVVDNEAGERLRKREAEEEEERRMKRKE 249

Query: 243 KKASYFSDESGEED 246
           KK SYFSDES +ED
Sbjct: 250 KKVSYFSDESDDED 261

[Close]

BLAST of Spo12232.1 vs. TAIR (Arabidopsis)
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4)

HSP 1 Score: 61.2 bits (147), Expect = 1.000e-9
Identity = 32/90 (35.56%), Postives = 51/90 (56.67%), Query Frame = 1


		  
Query: 39  GGLAPSKSTVYVSNIDFNLTNSDLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARD 98
           G L    S ++V  + +   +S L   F++FG+V   T++ D  T RSRG  FV F   D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 99  DAVSAARQMNGKILNGRTLSASIASDNGRA 129
            A +A ++M+GK LNGR +  ++A++   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]

BLAST of Spo12232.1 vs. TAIR (Arabidopsis)
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 60.5 bits (145), Expect = 1.700e-9
Identity = 32/85 (37.65%), Postives = 49/85 (57.65%), Query Frame = 1


		  
Query: 43  PSKSTVYVSNIDFNLTNSDLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVS 102
           P  S + V N+ F+ +   L   FS FG++A V ++KD A +RS+G AF+ F ++DDA  
Sbjct: 37  PLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFL 96

Query: 103 AARQMNGKILNGRTLSASIASDNGR 128
           A   M+ ++ NGR +   IA    R
Sbjct: 97  AIETMDRRMYNGRMIYIDIAKPGKR 121

[Close]

BLAST of Spo12232.1 vs. TAIR (Arabidopsis)
Match: AT5G64200.1 (ortholog of human splicing factor SC35)

HSP 1 Score: 56.6 bits (135), Expect = 2.500e-8
Identity = 39/144 (27.08%), Postives = 71/144 (49.31%), Query Frame = 1


		  
Query: 47  TVYVSNIDFNLTNSDLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQ 106
           ++ V NI F  T  DL+ +F+ +GKV  V I +D  T  SRG AFV +  +D+A  A  +
Sbjct: 17  SLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVER 76

Query: 107 MNGKILNGRTLSASIASDNGRAAEFIRRRVYKDKSRCYECGEEGHLSYECPKNQLGPRER 166
           ++G++++GR ++   A     A +  + RV +   +              P+    P  R
Sbjct: 77  LDGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRRSRSPPRR 136

Query: 167 PVPKKGRREKEQRRKEDEEEEARE 191
             P++ R  + + R +  E++ R+
Sbjct: 137 RSPRRSRSPRRRSRDDYREKDYRK 160

[Close]

BLAST of Spo12232.1 vs. TAIR (Arabidopsis)
Match: AT3G47120.1 (RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 56.6 bits (135), Expect = 2.500e-8
Identity = 25/70 (35.71%), Postives = 43/70 (61.43%), Query Frame = 1


		  
Query: 48  VYVSNIDFNLTNSDLFTIFSTFGKVARVTILKDHATRRSRGVAFVLFVARDDAVSAARQM 107
           VYV  I F+LT  DL  +FS +G++  V +++D  T +S+G AF+ +  +   + A   +
Sbjct: 38  VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97

Query: 108 NGKILNGRTL 118
           NG ++ GRT+
Sbjct: 98  NGALVLGRTI 107

The following BLAST results are available for this feature:

BLAST of Spo12232.1 vs. NCBI nr
BLAST of Spo12232.1 vs. UniProtKB/TrEMBL
BLAST of Spo12232.1 vs. ExPASy Swiss-Prot
BLAST of Spo12232.1 vs. TAIR (Arabidopsis)

BLAST of Spo12232.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902189922\|gb\|KNA11500.1\|	5.2e-125	100.	hypothetical protein SOVF_1346...	[more]
gi\|731335890\|ref\|XP_010678964.1\|	2.1e-89	78.9	PREDICTED: U11/U12 small nucle...	[more]
gi\|225448910\|ref\|XP_002265627.1\|	4.8e-78	69.1	PREDICTED: U11/U12 small nucle...	[more]
gi\|659113349\|ref\|XP_008456528.1\|	2.1e-73	64.5	PREDICTED: zinc finger CCHC-ty...	[more]
gi\|823229932\|ref\|XP_012447703.1\|	2.3e-72	64.6	PREDICTED: U11/U12 small nucle...	[more]

BLAST of Spo12232.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QW68_SPIOL	3.6e-125	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C930_BETVU	1.4e-89	78.9	Uncharacterized protein OS=Bet...	[more]
A5AKR9_VITVI	3.3e-78	69.1	Putative uncharacterized prote...	[more]
A0A0D2TUZ0_GOSRA	1.6e-72	64.6	Uncharacterized protein OS=Gos...	[more]
A0A067KDZ5_JATCU	2.1e-72	65.8	Uncharacterized protein OS=Jat...	[more]

BLAST of Spo12232.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
U1131_ARATH	3.6e-70	62.2	U11/U12 small nuclear ribonucl...	[more]
ZCRB1_BOVIN	2.4e-45	50.2	Zinc finger CCHC-type and RNA-...	[more]
ZCRB1_RAT	3.1e-45	50.2	Zinc finger CCHC-type and RNA-...	[more]
ZCRB1_HUMAN	4.1e-45	49.7	Zinc finger CCHC-type and RNA-...	[more]
ZCRB1_MOUSE	5.3e-45	49.7	Zinc finger CCHC-type and RNA-...	[more]

BLAST of Spo12232.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G10400.1	2.1e-71	62.2	RNA recognition motif and CCHC...	[more]
AT3G23830.1	1.0e-9	35.5	glycine-rich RNA-binding prote...	[more]
AT4G20030.1	1.7e-9	37.6	RNA-binding (RRM/RBD/RNP motif...	[more]
AT5G64200.1	2.5e-8	27.0	ortholog of human splicing fac...	[more]
AT3G47120.1	2.5e-8	35.7	RNA recognition motif (RRM)-co...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 48..117 score: 2.7
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 47..120 score: 2.1
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 46..124 score: 18
IPR001878	Zinc finger, CCHC-type	GENE3D	4.10.60.10		coord: 138..160 score: 6.
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 142..158 score: 2.
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 142..158 score: 2.
IPR001878	Zinc finger, CCHC-type	PROFILE	PS50158	ZF_CCHC	coord: 142..158 score: 10
IPR001878	Zinc finger, CCHC-type	unknown	SSF57756	Retrovirus zinc finger-like domains	coord: 132..159 score: 2.7
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 33..127 score: 5.5
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 43..134 score: 6.58
None	No IPR available	unknown	Coil	Coil	coord: 174..194 scor
None	No IPR available	PANTHER	PTHR23139	RNA-BINDING PROTEIN	coord: 35..193 score: 1.1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0051302	regulation of cell division
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0008270	zinc ion binding