Spo12289.1 (mRNA) | SpinachBase

Overview


Name	Spo12289.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	DIS3-exonuclease-like protein
Location	SpoScf_01550 : 114233 .. 114448 (+)
Sequence length	216

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCTGCAATTTTTCTTTGCGGTTGCGTTCTCGGCGGTACCGCTGACGCTATACGTTCCGCCGATGAGGCACTTGACTCTGTTTGTGGCGGCAATTGAAGAGCTTATGAGGGAGACTAGCGATTACCGAAGAAGAGTTGTTCCTCGCTTCCGTCGCGCCTTCCGATTCTTGCTCCGTGCCGCTTCCTCCTCCACCTCTACCTCCGCCAATTAG

mRNA sequence

ATGGTGCTGCAATTTTTCTTTGCGGTTGCGTTCTCGGCGGTACCGCTGACGCTATACGTTCCGCCGATGAGGCACTTGACTCTGTTTGTGGCGGCAATTGAAGAGCTTATGAGGGAGACTAGCGATTACCGAAGAAGAGTTGTTCCTCGCTTCCGTCGCGCCTTCCGATTCTTGCTCCGTGCCGCTTCCTCCTCCACCTCTACCTCCGCCAATTAG

Coding sequence (CDS)

ATGGTGCTGCAATTTTTCTTTGCGGTTGCGTTCTCGGCGGTACCGCTGACGCTATACGTTCCGCCGATGAGGCACTTGACTCTGTTTGTGGCGGCAATTGAAGAGCTTATGAGGGAGACTAGCGATTACCGAAGAAGAGTTGTTCCTCGCTTCCGTCGCGCCTTCCGATTCTTGCTCCGTGCCGCTTCCTCCTCCACCTCTACCTCCGCCAATTAG

Protein sequence

MVLQFFFAVAFSAVPLTLYVPPMRHLTLFVAAIEELMRETSDYRRRVVPRFRRAFRFLLRAASSSTSTSAN

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo12289	Spo12289	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo12289.1	Spo12289.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12289.1.exon.1	Spo12289.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12289.1.CDS.1	Spo12289.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo12289.1 vs. NCBI nr
Match: gi|902230957|gb|KNA22056.1| (hypothetical protein SOVF_037480 [Spinacia oleracea])

HSP 1 Score: 132.1 bits (331), Expect = 3.800e-28
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


		  
Query: 1  MVLQFFFAVAFSAVPLTLYVPPMRHLTLFVAAIEELMRETSDYRRRVVPRFRRAFRFLLR 60
          MVLQFFFAVAFSAVPLTLYVPPMRHLTLFVAAIEELMRETSDYRRRVVPRFRRAFRFLLR
Sbjct: 1  MVLQFFFAVAFSAVPLTLYVPPMRHLTLFVAAIEELMRETSDYRRRVVPRFRRAFRFLLR 60

Query: 61 AASSSTSTSAN 72
          AASSSTSTSAN
Sbjct: 61 AASSSTSTSAN 71

[Close]

BLAST of Spo12289.1 vs. NCBI nr
Match: gi|870867969|gb|KMT18838.1| (hypothetical protein BVRB_2g029430 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 102.1 bits (253), Expect = 4.200e-19
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 1


		  
Query: 1  MVLQFFFAVAFSAVPLTLYVPPMRHLTLFVAAIEELMRETSDYRRRVVPRFRRAFRFLLR 60
          MV+QFFFAVAFSAVPLTLYVPP+RHLTLFV AI+EL+ ET+ YRRRV PRFRRAFRFLL 
Sbjct: 1  MVVQFFFAVAFSAVPLTLYVPPIRHLTLFVTAIQELITETTGYRRRVFPRFRRAFRFLLH 60

Query: 61 AASSS 66
           ASS+
Sbjct: 61 PASST 65

[Close]

BLAST of Spo12289.1 vs. NCBI nr
Match: gi|629085464|gb|KCW51821.1| (hypothetical protein EUGRSUZ_J01270 [Eucalyptus grandis])

HSP 1 Score: 68.6 bits (166), Expect = 5.200e-9
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1


		  
Query: 1  MVLQFFFAVAFSAVPLTLYVPPMRHLTLFVAAIEELMRETSDYRRRVVPRFRRAFRFLLR 60
          MVLQ FF VAFSAVPLTLYVPP+R L LFV  +E+L+RE+  Y  RV PR R A+  ++ 
Sbjct: 1  MVLQLFFTVAFSAVPLTLYVPPIRSLNLFVETMEDLLRESRTYTHRVYPRVRHAWVRMVD 60

Query: 61 AASSSTS 68
              ST+
Sbjct: 61 CLLCSTA 67

[Close]

BLAST of Spo12289.1 vs. NCBI nr
Match: gi|870864303|gb|KMT15423.1| (hypothetical protein BVRB_3g061280 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 68.6 bits (166), Expect = 5.200e-9
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1


		  
Query: 2  VLQFFFAVAFSAVPLTLYVPPMRHLTLFVAAIEELMRETSDYRRRVVPRFRRAFRFLL 60
          +LQ FFAVAFSAVPLTLY+PP+R L LFV  +E+ +R+T  Y  R  PR  RAF  LL
Sbjct: 1  MLQIFFAVAFSAVPLTLYIPPIRSLNLFVDTVEDAVRQTGSYAVRAYPRLHRAFHRLL 58

[Close]

BLAST of Spo12289.1 vs. NCBI nr
Match: gi|702477900|ref|XP_010032424.1| (PREDICTED: uncharacterized protein LOC104421944 [Eucalyptus grandis])

HSP 1 Score: 68.6 bits (166), Expect = 5.200e-9
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1


		  
Query: 1   MVLQFFFAVAFSAVPLTLYVPPMRHLTLFVAAIEELMRETSDYRRRVVPRFRRAFRFLLR 60
           MVLQ FF VAFSAVPLTLYVPP+R L LFV  +E+L+RE+  Y  RV PR R A+  ++ 
Sbjct: 75  MVLQLFFTVAFSAVPLTLYVPPIRSLNLFVETMEDLLRESRTYTHRVYPRVRHAWVRMVD 134

Query: 61  AASSSTS 68
               ST+
Sbjct: 135 CLLCSTA 141

[Close]

BLAST of Spo12289.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RR91_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_037480 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.700e-28
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


		  
Query: 1  MVLQFFFAVAFSAVPLTLYVPPMRHLTLFVAAIEELMRETSDYRRRVVPRFRRAFRFLLR 60
          MVLQFFFAVAFSAVPLTLYVPPMRHLTLFVAAIEELMRETSDYRRRVVPRFRRAFRFLLR
Sbjct: 1  MVLQFFFAVAFSAVPLTLYVPPMRHLTLFVAAIEELMRETSDYRRRVVPRFRRAFRFLLR 60

Query: 61 AASSSTSTSAN 72
          AASSSTSTSAN
Sbjct: 61 AASSSTSTSAN 71

[Close]

BLAST of Spo12289.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D3T3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g029430 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.900e-19
Identity = 53/65 (81.54%), Postives = 59/65 (90.77%), Query Frame = 1


		  
Query: 1  MVLQFFFAVAFSAVPLTLYVPPMRHLTLFVAAIEELMRETSDYRRRVVPRFRRAFRFLLR 60
          MV+QFFFAVAFSAVPLTLYVPP+RHLTLFV AI+EL+ ET+ YRRRV PRFRRAFRFLL 
Sbjct: 1  MVVQFFFAVAFSAVPLTLYVPPIRHLTLFVTAIQELITETTGYRRRVFPRFRRAFRFLLH 60

Query: 61 AASSS 66
           ASS+
Sbjct: 61 PASST 65

[Close]

BLAST of Spo12289.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CTX6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g061280 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.600e-9
Identity = 35/58 (60.34%), Postives = 42/58 (72.41%), Query Frame = 1


		  
Query: 2  VLQFFFAVAFSAVPLTLYVPPMRHLTLFVAAIEELMRETSDYRRRVVPRFRRAFRFLL 60
          +LQ FFAVAFSAVPLTLY+PP+R L LFV  +E+ +R+T  Y  R  PR  RAF  LL
Sbjct: 1  MLQIFFAVAFSAVPLTLYIPPIRSLNLFVDTVEDAVRQTGSYAVRAYPRLHRAFHRLL 58

[Close]

BLAST of Spo12289.1 vs. UniProtKB/TrEMBL
Match: A0A059ADU6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01270 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 3.600e-9
Identity = 38/67 (56.72%), Postives = 47/67 (70.15%), Query Frame = 1


		  
Query: 1  MVLQFFFAVAFSAVPLTLYVPPMRHLTLFVAAIEELMRETSDYRRRVVPRFRRAFRFLLR 60
          MVLQ FF VAFSAVPLTLYVPP+R L LFV  +E+L+RE+  Y  RV PR R A+  ++ 
Sbjct: 1  MVLQLFFTVAFSAVPLTLYVPPIRSLNLFVETMEDLLRESRTYTHRVYPRVRHAWVRMVD 60

Query: 61 AASSSTS 68
              ST+
Sbjct: 61 CLLCSTA 67

[Close]

BLAST of Spo12289.1 vs. UniProtKB/TrEMBL
Match: W9QPR0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000744 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.100e-9
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1


		  
Query: 2  VLQFFFAVAFSAVPLTLYVPPMRHLTLFVAAIEELMRETSDYRRRVVPRFRRAF 56
          +LQ FFAVAFSAVPLTLYVPP+R L LFV  +E+L R+T+ Y  R  PR R AF
Sbjct: 1  MLQLFFAVAFSAVPLTLYVPPIRSLNLFVETVEDLFRQTAVYTLRAYPRIRLAF 54

[Close]

BLAST of Spo12289.1 vs. TAIR (Arabidopsis)
Match: AT3G52105.1 (unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 9.400e-9
Identity = 33/65 (50.77%), Postives = 43/65 (66.15%), Query Frame = 1


		  
Query: 2  VLQFFFAVAFSAVPLTLYVPPMRHLTLFVAAIEELMRETSDYRRRVVPRFRRAFRFLLRA 61
          +LQ FF +AFSA PLTLY+PP+R LT+FV  +EE+  E   Y  R+ PR R A+  LL  
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60

Query: 62 ASSST 67
            SS+
Sbjct: 61 FFSSS 65

The following BLAST results are available for this feature:

BLAST of Spo12289.1 vs. NCBI nr
BLAST of Spo12289.1 vs. UniProtKB/TrEMBL
BLAST of Spo12289.1 vs. ExPASy Swiss-Prot
BLAST of Spo12289.1 vs. TAIR (Arabidopsis)

BLAST of Spo12289.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902230957\|gb\|KNA22056.1\|	3.8e-28	100.	hypothetical protein SOVF_0374...	[more]
gi\|870867969\|gb\|KMT18838.1\|	4.2e-19	81.5	hypothetical protein BVRB_2g02...	[more]
gi\|629085464\|gb\|KCW51821.1\|	5.2e-9	56.7	hypothetical protein EUGRSUZ_J...	[more]
gi\|870864303\|gb\|KMT15423.1\|	5.2e-9	60.3	hypothetical protein BVRB_3g06...	[more]
gi\|702477900\|ref\|XP_010032424.1\|	5.2e-9	56.7	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo12289.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RR91_SPIOL	2.7e-28	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8D3T3_BETVU	2.9e-19	81.5	Uncharacterized protein OS=Bet...	[more]
A0A0J8CTX6_BETVU	3.6e-9	60.3	Uncharacterized protein OS=Bet...	[more]
A0A059ADU6_EUCGR	3.6e-9	56.7	Uncharacterized protein OS=Euc...	[more]
W9QPR0_9ROSA	6.1e-9	64.8	Uncharacterized protein OS=Mor...	[more]

BLAST of Spo12289.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo12289.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G52105.1	9.4e-9	50.7	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36616	FAMILY NOT NAMED	coord: 3..58 score: 5.8
None	No IPR available	PANTHER	PTHR36616:SF1	SUBFAMILY NOT NAMED	coord: 3..58 score: 5.8

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
cellular_component	GO:0000785	chromatin
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding