Spo12421.1 (mRNA)

Overview
NameSpo12421.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_04665 : 1 .. 2110 (+)
Sequence length645
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATAGGGTTCTAAACTTTCACTTTCCTTTCTCATAATTCAGTCCATCAACTACCAAAACATTTCACTCCTAAAATCAATTTCAATTCGAAACTCTAAATTCTTAGAACGTGGTCGATGAACATCTGAATATTTCTGCAAAACTAGGGTATCAATTCTTCATAAAACGTTCAGATCTTCGCGATTTTTTGATCAATTTAATGCGATTTTAAGCAATTTAATTTGATTGTTGATGAGATTCTGGGCTATTTAAGCTGTTTGAGTTGATTGCTGATGAGATTTTGTGCGAATTTTTCTGTTATAATATGATTTTGTTGATTTTGGTACAACTTAGGGCTTTTTGTGCTATTTAAGATGTTTGAGTTGGTTGCTGATGTGATTTTGTGCGAATTTTTGTGTTATAATATGATTTTGTTGATTTTGGTCCAATTTGGGGTTTTTTGTGTAATCGATATGATTGATGTAAATATTACTATTTAGTTTTCCAATTATATTGCTGAGATTTTGACGTGTTCATGCTATTATTTGTTGAGTTTCAGAATGTTTTGTGAATATTTCTCATGGCTTGATTTTAAGCTTTGAATTTATGGACAATTTTCTCGACTTTTGATATTAGGTACTCCGTATTTATTTCTATAACGATACCAGGGATACTGGATCATGAAGCCAGAGGCCGATTCCTAATATGACAATCAGTTGCGAGCTGCAAATTCAGTTCGAGTATGCTTAAGAAACTCAATGGTTTGTGTTAGACCAACACTTTGTTAGTCACATTCTCCTAATTACTATTTTTTTGCCAAGAGGTTTATTTTCATTCTTTCTTTTATTCTTCTGGCGCTATTTAGAATTTGAAATCATGGTTTATCATCTTGAATTCTTGACATTGATTACACTAAACCTAGAACATCTTGACATTTGTGTATTTTCAGTTGTTCTTGACTTCTTGGGAATCTTAGCCCTAATTTTTCCGCCGGTGAAAAGTGGAAGCCCTTGAAGCAACCTAAGAAGGATAGACTGAGTTAGATGAGGTATAAAATTCTCCATAAGCATATCTTTTTTTTTTGTTAAATTTTGATTTAGGGTAATGAAAAATGAATTGGAGTTGGATTTTACTATTCATATAATATTCAAATTCAGAACCTTGCTCAGATATGCCTTCCTATTGGAATGGATGTTAGTAGAATATTGTATTGATTAGGTAATGAGTAGAACACACATTTTTTTGGTATATGAACTTTGCTCTGATATGACTGCCTATTTTTCTTTTGCCTCGTTGTTTTTAAAAATGTATGTTTTAACTTAATCATTTGATTCTATTTATTTAGTGAGAGAATAGGGGTGCATTTAGTTTCTGTTATGTTTTATACAAGAAGTTGTTATATGCTTTAGCCTTTTAGGTATTTGTTCCCAAGTTTCTATTTGTCTTATGCTTGCGGTCCAAGAAACTATCACGGGTTCTGCTTTCAATTTGGGAAATTATTGTTACAATTTTTTGCGCTTAGATACATGAATTTGTGTTTTTGATGGTAATGTATCGAAAATGACTTTTAAATAAAGTGCTACTTGCTGCTATATATGATATATAGGCTTTTAGCATGGTTGACAACTTGACGTGGATATCAATGGAGTATTAATTGGTGTCCTAGAGTGTAGCATTGAATATCTCTTCGTTGAAGTACGCTTTGTTATTTCTCTTAGAGATTGATGTTGTAATTTTGTCTAAAAGTCTTATCATATCTTGGTTGCCTCAGCTATTTTGTTTTACCTTTGCTATCCTGATTTCATTCTTTGTTGTATTCTTGTATGGTCATAGGTATTGTGGCATCTGACGCCGTAGACATCTTACCTCAGTCTGGCAGCCCTTGGAATTGCAAGCATTCAAGGACTGGTTGTTGCTTAAGAGAGATGATGTTGATCGTCATTTGTTATGTATAATACAGGAGAAAGGTAGACATCCACACAATAATGATCTATCTGCTCCATCTCCTCCAAGCAGAAATATGTATGGAACAGGTCAAGGATCAAGCCGTTGCTTGTATGGTTGTTACCTGTCTACAATAAAAGTTGAGCAAGAAGATAAAGCAACTAGATCTTTTGAAAAGGACTTATAG

mRNA sequence

CCATAGGGTTCTAAACTTTCACTTTCCTTTCTCATAATTCAGTCCATCAACTACCAAAACATTTCACTCCTAAAATCAATTTCAATTCGAAACTCTAAATTCTTAGAACGTGGTCGATGAACATCTGAATATTTCTGCAAAACTAGGGTACTCCGTATTTATTTCTATAACGATACCAGGGATACTGGATCATGAAGCCAGAGGCCGATTCCTAATATGACAATCAGTTGCGAGCTGCAAATTCAGTTCGAGTATGCTTAAGAAACTCAATGTTGTTCTTGACTTCTTGGGAATCTTAGCCCTAATTTTTCCGCCGGTGAAAAGTGGAAGCCCTTGAAGCAACCTAAGAAGGATAGACTGAGTTAGATGAGACATCTTACCTCAGTCTGGCAGCCCTTGGAATTGCAAGCATTCAAGGACTGGTTGTTGCTTAAGAGAGATGATGTTGATCGTCATTTGTTATGTATAATACAGGAGAAAGGTAGACATCCACACAATAATGATCTATCTGCTCCATCTCCTCCAAGCAGAAATATGTATGGAACAGGTCAAGGATCAAGCCGTTGCTTGTATGGTTGTTACCTGTCTACAATAAAAGTTGAGCAAGAAGATAAAGCAACTAGATCTTTTGAAAAGGACTTATAG

Coding sequence (CDS)

ATGAGACATCTTACCTCAGTCTGGCAGCCCTTGGAATTGCAAGCATTCAAGGACTGGTTGTTGCTTAAGAGAGATGATGTTGATCGTCATTTGTTATGTATAATACAGGAGAAAGGTAGACATCCACACAATAATGATCTATCTGCTCCATCTCCTCCAAGCAGAAATATGTATGGAACAGGTCAAGGATCAAGCCGTTGCTTGTATGGTTGTTACCTGTCTACAATAAAAGTTGAGCAAGAAGATAAAGCAACTAGATCTTTTGAAAAGGACTTATAG

Protein sequence

MRHLTSVWQPLELQAFKDWLLLKRDDVDRHLLCIIQEKGRHPHNNDLSAPSPPSRNMYGTGQGSSRCLYGCYLSTIKVEQEDKATRSFEKDL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo12421Spo12421gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo12421.1Spo12421.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12421.1.exon.1Spo12421.1.exon.1exon
Spo12421.1.exon.2Spo12421.1.exon.2exon
Spo12421.1.exon.3Spo12421.1.exon.3exon
Spo12421.1.exon.4Spo12421.1.exon.4exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12421.1.utr5p.1Spo12421.1.utr5p.1five_prime_UTR
Spo12421.1.utr5p.2Spo12421.1.utr5p.2five_prime_UTR
Spo12421.1.utr5p.3Spo12421.1.utr5p.3five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12421.1.CDS.1Spo12421.1.CDS.1CDS
Spo12421.1.CDS.2Spo12421.1.CDS.2CDS


Homology
[Close]
BLAST of Spo12421.1 vs. NCBI nr
Match: gi|902229171|gb|KNA21403.1| (hypothetical protein SOVF_043130 [Spinacia oleracea])

HSP 1 Score: 83.2 bits (204), Expect = 2.600e-13
Identity = 44/73 (60.27%), Postives = 49/73 (67.12%), Query Frame = 1 

		  

Query: 23  KRDDVDRHLL-CIIQEKGRHPHNNDLSAPS------PPSRNMYGTGQGSSRCLYGCYLST 82
           +RDD DR L  C  QEK RHPHN+DLSAP       PPSR + G GQGSS C + C+LST
Sbjct: 421 QRDDADRLLFFCTRQEKDRHPHNDDLSAPPRWLRPPPPSRKISGIGQGSSPCSHDCHLST 480

Query: 83  IKVEQEDKATRSF 89
            K EQEDK TR F
Sbjct: 481 TKAEQEDKETRFF 493
[Close]
BLAST of Spo12421.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RPK0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_043130 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.800e-13
Identity = 44/73 (60.27%), Postives = 49/73 (67.12%), Query Frame = 1 

		  

Query: 23  KRDDVDRHLL-CIIQEKGRHPHNNDLSAPS------PPSRNMYGTGQGSSRCLYGCYLST 82
           +RDD DR L  C  QEK RHPHN+DLSAP       PPSR + G GQGSS C + C+LST
Sbjct: 421 QRDDADRLLFFCTRQEKDRHPHNDDLSAPPRWLRPPPPSRKISGIGQGSSPCSHDCHLST 480

Query: 83  IKVEQEDKATRSF 89
            K EQEDK TR F
Sbjct: 481 TKAEQEDKETRFF 493
The following BLAST results are available for this feature:
BLAST of Spo12421.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902229171|gb|KNA21403.1|2.6e-1360.2hypothetical protein SOVF_0431... [more]
back to top
BLAST of Spo12421.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RPK0_SPIOL1.8e-1360.2Uncharacterized protein OS=Spi... [more]
back to top
BLAST of Spo12421.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo12421.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top