Spo12311.1 (mRNA) | SpinachBase

Overview


Name	Spo12311.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	30S ribosomal protein S11, chloroplastic
Location	chr2 : 36666576 .. 36669722 (-)
Sequence length	1306

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAAGTTACCCGAATGTAGGATATGTTGACCCGAAACGAGTACTTTGTAGGACGAAAGTAAGCCCATAACAAGCTTAACAAGCCCATAAGTAAAAACCCCAATATCACAAACCCTAGCTATTTATTCATTCTAATCTCCTTCGTCTTCAGAATCCCTAGCGTTTTTTTCGTCAGTGTTCACCAAAACCCTACTCCCCTTCTCTCTCTCTCCGTTGTCGCCTGCAACAATGGTAAGCGTTGTCTATCTCTCTTCAATGTTTGCAATCGCCGATTTTTTCTCTCCTGTTTCTGACATTTGAAGATCTAATTGTTTGATTCGATTTGTTTTGTGTCGTTTGTTTGCGACGGTGTTGACGGAAATAGTCGAGGAATAGAAAGACCAGAGAGCCTAAGGAAGAGACTGTTACTCTCGGCCCAGCTGTTAGAGAGGGAGAGCATGTTTTTGGCGTTGCTCACATTTTCGCCTCTTTCAATGATACCTTCATCGTAAGTTGTTTATCAAATTTGTCATCTTTTCTTTTAATTTGGTTTAATTTTTGCTGGTTTAGATGTTTCATCCTCTCTAGAATCGATTTCATTAATTTATTTGCTATTTATTGTAATTTCAGCATGTCACTGATGTGTCCGGGAGAGAAACCCTTGTTCGTATTACAGGTGAAAACACTTTTTTTCATTGTTGATTTTTAGGTTGTTTTTGTGTGATACTATTTTCATGGTTTTATTGTGTTTTTGATGATGTGATGATGTATTGTTACTTATAATTGAGAGAATACAGCTTGCAAGTGATTTGGGTGTTTTTGATTGATCCGATTTGACGCTTTACTCTTCATGTGAATTGAAATTTCCTCAATCATCGTTTATTATGGATTGATGTTGATATCAGATAATGTCATCATTTTCCTATAATTTGCTGAACATTAGTAACTAAATTTTGCAGAAATAGCACTAATAATCAATTGAATCACATTGCGCCGTTCATAGAATTATGCTGTTTTATTTTACTTGGTTGTCTGTTTTTAGTTAATGTTTAGAGCCTCTGGTATTTTTTTAACTCTGTTATTTTTCCTATCAGAAATGGTTGTAGCTGTAAGAGCTGTCCATAAATTCCTTGTAACATGCTTTTGATATCTTGAAACGTTAATTTGCAGTGTCTAGCAATTTCATTCTATTTACTTCCCTGTAATATAGAATCGAACTCTGCTTATTTTACAACAAAAGACAAGTTTTTGCCGTTAGAAACGTTAATTTGCAGTGTCTAGCAATTTCAGTCTATTTACTTCCCTGTAATATATACTGCTTATTACTATTGAATGAATCGAACTCTGCTCATTTTACAACGAAAGACAAGTTTTTTGCCGTTTCTGACCTCACATGTATTTCACCCGTTAGTAGACCGTGACTTTCTTATGTTATTTTCTTGATGAGCGATGTGTGGAGTGTACAAATTCATTGAATTTTGAAACTGTTTGGGTCTATTTTATTGTCACATACTCCTTCGATGTTCAATAGTTCGCTTCATCTGAATTGTGTGCTTTGGTTGGATTAGGTGGGATGAAGGTCAAAGCTGACAGGGATGAGTCTTCTCCTTATGCTGCTATGCTTGCTGCCCAAGATGTTTCTACACGTTGTAAGGTAAATATCCAATCTACTTTGTTAACCTTTGGGACAAATTATCTGATTGTTTATTAATAGTTCTATTTTGTGGTCTAAATTACAGGAACTTGGCATCACTGCTCTCCATATCAAGCTCCGTGCTACTGGAGGAAACAAGACTAAGACTCCTGGACCAGGTGCTCAGTCTGCACTCAGGGCCCTTGCTCGTTCAGGCATGAAAATTGGCCGTATTGGTATGTTCCTCTTCCTTCAATATTTTCATTCTGTTCACCAAAATCTATTTTCTGTAACTCATAAAAAGTGACTAAATAGTGGATAAAACTCTTGGTATCATATGGATTGTGGAAGAGACATTTGAATGCAGCCTACCCTTACTTATCTCGTGTTGCATAGTACAGTACACTTATACTTCAAACCATGCATAATACTCAGTACACCTCTTTTTCAACTCTTGGAATATTAAATTTTGCTGGCACTATTCATGATGAGAATCAAGCATAAAAGCATGGTAGCTGAAACTGTTAACTAAATTGTATCATTTGTCTTGTGACCTATAATATTGGATCTTTATTTTTTCTGTGATGTCCCATAAATCTGCTTGGTATTGTTTACTTTCAAAGTATTTAGAATTGAAACCTTTAGTAATAGAACCCGTTTTATGACTATTGTGCTTTCATATCTTTGTATATCACTCAACTCCTCATTTATCCAATTTTGTTCAAGTTTATCTATGTTCTTTCTCTGGTAATGAATTTGTTCTTGTAAGGTAATTAGTCCTCGTATGTTTAGAATTTCCTTTCTTTGATAAAGCATGTACTGATATACTTGTTAACTCTTTGCAGAGGATGTAACCCCCATCCCAACAGACAGTACTCGCCGAAAGGGAGGAAGAAGGGGAAGGAGGCTGTGAATTTTCTTGTTCCATCACTTGTCATGTGGTGTTGTTATATTATGGATTTTTTAGTCTAGCAACTGTTGAGACCTTTGCTCTTCTTTTTGAAGTCAGGACTTGTAGTTTGGAATTTCATTAAGATTTATGATGTTCTGTTTAAGAGCAATTTTGATGGGTTTTTTTGAGTTGGATACAAAACGTTTACAGTCAATGATCACGTGATAATGTTGCAACTGGCTCTTAAATTTACTATGCTTACCTTAGTTGAAATGCTATATGCTAATTTGCTTGCCTTACACTCGTCTGTTGCTATTCCACCATTGAATGTTCGAAGATGATTGGTTTGAAGGTAATGGTTCTGCGTTGTTGTTTTCCTTGGCTGAGTTTTGAAAATAACTTTTAGCAGATTGAATAGTTACACTTCTGTGTGTAAGACTCCTTGACCACAGTCTACACAATTAAAGTGTGATGGTGTTTTGTACTTTTCCAAAGACGGGATTTTCATTGTGTTAGTTTTATATGTTATTCTCAATAGTAATGTTAGTAGTTAAATTATTTGAGGGGTTGTTGAGACGGTGAAATTTGCCGTTCCATTAATGAATTGGATAGTATTGTTTGGGCACATTAGGTTGATAATGTA

mRNA sequence

TAAAAGTTACCCGAATGTAGGATATGTTGACCCGAAACGAGTACTTTGTAGGACGAAAGTAAGCCCATAACAAGCTTAACAAGCCCATAAGTAAAAACCCCAATATCACAAACCCTAGCTATTTATTCATTCTAATCTCCTTCGTCTTCAGAATCCCTAGCGTTTTTTTCGTCAGTGTTCACCAAAACCCTACTCCCCTTCTCTCTCTCTCCGTTGTCGCCTGCAACAATGTCGAGGAATAGAAAGACCAGAGAGCCTAAGGAAGAGACTGTTACTCTCGGCCCAGCTGTTAGAGAGGGAGAGCATGTTTTTGGCGTTGCTCACATTTTCGCCTCTTTCAATGATACCTTCATCCATGTCACTGATGTGTCCGGGAGAGAAACCCTTGTTCGTATTACAGGTGGGATGAAGGTCAAAGCTGACAGGGATGAGTCTTCTCCTTATGCTGCTATGCTTGCTGCCCAAGATGTTTCTACACGTTGTAAGGAACTTGGCATCACTGCTCTCCATATCAAGCTCCGTGCTACTGGAGGAAACAAGACTAAGACTCCTGGACCAGGTGCTCAGTCTGCACTCAGGGCCCTTGCTCGTTCAGGCATGAAAATTGGCCGTATTGAGGATGTAACCCCCATCCCAACAGACAGTACTCGCCGAAAGGGAGGAAGAAGGGGAAGGAGGCTGTGAATTTTCTTGTTCCATCACTTGTCATGTGGTGTTGTTATATTATGGATTTTTTAGTCTAGCAACTGTTGAGACCTTTGCTCTTCTTTTTGAAGTCAGGACTTGTAGTTTGGAATTTCATTAAGATTTATGATGTTCTGTTTAAGAGCAATTTTGATGGGTTTTTTTGAGTTGGATACAAAACGTTTACAGTCAATGATCACGTGATAATGTTGCAACTGGCTCTTAAATTTACTATGCTTACCTTAGTTGAAATGCTATATGCTAATTTGCTTGCCTTACACTCGTCTGTTGCTATTCCACCATTGAATGTTCGAAGATGATTGGTTTGAAGGTAATGGTTCTGCGTTGTTGTTTTCCTTGGCTGAGTTTTGAAAATAACTTTTAGCAGATTGAATAGTTACACTTCTGTGTGTAAGACTCCTTGACCACAGTCTACACAATTAAAGTGTGATGGTGTTTTGTACTTTTCCAAAGACGGGATTTTCATTGTGTTAGTTTTATATGTTATTCTCAATAGTAATGTTAGTAGTTAAATTATTTGAGGGGTTGTTGAGACGGTGAAATTTGCCGTTCCATTAATGAATTGGATAGTATTGTTTGGGCACATTAGGTTGATAATGTA

Coding sequence (CDS)

ATGTCGAGGAATAGAAAGACCAGAGAGCCTAAGGAAGAGACTGTTACTCTCGGCCCAGCTGTTAGAGAGGGAGAGCATGTTTTTGGCGTTGCTCACATTTTCGCCTCTTTCAATGATACCTTCATCCATGTCACTGATGTGTCCGGGAGAGAAACCCTTGTTCGTATTACAGGTGGGATGAAGGTCAAAGCTGACAGGGATGAGTCTTCTCCTTATGCTGCTATGCTTGCTGCCCAAGATGTTTCTACACGTTGTAAGGAACTTGGCATCACTGCTCTCCATATCAAGCTCCGTGCTACTGGAGGAAACAAGACTAAGACTCCTGGACCAGGTGCTCAGTCTGCACTCAGGGCCCTTGCTCGTTCAGGCATGAAAATTGGCCGTATTGAGGATGTAACCCCCATCCCAACAGACAGTACTCGCCGAAAGGGAGGAAGAAGGGGAAGGAGGCTGTGA

Protein sequence

MSRNRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo12311	Spo12311	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo12311.1	Spo12311.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12311.1.utr5p.1	Spo12311.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12311.1.CDS.6	Spo12311.1.CDS.6	CDS
Spo12311.1.CDS.5	Spo12311.1.CDS.5	CDS
Spo12311.1.CDS.4	Spo12311.1.CDS.4	CDS
Spo12311.1.CDS.3	Spo12311.1.CDS.3	CDS
Spo12311.1.CDS.2	Spo12311.1.CDS.2	CDS
Spo12311.1.CDS.1	Spo12311.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12311.1.utr3p.1	Spo12311.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12311.1.exon.6	Spo12311.1.exon.6	exon
Spo12311.1.exon.5	Spo12311.1.exon.5	exon
Spo12311.1.exon.4	Spo12311.1.exon.4	exon
Spo12311.1.exon.3	Spo12311.1.exon.3	exon
Spo12311.1.exon.2	Spo12311.1.exon.2	exon
Spo12311.1.exon.1	Spo12311.1.exon.1	exon

Homology

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BLAST of Spo12311.1 vs. NCBI nr
Match: gi|902153040|gb|KNA05662.1| (hypothetical protein SOVF_188230 [Spinacia oleracea])

HSP 1 Score: 296.6 bits (758), Expect = 2.500e-77
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1

		  
Query: 1   MSRNRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGM 60
           MSRNRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGM
Sbjct: 1   MSRNRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGM 60

Query: 61  KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
           KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA
Sbjct: 61  KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120

Query: 121 RSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           RSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 RSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 151

[Close]

BLAST of Spo12311.1 vs. NCBI nr
Match: gi|902168224|gb|KNA07476.1| (hypothetical protein SOVF_171510 [Spinacia oleracea])

HSP 1 Score: 288.5 bits (737), Expect = 6.800e-75
Identity = 149/157 (94.90%), Postives = 151/157 (96.18%), Query Frame = 1

		  
Query: 1   MSRNRKTREPKEET------VTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLV 60
           MSRNRKTREPKEET      +TLGPAVREGEHVFGVAHIFASFNDTFIHVTD+SGRETLV
Sbjct: 1   MSRNRKTREPKEETITLGXTITLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLV 60

Query: 61  RITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQS 120
           RITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQS
Sbjct: 61  RITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQS 120

Query: 121 ALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           ALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 ALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 157

[Close]

BLAST of Spo12311.1 vs. NCBI nr
Match: gi|470114823|ref|XP_004293608.1| (PREDICTED: 40S ribosomal protein S14 isoform X1 [Fragaria vesca subsp. vesca])

HSP 1 Score: 287.0 bits (733), Expect = 2.000e-74
Identity = 144/151 (95.36%), Postives = 150/151 (99.34%), Query Frame = 1

		  
Query: 1   MSRNRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGM 60
           MS+++KTREPKEE VTLGPAVR+GEHVFGVAHIFASFNDTFIHVTD+SGRETLVRITGGM
Sbjct: 1   MSKHKKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60

Query: 61  KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
           KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA
Sbjct: 61  KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120

Query: 121 RSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           RSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 RSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 151

[Close]

BLAST of Spo12311.1 vs. NCBI nr
Match: gi|473881894|gb|EMS47995.1| (40S ribosomal protein S14 [Triticum urartu])

HSP 1 Score: 286.2 bits (731), Expect = 3.400e-74
Identity = 144/151 (95.36%), Postives = 148/151 (98.01%), Query Frame = 1

		  
Query: 1   MSRNRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGM 60
           MS  RKTREPKEE VTLGPAVREGEHVFGVAHIFASFNDTFIHVTD+SGRETLVRITGGM
Sbjct: 1   MSSKRKTREPKEENVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60

Query: 61  KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
           KVKADRDESSPYAAMLA+QDV+TRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA
Sbjct: 61  KVKADRDESSPYAAMLASQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120

Query: 121 RSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           RSGMKIGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 121 RSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 151

[Close]

BLAST of Spo12311.1 vs. NCBI nr
Match: gi|449462944|ref|XP_004149195.1| (PREDICTED: 40S ribosomal protein S14-2 [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 7.500e-74
Identity = 147/151 (97.35%), Postives = 149/151 (98.68%), Query Frame = 1

		  
Query: 1   MSRNRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGM 60
           MSR RKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTD+SGRETLVRITGGM
Sbjct: 1   MSR-RKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60

Query: 61  KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
           KVKADRDESSPYAAMLAAQDVS RCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA
Sbjct: 61  KVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120

Query: 121 RSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           RSGM+IGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 RSGMRIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Spo12311.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEH8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_188230 PE=3 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.700e-77
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1

		  
Query: 1   MSRNRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGM 60
           MSRNRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGM
Sbjct: 1   MSRNRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGM 60

Query: 61  KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
           KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA
Sbjct: 61  KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120

Query: 121 RSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           RSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 RSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 151

[Close]

BLAST of Spo12311.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QLK3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_171510 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 4.700e-75
Identity = 149/157 (94.90%), Postives = 151/157 (96.18%), Query Frame = 1

		  
Query: 1   MSRNRKTREPKEET------VTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLV 60
           MSRNRKTREPKEET      +TLGPAVREGEHVFGVAHIFASFNDTFIHVTD+SGRETLV
Sbjct: 1   MSRNRKTREPKEETITLGXTITLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLV 60

Query: 61  RITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQS 120
           RITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQS
Sbjct: 61  RITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQS 120

Query: 121 ALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           ALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 121 ALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 157

[Close]

BLAST of Spo12311.1 vs. UniProtKB/TrEMBL
Match: M7Z6I6_TRIUA (40S ribosomal protein S14 OS=Triticum urartu GN=TRIUR3_30873 PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.300e-74
Identity = 144/151 (95.36%), Postives = 148/151 (98.01%), Query Frame = 1

		  
Query: 1   MSRNRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGM 60
           MS  RKTREPKEE VTLGPAVREGEHVFGVAHIFASFNDTFIHVTD+SGRETLVRITGGM
Sbjct: 1   MSSKRKTREPKEENVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60

Query: 61  KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
           KVKADRDESSPYAAMLA+QDV+TRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA
Sbjct: 61  KVKADRDESSPYAAMLASQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120

Query: 121 RSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           RSGMKIGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 121 RSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 151

[Close]

BLAST of Spo12311.1 vs. UniProtKB/TrEMBL
Match: M0VIF1_HORVD (Uncharacterized protein OS=Hordeum vulgare var. distichum PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.300e-74
Identity = 144/151 (95.36%), Postives = 148/151 (98.01%), Query Frame = 1

		  
Query: 1   MSRNRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGM 60
           MS  RKTREPKEE VTLGPAVREGEHVFGVAHIFASFNDTFIHVTD+SGRETLVRITGGM
Sbjct: 1   MSSKRKTREPKEENVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60

Query: 61  KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
           KVKADRDESSPYAAMLA+QDV+TRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA
Sbjct: 61  KVKADRDESSPYAAMLASQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120

Query: 121 RSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           RSGMKIGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 121 RSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 151

[Close]

BLAST of Spo12311.1 vs. UniProtKB/TrEMBL
Match: A0A0C4BKF6_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.300e-74
Identity = 144/151 (95.36%), Postives = 148/151 (98.01%), Query Frame = 1

		  
Query: 1   MSRNRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGM 60
           MS  RKTREPKEE VTLGPAVREGEHVFGVAHIFASFNDTFIHVTD+SGRETLVRITGGM
Sbjct: 1   MSSKRKTREPKEENVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60

Query: 61  KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
           KVKADRDESSPYAAMLA+QDV+TRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA
Sbjct: 61  KVKADRDESSPYAAMLASQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120

Query: 121 RSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           RSGMKIGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 121 RSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 151

[Close]

BLAST of Spo12311.1 vs. ExPASy Swiss-Prot
Match: RS142_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 2.800e-73
Identity = 141/151 (93.38%), Postives = 146/151 (96.69%), Query Frame = 1

		  
Query: 1   MSRNRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGM 60
           MS  +KTREPKEE V LGPAVREGEHVFGVAHIFASFNDTFIHVTD+SGRETLVRITGGM
Sbjct: 1   MSGRKKTREPKEENV-LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60

Query: 61  KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
           KVKADRDESSPYAAMLA+QDV+ RCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA
Sbjct: 61  KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120

Query: 121 RSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           RSGMKIGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 121 RSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Spo12311.1 vs. ExPASy Swiss-Prot
Match: RS142_ARATH (40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 1.400e-72
Identity = 137/147 (93.20%), Postives = 143/147 (97.28%), Query Frame = 1

		  
Query: 5   RKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGMKVKA 64
           RKT+EPK ETVTLGP+VREGE VFGV HIFASFNDTFIHVTD+SGRETLVRITGGMKVKA
Sbjct: 4   RKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKA 63

Query: 65  DRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGM 124
           DRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARSGM
Sbjct: 64  DRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGM 123

Query: 125 KIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           KIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 124 KIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Spo12311.1 vs. ExPASy Swiss-Prot
Match: RS143_ARATH (40S ribosomal protein S14-3 OS=Arabidopsis thaliana GN=RPS14C PE=2 SV=2)

HSP 1 Score: 272.3 bits (695), Expect = 3.100e-72
Identity = 136/147 (92.52%), Postives = 142/147 (96.60%), Query Frame = 1

		  
Query: 5   RKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGMKVKA 64
           RKT+EPK E VTLGPAVREGE VFGV H+FASFNDTFIHVTD+SGRETLVRITGGMKVKA
Sbjct: 4   RKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVKA 63

Query: 65  DRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGM 124
           DRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARSGM
Sbjct: 64  DRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSGM 123

Query: 125 KIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           KIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 124 KIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Spo12311.1 vs. ExPASy Swiss-Prot
Match: RS141_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 7.000e-72
Identity = 142/151 (94.04%), Postives = 145/151 (96.03%), Query Frame = 1

		  
Query: 1   MSRNRKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGM 60
           MSR RKTREPKEE V LGP VREGE VFGVAHIFASFNDTFIHVTD+SGRETLVRITGGM
Sbjct: 1   MSR-RKTREPKEENV-LGPTVREGEFVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGM 60

Query: 61  KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120
           KVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA
Sbjct: 61  KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALA 120

Query: 121 RSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           RSGMKIGRIEDVTP+PTDSTRRKGGRRGRRL
Sbjct: 121 RSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 149

[Close]

BLAST of Spo12311.1 vs. ExPASy Swiss-Prot
Match: RS141_ARATH (40S ribosomal protein S14-1 OS=Arabidopsis thaliana GN=RPS14A PE=1 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.200e-71
Identity = 135/147 (91.84%), Postives = 142/147 (96.60%), Query Frame = 1

		  
Query: 5   RKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGMKVKA 64
           RKT+EPK + VTLGP+VREGE VFGV HIFASFNDTFIHVTD+SGRETLVRITGGMKVKA
Sbjct: 4   RKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKA 63

Query: 65  DRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGM 124
           DRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARSGM
Sbjct: 64  DRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGM 123

Query: 125 KIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           KIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 124 KIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Spo12311.1 vs. TAIR (Arabidopsis)
Match: AT3G11510.1 (Ribosomal protein S11 family protein)

HSP 1 Score: 273.5 bits (698), Expect = 7.900e-74
Identity = 137/147 (93.20%), Postives = 143/147 (97.28%), Query Frame = 1

		  
Query: 5   RKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGMKVKA 64
           RKT+EPK ETVTLGP+VREGE VFGV HIFASFNDTFIHVTD+SGRETLVRITGGMKVKA
Sbjct: 4   RKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKA 63

Query: 65  DRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGM 124
           DRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARSGM
Sbjct: 64  DRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGM 123

Query: 125 KIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           KIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 124 KIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Spo12311.1 vs. TAIR (Arabidopsis)
Match: AT3G52580.1 (Ribosomal protein S11 family protein)

HSP 1 Score: 272.3 bits (695), Expect = 1.800e-73
Identity = 136/147 (92.52%), Postives = 142/147 (96.60%), Query Frame = 1

		  
Query: 5   RKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGMKVKA 64
           RKT+EPK E VTLGPAVREGE VFGV H+FASFNDTFIHVTD+SGRETLVRITGGMKVKA
Sbjct: 4   RKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVKA 63

Query: 65  DRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGM 124
           DRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARSGM
Sbjct: 64  DRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSGM 123

Query: 125 KIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           KIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 124 KIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Spo12311.1 vs. TAIR (Arabidopsis)
Match: AT2G36160.1 (Ribosomal protein S11 family protein)

HSP 1 Score: 270.4 bits (690), Expect = 6.700e-73
Identity = 135/147 (91.84%), Postives = 142/147 (96.60%), Query Frame = 1

		  
Query: 5   RKTREPKEETVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDVSGRETLVRITGGMKVKA 64
           RKT+EPK + VTLGP+VREGE VFGV HIFASFNDTFIHVTD+SGRETLVRITGGMKVKA
Sbjct: 4   RKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKA 63

Query: 65  DRDESSPYAAMLAAQDVSTRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGM 124
           DRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRATGGNKTKTPGPGAQSALRALARSGM
Sbjct: 64  DRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGM 123

Query: 125 KIGRIEDVTPIPTDSTRRKGGRRGRRL 152
           KIGRIEDVTPIPTDSTRRKGGRRGRRL
Sbjct: 124 KIGRIEDVTPIPTDSTRRKGGRRGRRL 150

[Close]

BLAST of Spo12311.1 vs. TAIR (Arabidopsis)
Match: ATCG00750.1 (ribosomal protein S11)

HSP 1 Score: 63.2 bits (152), Expect = 1.600e-10
Identity = 41/119 (34.45%), Postives = 60/119 (50.42%), Query Frame = 1

		  
Query: 29  GVAHIFASFNDTFIHVTDVSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKEL 88
           GV H+ ASFN+T + VTDV GR       G    +  R   +P+AA  AA +      + 
Sbjct: 28  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFRGTR-RGTPFAAQTAAGNAIRAVVDQ 87

Query: 89  GITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 148
           G+    +++        K PG G  +ALRA+ RSG+ +  + DVTP+P +  R    RR
Sbjct: 88  GMQRAEVRI--------KGPGLGRDAALRAIRRSGILLSFVRDVTPMPHNGCRPPKKRR 137

The following BLAST results are available for this feature:

BLAST of Spo12311.1 vs. NCBI nr
BLAST of Spo12311.1 vs. UniProtKB/TrEMBL
BLAST of Spo12311.1 vs. ExPASy Swiss-Prot
BLAST of Spo12311.1 vs. TAIR (Arabidopsis)

BLAST of Spo12311.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|902153040\|gb\|KNA05662.1\|	2.5e-77	100.	hypothetical protein SOVF_1882...	[more]
gi\|902168224\|gb\|KNA07476.1\|	6.8e-75	94.9	hypothetical protein SOVF_1715...	[more]
gi\|470114823\|ref\|XP_004293608.1\|	2.0e-74	95.3	PREDICTED: 40S ribosomal prote...	[more]
gi\|473881894\|gb\|EMS47995.1\|	3.4e-74	95.3	40S ribosomal protein S14 [Tri...	[more]
gi\|449462944\|ref\|XP_004149195.1\|	7.5e-74	97.3	PREDICTED: 40S ribosomal prote...	[more]

BLAST of Spo12311.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9QEH8_SPIOL	1.7e-77	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9QLK3_SPIOL	4.7e-75	94.9	Uncharacterized protein OS=Spi...	[more]
M7Z6I6_TRIUA	2.3e-74	95.3	40S ribosomal protein S14 OS=T...	[more]
M0VIF1_HORVD	2.3e-74	95.3	Uncharacterized protein OS=Hor...	[more]
A0A0C4BKF6_WHEAT	2.3e-74	95.3	Uncharacterized protein OS=Tri...	[more]

BLAST of Spo12311.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
RS142_MAIZE	2.8e-73	93.3	40S ribosomal protein S14 OS=Z...	[more]
RS142_ARATH	1.4e-72	93.2	40S ribosomal protein S14-2 OS...	[more]
RS143_ARATH	3.1e-72	92.5	40S ribosomal protein S14-3 OS...	[more]
RS141_MAIZE	7.0e-72	94.0	40S ribosomal protein S14 OS=Z...	[more]
RS141_ARATH	1.2e-71	91.8	40S ribosomal protein S14-1 OS...	[more]

BLAST of Spo12311.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4

Position :

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Match Name	E-value	Identity	Description
AT3G11510.1	7.9e-74	93.2	Ribosomal protein S11 family p...	[more]
AT3G52580.1	1.8e-73	92.5	Ribosomal protein S11 family p...	[more]
AT2G36160.1	6.7e-73	91.8	Ribosomal protein S11 family p...	[more]
ATCG00750.1	1.6e-10	34.4	ribosomal protein S11	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001971	Ribosomal protein S11	GENE3D	3.30.420.80		coord: 18..148 score: 6.1
IPR001971	Ribosomal protein S11	HAMAP	MF_01310	Ribosomal_S11	coord: 3..148 score: 20
IPR001971	Ribosomal protein S11	PIR	PIRSF002131	RPS11p_RPS11a_RPS14e_RPS11o	coord: 1..148 score: 6.1
IPR001971	Ribosomal protein S11	PANTHER	PTHR11759	40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11	coord: 1..151 score: 7.2E
IPR001971	Ribosomal protein S11	PFAM	PF00411	Ribosomal_S11	coord: 29..147 score: 2.0
IPR018102	Ribosomal S11, conserved site	PROSITE	PS00054	RIBOSOMAL_S11	coord: 116..138 scor
None	No IPR available	PANTHER	PTHR11759:SF12	40S RIBOSOMAL PROTEIN S14-1-RELATED	coord: 1..151 score: 7.2E
None	No IPR available	unknown	SSF53137	Translational machinery components	coord: 24..149 score: 5.36

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome