Spo12560.1 (mRNA) | SpinachBase

Overview


Name	Spo12560.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	COP9 signalosome subunit 6 family protein
Location	chr6 : 9595993 .. 9606905 (-)
Sequence length	1694

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTTGCTCCTTAATCAAGGTTTCGGGTTTGAGCCTTGGGAATGGAAAAAATCTCAACTGGGAGGGATGCTGCCCATCGAGGTACCCATACAAACTCCCACGGGAGATTACCTCGCCGTAGGCGGTGGGAACTCCTCGTAGTAGAACAAAAAAAAAAGTAAGTAGTACAAAAGGGTATTGCTTAGGACTGTCGATGTTACAGTACGTAAATTAAGTTTATCCCTACTAGGAAAACTATTACTCCTAGTTGCCATAAAAAAAATTACAAACTTACTCCATCCATCTCTTTTTGTTCTTTACGTTTTCCTTTTTAGATGTGCCAAAATGTTCTTTACATTTTCTTTTATATTATCTCGAATTTTGATAAAAGTGAAAATCTAATATATATATATAAAGGGGAGTTTTTTGGAGAGCATTTAGAGCGTCCACGTAGGATTTTCATGTCATCATATATAATTAAATAATATTTTAGGTTTATTTTTTTAAAAAAAATACTAGAGTCTTGCCATGATTAAATTGGTATATATGATAAAGATAGATTCCAATAAAAAAATATCATTAGAGTCTTGCCATGATTAAATTGGTATATATGATAAAGATAAATACCAATAAAAACTTATCCTATTTCTCTTCTACCTTTTTGTACATATATATGAGGGAAACGTTTTTTGATGAATCATGCTTACTTTTTTTTATTCAGTTGAATAATCGTATGTGAGAGGTATATAAATCTAAAGGATGTTTAACGATAATTGCTTATGTATGGTCTAGGAGCACTGCATTTTGTAGAGCAAAATCGAAGCATAATAAGCTATGGTGTTCAAACTAATTCCACGGCAGTAGAAAGGAGATGAAAGTATAAAGATCCTACCTTCAAATTTCAGATTCCACTTCAAATTGTTGCTGAACGAGAGATTGACAGGTTTCTTATGGTATCCTCCATTTATATATCTCATATAATTCTATGGGTACAACGAAACGTCACAACTCATGCAAGTAAAAGTTCCATATGTTTTTTTTTCAAGCATGCCCATTGTACTTATTGATAATAAGTGGTGATTGTAGTTTCAGTTACATTAATAATAAGGATTCCATTTACTTTTTTAAGATCGATTACTCAACGCAGGTTCAAGATTCATCAAGAGAGTAGAAGGAGTCCTATATAAACATGTTCGTTAGCATTCTAATCGGAAGATTAAAAAAAATCATCAATATCCTCGCCTCCTGATGAGGTCCTTTTAATGTTATACGATGTTAATCATATAAAATAAAAACAATTTGTCACAATGAATTCATACTCCCTCGATAAATAAGACCACACTAGGCACATATGCTGCAATATATATCTCCATCATAAAAACTAAGCAGGTAATATTAAAGATAGCTTATCAAACCCTAAAAGATAAGAGAAAGTTATAGCTTTTGAAAATAATACAACAGGAACTAAGAAAGTTACTCACTCAAATAACCGAGCAAAAAGAATTTAAAGATACACTTGTGAGTAATTGGGCCGGGTGGTTTTAAGGTCTGATAACTACATTATTTATGATAAATAATGATGAATGAATTAAGCAATTGTGTCCAAAGTAAATACCCGGCCGAAAAATTTAGAAATGTAAATTTAAGTTTGAATCCCTTAACATTGAGTTATCTATAAATTGGTGAATGGAAATTTAATTAAAGTTGTCGATTTTCACAATTTCTGCTAAGTTATTTTTTTTTTGGTCTAATGAATCCTCATTACTATAAATATTTAACTAATATTATTCAAAATTTTAAGATAGAAATAGATAAATAAGTACCGGATAAAATATATATAAGAGATGAATTTTACTAGGAATAAAAAATATAGATAAGTACTAATTAAGTAAAAAGATAATAAGAGAAAAAGATACAAGAAGATATGATTGAAAACAAAAAGAGTTATATGAGGGATAGATCCTTCTAAGTATTTAATTTAAAAATATGAACCAAATACTTATTCTAACATAATATTTCCTAAGATAATTCTAACGTAATATATTCCTAATATTCTACACCATTGATTTTTTTTAATACTACGTTGAGCACATTATGAAAAGAAGAGAGGAGATGATATGATAACAATATTGTTATACACAAGTTCCTAACCTACATTTATACTCCAACTGGAAAAGTGAACTATTTTAAAATTTTATATAGATATACTTTATAAAACGGCTATTTGTATACAATGATATAATATATAAGACAAAAAAATATACAAAAATTGTCAAATGCACGGGCTTCAATACTAGTATTATATAAATTAATGTAATTTGCTTTGTTTAAATAAAAAGAATCTCAATGCACATTAATTAGTCGTTAAAACGCGTGTAAAAATCAAACGTAAATAACAAAAGAAACTGACGGAGTATATATTAATTTTAGTTCTCCAAATTCTCGATAGCTGGAGTTCGAATCACAGTACAAACCTACTAGTTCCCACCACTTCCCCTCCATCTCCCCTTCTTTTGCGCTTCCGCCTTCTGCTGGATTCCTGCTTCCAGAGTTCAAGGTGATCTTCAATTTCTTCATCTTCTTCGTTTTCCTGCAAAAGTTTCGACCTTTTTTTCTTCAAAAATTCGTTTCGTTAAAAATAATTTTCTGCGCTTAATTAATTAAACCTGAATTTTTAAACCTAAAACCATCGCAAATCACTTCTATTTCCCCTTTTGATTTCCCAATATCGTAATTTTCGGCAGCATTCCTACGCCAAAACCCTAACCTCCAATTTTCTCTCTCCTCTACGGTACTGCAGATATGGCGGAATCATCAAGCAGTGGGCTAACCTTCAAGCTTCATCCTTTGGTAATTCTCAACATCTCCGATCATTTTACCCGTGTCAGGTCTCAATTACAGCATCCAACACTCTCCAATGGCGGCGAACCGTGTCCCCCGCCAAGGGTTTACGGCTGTGTGATTGGTGTTCAGAAGGGAAGAACTGTTGAGATCTTCAACAGCTTTGAACTTCTCTATGATTCTGCGACCGACTCTCTTGACCGCGCCTTTCTCGAGAAGAAGCAGGAGCTTTGTGAGCCCTTTTTTCGTCAAATTGCAGTGTTTATTTGAGTTGTTTATGTGACGTTGTGAATAATCAAATTGATTTAGGGTGCTGTTTTGTGATTAATGGACAGATAAGAAGGTTTTCCCAAACTTTTATATACTAGGGTGGTATTCAACCGGGACTGATGCTCAAGAATCTGATATGCAGATACATAAAGCTGTGAGTTATTTGATGTTTCTGTTCATGTATTCATGTTTGTATTCCCTGTCCAGAGCTTGTTGTTTGAATAAATAATTGCATAATAGGGTTTGTGTCAGCTTGCGTTTTTTGTTCATTTAATTTTTGGGTTTGGCTGCTAGATAGGTGGTTAGTGTACGCTGTATTCCGTTCAAACAAAGAAAATTTAAACTCTGAACTAAATTTTATGGTCTATGGTAATCGTAACTGAAATCACTTTTCGAATTTCATGTTCTTTGTATTTGGTTCCTGGCTAGAAAAATTAGACAGGAAGAGGAGAAGAGAATGAAGGGGAGGGGAGAAGAAGAGAAGGTTTAGGCATATAGTGAATGACATTACTTTTTAATCCGTACAAGACAAATCTTGTCCACCTAGGAAAATGTTCTATTTGGTAACCAAACATAGAATTTATTTTATTTTATGGAGGTCATTCATCTTATAAGAAACTAATGCAGAACTATTCGGATAAGAAGAAAGATTTACATATGGTTTTTATTGATTTGGAGAAGGCATTGATAAGGTACCGAGGGAAGTACTTTGATGGCTTTAACAAGGAAAATAATTTTACAAAAATATATTGACATCATTAAGGACATGTGTGAGAGAGCTAGCACGAGTGTGTGGACCAATGTTGGAAAGATAGAGGAGTTTCCTATTACGATTGGAGTACATCAAAGTTCGAACTTAGCCCTTTTCTCTTTGCCATAGTAATGGATGAATTGACGAGTTCAATTCAAGATAGTATACCATGATGCATGTTGTTAGATGAATTGTGTTGGTCGATGAAACGAAAGGTGTGGAAAGTAAGTTGGAATTATGGAGACATACGTTGGAGACATACGTTGGAGACATACGTTGGAGACATACGTTGGAATCTAATGACTTTAAGTTGAGTAGAAGTAAAATAAAATATTTTGAAGTGTAAGTTTTGCGGAGGCATGGGCAATCCATTTGGATGGGAGGACCGTAGAAAGTTCAGATTTCTTGGGGAATTGGATGGAGATGTCACCCATAGAATGTTGGTTGAAGTGGAAGAGTGTTTCAGGGTTTCTATGTATTCTATGTGATCCAGGTATGCCCCATAAATGGAAGGGGAAATTGTACCGTATGACAATTAGACTTGAACTATTATATGGTATGGAATGTTGGATGTAAAGTAATGTCACATTCATAAGTTGAATGTCGCGGAGATGCGTATGTTGCGTTGAATGTGTAGCCATACAAGGAAGGATTGGTTGAGGTAATGAGGTGATTAGCAACAAAAGTGGGGCTTACACCGAATGGCAACAAAGAGGGAAAATCGACTAAGGTGGTTTAGCCATGTAAGATGGTTGCCAAATGATGCGCCGGTTAGGAGGATTAAAGAGTGGCAAACCGATGTAATTTTGAGGGTAGGAAGACCAAAGCAAACATGGAAGAGGGTGATTGAGAGTGACATGAGTTTATTAGGGATTGAGAGTGACATGAGTTTATTAGGGATTGAGAGTGACATGAGTTTATTAGGGATTGAGGAAAATATGACGTTAGATGGAGTGGAGGAAGATAAGACATGCCGACGACTCAACATGACTTATTTTCCATTACTTTCTCTTTTTTCTATTTTCTTTGTAAACTTCTCTCGTTTTCTTTTTGTTTTCAAAACAATTTTTTCTTTTGCCTCTTTTGTAAACCGGCGGCTCATCTTGTTTTCGTATTATCTCTTTTTCGTGCCTCGTGTATACTCTCTTTAACATAACCTTTTTTTATTTCTCTTACTTCACACGGTTCCTTATGAAGGTTCATGTTAGCCTACCCCATTCATTATGGACTAAAGCTTGGTTGTTGCTGTAACCAAACAGATAAAAGTTGGAAAACTAAGTTTCTTTCTCCTAAAAGGGATTTGTGTTCCGCAAAACCGAACCTTAATCGCTTAATTCTTTCTCCTGGAAGTATTGAAGTGGTTTTCTGAATTTGTTGATGATATTGGAGTTTCTAGTACATAGGAAGAGGGAAAGAGAGGTCGTTTTGAACTCGAATATTAGCACTTATCACTCAATTGTCTGAGTTTGTTGGTGTGCTTGTATCAAACAATTTTTTGAACAGTTTGGGTAAAGCCAATATTGAAGCTGCCTTTCTGAAACATGTTGGTCATGTTCCGATGGTGTTTTACTAGCTATTCCAAGATTTAAATTATTCTGTTTGCCATTTTTTTTACGGGGATGTTTTACTCTACAGTTTGTGGTGTGTGGCTTGAGATTTCTGAGGCTATTATGTTTCTTTTCTCCCAAGTCAGTCAATTAATCTTTTGATCAGAAACATCTATCTCCATATTGTTATTGTTCAATATATTGTATCTCATTACAATATCTTTTACTAGACATCTACCGAGACCGCGGTAGAGTAGTCAAAAGTATGCAATTTGTTAATTGCAAAGAGTATCTAGTTGAAAGAGACTATCTGTTAGATCCTTGTTTTAAAAAGTCAATTCGGTGGCCTTCTTTCTCTCCCAGTGGAAACTTGAAAGAGACTGTCTGCTAATAAGACATAAAGGGTATATCTGCTTGTCTTTCTCTTGTCCTACACAGTGATACAGTAGATTCATTTTCATGTTTTTGATTTGGCAATTGGACAACGGTGCTCAAATTGCTTTCTAAGAGTTGGGTTAATCCTCTGGTAGTTTTTTAATAACCTAAAAAGCACCATTTTGGGGTTAACTGTTGTTGTTGAGTTTATAAGATGTCTGCCCTCAAAAGCATGCATGTGTCCAGTACCATCGACACTTTATTTCTCCACCTGTAAATGTTGATTGTGGTACTGTTACAGCTGATGGATATCAACGAGAGTCCTATTTATGTCCTACTCCATCCTTCCATTAATCATGCACAAAAGGATCTTCCAGTCAGCATCTTCGAAAATGGTATGTTTGATTTCTCCCAGCCATTTCCTCCACTTGTGTAGCATGCTGATGTGAACTTGAGTTTTCAGTCCCCCCTTTTCTTTAATGATTTAAAGACCATGTTGGACATCGCTTTTGTTTTATCTTTGTGAATTGTGATTTTCTTATATTTCCTTTATGTTTTAAATGATTTGGTGTAGAAATAATGCCTAAAAGTTATCTCCCTTGGTTATATTGTGCCGCCTTTTGCTATTTTTTCCAAACAGTCCAGTGTTGCATACATTGACAATGAAATATTGTTACCTTGCAGATGTTTGGTACGTTTGAATAGGAATTTGGGATTTTGGGGAATAGAGTGTGAGATTGGAATGAGAATTTGTTGGTGGGAATTCCTTGATATCTTGTTTGGGTAGTGATGAGAAATAAATTAGGAATACATTACAAACTTACCCAAACGCCCTTATAATACAATTCATCTTTCTTATTCATTAATGACATTTTGGATATTTCTCAATTCCCTTCATCAATTCCCACCCCTCCCTTGGGAATAAAATCATGGAATTGAAAATTTGAAATCAACATTTCCGATTCCCAAACCCATTTTCGTTTCCCATTCCTCCCTAGCAAACATGGGGAATGGACCAAGTTAGGAAATAAATGTTCATTCCCAAGTCCACATTTCCTACTAAACAAACACACTCTTGAGGTAGTCTGGAATACTTAAAACGACGAATTTTGTGCACTTGAAATTGGATTAGCCCTTGCACCAAGAAGTGATTACTAATGTGTGTGAAATGATTTTCCCGGATGTTTCTCATGGCATTAAAATGGATACAGGTGTTTGTGAATGATTAGATTTTCCCCTTGTTTAGGGAAACAATTTGGTATAGCTCTGCTATGAGATCTCTGTCTCATTGCTGTCCTTAACTTTTCTACATTAATTACTTGTTGTCTAGTATTGAAGAGATACCAAACCACCGGGGTTGCCATCATTATCTGCCTTTTTCTTTCATAACTTCTGAGAAGTTGTCTTATGAGAGTGTTAGAGCATCTCCATTGGTAAACTATATGGTGTTGTTGTTTGGATTGTCGCATAGTATTTTGAAGCTACAAACTCTCCAATGGTGAGCTACAACACTTTGTAGCTTGCAAAATAAAAAACAAAATAAATATTCTTTTAGTACAATTTTCATAATTTACTTGGAGCTATTTTTTTCAAGCATAACAACTTGCAAGCTAAATATCTTTTTTGTTCTCCAATGGTAAGCTTGTAGCTACATATTTTTAAAGCAACTCCAGTGGATATTGCTTGCAATAAAAATAAAACGTGTAGCTACAAGCTTACCATTCAAGAACAAAAAAGTTGTAGTTTGCATGCGATTGTAGCTTAAACAAGCTACATGCTTGATAGAAAAACTTCAGTTAAACTATGACAATTGCACTACAATTTTTTATATGTAAGTATTTTACTTTACAAACTACAAAGTGTTGAAGTCCACCATTGAAGAAGTTTCTAGCTTCAAAATGTTGTAGCTTCAACATATGATGTAGCAATCCAAACTACAACACCTTGTAGTTTACCATTGGAGGTCTGTGCTAAGAGATTCAAACTCTGAAGTTAGTGTTTGTTGGGTCAATGTACGAGACCAATGCAAAGGAATTGTAATTTGCATGATATGGAAAGCGTCTGTTTGGACATGTATGTTACGTTCTCAACTGAAGAGATAATACTATCTTATTAGTTGGTTTCAGTGATGTTCTACTTTCAAGGGAAATGGTCTATTTGCTGATTTCGTCCAGTTAGGATTGCTTTACTTCTTATCCTCCCTTGTCTGGTCTATCGGTAAGAGCTATATTGGTTGTGGTAGATTTGGTTATCGTTAATGATAATGCAGATTCTTACTTGATTGTAACCTGAGTTTATTGCTTGGTTGTCCCTTGAACTAGACATATCTCAGCTTGGACTAAGAAATCAAGATTTGTATCACTTCCAGGTTGCAGCTTGTGGCAAGGCGATGCCTTTTTTCCCCTACCTGACCTTGTTTAATTGTTGTGATTGTTAAATTTCAGAACTGCATGTTATTGATGGTCTTCCACAACTAACCTTTGTTCGTTCGAGCTACACCATTGAGGTATGATATATCCCTGCTTCACTTCTCCCTTTCCTGGTATCTCTGTAACGGTCTCGGCATATTTATGCTGCATGACTGAGTCGTTCTTTTTATTTTCTTGAAGACAGTTGAAGCGGAAAGGATCTCAGTTGACCATGTTGCACATCTTAAACCAGCTGATGGTGGTTCTGCTGCCACCCAATGTGAGCTCAGCTGCTTAATTTCCCTTCTGAAAAATAAATAAAACTGAAGTGGACAGGTGTTTTAATTTCTGCGTTTCACAAATTGTGTTTTGTATGCAGTGGCTGCTCATTTGACTGGTATTCACAGTGCAATAAAGATGTTGAATAGTCGAGTGAAAGTGCTGCTCCAATATCTTTCTTCTATGCAGAAAGGTAACTTATCTGTTCATCGGTTTATCCATTACCTTGAAACCTTATTTAAGATGGGCTGTGTGACAGTGTTTGTTATACAACTAGTTCTATTTAGTGATCTAGGATGAAGCATGTCCTTGGCTTTAGTAGAATTTGATATTCCGTGACCGATAATTTAACAGCAGAACTATATATTTGTTCTGTTCACCAATTGGCCATACAGTTCATACGTTGTTCAATACATTCCTGATAAGCTGCAAGTCTAACAATATCAAATTTTTACATCACTTTTGGGAATATGAACAGGCTTACTGTGTCATCATGTTAGCATGAAAAAGTGAGATGAGACGCATAGTATAGTTTGACTCGTGTGGCTGACTAATTAACATGGTCTGTAATTGCTTTCATTTTTCATTGCAGGTGAAATTCCTTGCGAGAATTCACTGTTGAGAGAAGTTTCAAGTCTTCTGCGGAGATTACCAGCTATTGAATCTGGGAAATTTCAAGATGATTTTCTGATGGTGAGTACTCTGTCTTTATTGGCAGCTTAAAGGATTGTGAATATACTTTTTCTCTTGGAGATATGAAATTTTTTACTTATCTTTTAGTCATCTACGGGATTCGTATTTATGCAAAAAGAGTTATCTGAGTTAGGGATCTTTCTTTTACAGGAATACAACGACACCATTCTGGTTACCTATCTTGCCATGTTGACTAACTGCTCAAGGTAATGGACATTCAGAATTAAGCCTTCTTCTGATTGAACCCCTTATTTCTCTTTTTGGGTCAGTCCAGTTATGACTAGTTTTGAAGACGTGCTTACTTTTCCATCTACAGATCTACCTACCGAACAACTGTTGCTATTATGTCTAGCAATGTTTCGAGCTTTCTATGTTTTATTTTTTGGCAATAAATATTTTTACATTACCACTATGGATTCTTTTACTTGATAGCCTTTTATGTGCTAACCATATACAAAGTAGTTGTGTACACCTTGAATTCTCTAGATCTGATATTCGATAATACGAGTAGGTGTTATTGTCTGTTTCTCCTTTACCTGATCTCTTTCGTTGCAATCTGACCATTCAGCGAGGTCTCTTGTGTACACCTTGAATTCTCTAGATCTGATATTCGATAATACGAGTAGGTGTTATTGTCTGTTTCTCCTTTACCTGATCTCTTTCGTTGCAATCTGACCATTCAGCGAGGTCTCTTTGAATTTGTCATTTTTGGGTGAGTGGACATATTCTTTACTTGGCTGTTGCTCCTAACATAGGAAGGCTGTTGCCATTTCCACGGGATTCTCATGACCTTATTTTAACGCAGGTAAGACTGTGGGAAGGCTTTTATAGTAGTCGTAAAGCGACTGTATATTTTTTTGGGATACTAATGTCGGTCAATATACAAATTGTTGATGTGTAATTTGATTAGATTAAATAGGACTGAACTTGTTTTAGATTCTTGTTCTATTTCATGTCTAAATTTTCTTATTTTGCATGAATGTTAAGCCTAATTTTTGGTTCTTCTATGCAGTACGATGAGCGAGCTTGTCGACAAAATCAACATTGCATACGACAGGCACAGTAGAAGGGGAGGACGGACTGCTTTTATATGAGCCTATCAGCACCATTAACCACAACCATCTTTCCAGTTGGAGCCGAGTTTTTGATTCTGAAGCTGATTTTCTGGATCAGGAATTTTGGTATCTTTGATTAAAGAAAAATGCGGCAAATCAAAAGTAGATTGTTAGAGAAGTTAGTAACTTATTGCCTTTTGTTACAGGGTACTTCAGCAGTACATTCTCTTGTGATTTTTCGGTCTCCATTTCAGTAAAGGTGGTTTCCTGAGTTCATCATTGTGTGACTGTGTCTATGATTTTGATTTACTGTGGTGGGGAGGGCAAGTTATTGGATATTTTGTGAATATTATGGTGGAATATTATGATGGAAACGGATCAAGGAAAATTGGTGTGACTTCTCATATTTTCGCTCCATTCGTTATTTTGTCCATTGTTTTTTATTTGGAGTTGGAAAATCGGGGAGTTAGGGAAAACGGATGATAACTTTCCGAACTTCTTATTTTTATCCTAAGCTACCTAAGACGCAAGGTTGCCTGCTTAGTTCTTTGGCTTGGTTTCCATCCGTAAGGTCTCTTGCCCGGCTGTTCTCCTGGCTCATATGTTGGCTACTTTATACTCGTCGTCATCTTATTTGTCATAGGTTTTAGTTTGTCTGTTTTTTTGGTTTTTGTTTTGTTCTTCTTTGCTTTTGTTGTTCTCTTTTCTAG

mRNA sequence

ATGGCCTCTTGCTCCTTAATCAAGGTTTCGGGTTTGAGCCTTGGGAATGGAAAAAATCTCAACTGGGAGGGATGCTGCCCATCGAGAGTTCAAGATATGGCGGAATCATCAAGCAGTGGGCTAACCTTCAAGCTTCATCCTTTGGTAATTCTCAACATCTCCGATCATTTTACCCGTGTCAGGTCTCAATTACAGCATCCAACACTCTCCAATGGCGGCGAACCGTGTCCCCCGCCAAGGGTTTACGGCTGTGTGATTGGTGTTCAGAAGGGAAGAACTGTTGAGATCTTCAACAGCTTTGAACTTCTCTATGATTCTGCGACCGACTCTCTTGACCGCGCCTTTCTCGAGAAGAAGCAGGAGCTTTATAAGAAGGTTTTCCCAAACTTTTATATACTAGGGTGGTATTCAACCGGGACTGATGCTCAAGAATCTGATATGCAGATACATAAAGCTCTGATGGATATCAACGAGAGTCCTATTTATGTCCTACTCCATCCTTCCATTAATCATGCACAAAAGGATCTTCCAGTCAGCATCTTCGAAAATGAACTGCATGTTATTGATGGTCTTCCACAACTAACCTTTGTTCGTTCGAGCTACACCATTGAGACAGTTGAAGCGGAAAGGATCTCAGTTGACCATGTTGCACATCTTAAACCAGCTGATGGTGGTTCTGCTGCCACCCAATTGGCTGCTCATTTGACTGGTATTCACAGTGCAATAAAGATGTTGAATAGTCGAGTGAAAGTGCTGCTCCAATATCTTTCTTCTATGCAGAAAGGTGAAATTCCTTGCGAGAATTCACTGTTGAGAGAAGTTTCAAGTCTTCTGCGGAGATTACCAGCTATTGAATCTGGGAAATTTCAAGATGATTTTCTGATGGAATACAACGACACCATTCTGGTTACCTATCTTGCCATGTTGACTAACTGCTCAAGTACGATGAGCGAGCTTGTCGACAAAATCAACATTGCATACGACAGGCACAGTAGAAGGGGAGGACGGACTGCTTTTATATGAGCCTATCAGCACCATTAACCACAACCATCTTTCCAGTTGGAGCCGAGTTTTTGATTCTGAAGCTGATTTTCTGGATCAGGAATTTTGGTATCTTTGATTAAAGAAAAATGCGGCAAATCAAAAGTAGATTGTTAGAGAAGTTAGTAACTTATTGCCTTTTGTTACAGGGTACTTCAGCAGTACATTCTCTTGTGATTTTTCGGTCTCCATTTCAGTAAAGGTGGTTTCCTGAGTTCATCATTGTGTGACTGTGTCTATGATTTTGATTTACTGTGGTGGGGAGGGCAAGTTATTGGATATTTTGTGAATATTATGGTGGAATATTATGATGGAAACGGATCAAGGAAAATTGGTGTGACTTCTCATATTTTCGCTCCATTCGTTATTTTGTCCATTGTTTTTTATTTGGAGTTGGAAAATCGGGGAGTTAGGGAAAACGGATGATAACTTTCCGAACTTCTTATTTTTATCCTAAGCTACCTAAGACGCAAGGTTGCCTGCTTAGTTCTTTGGCTTGGTTTCCATCCGTAAGGTCTCTTGCCCGGCTGTTCTCCTGGCTCATATGTTGGCTACTTTATACTCGTCGTCATCTTATTTGTCATAGGTTTTAGTTTGTCTGTTTTTTTGGTTTTTGTTTTGTTCTTCTTTGCTTTTGTTGTTCTCTTTTCTAG

Coding sequence (CDS)

ATGGCCTCTTGCTCCTTAATCAAGGTTTCGGGTTTGAGCCTTGGGAATGGAAAAAATCTCAACTGGGAGGGATGCTGCCCATCGAGAGTTCAAGATATGGCGGAATCATCAAGCAGTGGGCTAACCTTCAAGCTTCATCCTTTGGTAATTCTCAACATCTCCGATCATTTTACCCGTGTCAGGTCTCAATTACAGCATCCAACACTCTCCAATGGCGGCGAACCGTGTCCCCCGCCAAGGGTTTACGGCTGTGTGATTGGTGTTCAGAAGGGAAGAACTGTTGAGATCTTCAACAGCTTTGAACTTCTCTATGATTCTGCGACCGACTCTCTTGACCGCGCCTTTCTCGAGAAGAAGCAGGAGCTTTATAAGAAGGTTTTCCCAAACTTTTATATACTAGGGTGGTATTCAACCGGGACTGATGCTCAAGAATCTGATATGCAGATACATAAAGCTCTGATGGATATCAACGAGAGTCCTATTTATGTCCTACTCCATCCTTCCATTAATCATGCACAAAAGGATCTTCCAGTCAGCATCTTCGAAAATGAACTGCATGTTATTGATGGTCTTCCACAACTAACCTTTGTTCGTTCGAGCTACACCATTGAGACAGTTGAAGCGGAAAGGATCTCAGTTGACCATGTTGCACATCTTAAACCAGCTGATGGTGGTTCTGCTGCCACCCAATTGGCTGCTCATTTGACTGGTATTCACAGTGCAATAAAGATGTTGAATAGTCGAGTGAAAGTGCTGCTCCAATATCTTTCTTCTATGCAGAAAGGTGAAATTCCTTGCGAGAATTCACTGTTGAGAGAAGTTTCAAGTCTTCTGCGGAGATTACCAGCTATTGAATCTGGGAAATTTCAAGATGATTTTCTGATGGAATACAACGACACCATTCTGGTTACCTATCTTGCCATGTTGACTAACTGCTCAAGTACGATGAGCGAGCTTGTCGACAAAATCAACATTGCATACGACAGGCACAGTAGAAGGGGAGGACGGACTGCTTTTATATGA

Protein sequence

MASCSLIKVSGLSLGNGKNLNWEGCCPSRVQDMAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLSNGGEPCPPPRVYGCVIGVQKGRTVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQESDMQIHKALMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTIETVEAERISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGEIPCENSLLREVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKINIAYDRHSRRGGRTAFI

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo12560	Spo12560	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo12560.1	Spo12560.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12560.1.CDS.11	Spo12560.1.CDS.11	CDS
Spo12560.1.CDS.10	Spo12560.1.CDS.10	CDS
Spo12560.1.CDS.9	Spo12560.1.CDS.9	CDS
Spo12560.1.CDS.8	Spo12560.1.CDS.8	CDS
Spo12560.1.CDS.7	Spo12560.1.CDS.7	CDS
Spo12560.1.CDS.6	Spo12560.1.CDS.6	CDS
Spo12560.1.CDS.5	Spo12560.1.CDS.5	CDS
Spo12560.1.CDS.4	Spo12560.1.CDS.4	CDS
Spo12560.1.CDS.3	Spo12560.1.CDS.3	CDS
Spo12560.1.CDS.2	Spo12560.1.CDS.2	CDS
Spo12560.1.CDS.1	Spo12560.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12560.1.utr3p.1	Spo12560.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12560.1.exon.11	Spo12560.1.exon.11	exon
Spo12560.1.exon.10	Spo12560.1.exon.10	exon
Spo12560.1.exon.9	Spo12560.1.exon.9	exon
Spo12560.1.exon.8	Spo12560.1.exon.8	exon
Spo12560.1.exon.7	Spo12560.1.exon.7	exon
Spo12560.1.exon.6	Spo12560.1.exon.6	exon
Spo12560.1.exon.5	Spo12560.1.exon.5	exon
Spo12560.1.exon.4	Spo12560.1.exon.4	exon
Spo12560.1.exon.3	Spo12560.1.exon.3	exon
Spo12560.1.exon.2	Spo12560.1.exon.2	exon
Spo12560.1.exon.1	Spo12560.1.exon.1	exon

Homology

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BLAST of Spo12560.1 vs. NCBI nr
Match: gi|902221649|gb|KNA18960.1| (hypothetical protein SOVF_065350 [Spinacia oleracea])

HSP 1 Score: 615.1 bits (1585), Expect = 7.100e-173
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 1

		  
Query: 33  MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLSNGGEPCPPPRVYGCVIGVQKGR 92
           MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLSNGGEPCPPPRVYGCVIGVQKGR
Sbjct: 1   MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLSNGGEPCPPPRVYGCVIGVQKGR 60

Query: 93  TVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQESDMQIHKA 152
           TVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQESDMQIHKA
Sbjct: 61  TVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQESDMQIHKA 120

Query: 153 LMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTIETVEAERIS 212
           LMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTIETVEAERIS
Sbjct: 121 LMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTIETVEAERIS 180

Query: 213 VDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGEIPCENSLLR 272
           VDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGEIPCENSLLR
Sbjct: 181 VDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGEIPCENSLLR 240

Query: 273 EVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKINIAYDRHSR 332
           EVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKINIAYDRHSR
Sbjct: 241 EVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKINIAYDRHSR 300

Query: 333 RGGRTAFI 341
           RGGRTAFI
Sbjct: 301 RGGRTAFI 308

[Close]

BLAST of Spo12560.1 vs. NCBI nr
Match: gi|731349970|ref|XP_010686267.1| (PREDICTED: COP9 signalosome complex subunit 6a-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 572.0 bits (1473), Expect = 6.900e-160
Identity = 286/310 (92.26%), Postives = 298/310 (96.13%), Query Frame = 1

		  
Query: 33  MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLSNGGEPCPP--PRVYGCVIGVQK 92
           MA SSSSGLTFKLHPLVILNISDHFTRV+SQLQHP+ SNGGEP P   PRVYGCVIGVQ+
Sbjct: 1   MAASSSSGLTFKLHPLVILNISDHFTRVKSQLQHPSHSNGGEPSPAHSPRVYGCVIGVQR 60

Query: 93  GRTVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQESDMQIH 152
           GRTVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDA+ESDM IH
Sbjct: 61  GRTVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAEESDMHIH 120

Query: 153 KALMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTIETVEAER 212
           KALMDINESP+YVLLHPSINHAQKDLPVSI+E+ELHVI+GLPQL FVRSSYTIETVEAER
Sbjct: 121 KALMDINESPVYVLLHPSINHAQKDLPVSIYESELHVIEGLPQLIFVRSSYTIETVEAER 180

Query: 213 ISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGEIPCENSL 272
           ISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRV+VLLQYL SMQKGEIPCENSL
Sbjct: 181 ISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVRVLLQYLVSMQKGEIPCENSL 240

Query: 273 LREVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKINIAYDRH 332
           LR+VSSLLRRLPAIESGKFQDDFLMEYNDT+LVTYLAMLTNCSS M+ELVDKIN AYDRH
Sbjct: 241 LRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLVTYLAMLTNCSSAMNELVDKINTAYDRH 300

Query: 333 SRRGGRTAFI 341
            RRGGRTAFI
Sbjct: 301 GRRGGRTAFI 310

[Close]

BLAST of Spo12560.1 vs. NCBI nr
Match: gi|225463552|ref|XP_002267156.1| (PREDICTED: COP9 signalosome complex subunit 6a [Vitis vinifera])

HSP 1 Score: 537.0 bits (1382), Expect = 2.500e-149
Identity = 267/317 (84.23%), Postives = 293/317 (92.43%), Query Frame = 1

		  
Query: 33  MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLS-NGGE--------PCPPPRVYG 92
           MA SSSSGLTFKLHPLVI+NISDH+TRV+SQ Q P LS NGGE        P PPPRV+G
Sbjct: 1   MASSSSSGLTFKLHPLVIVNISDHYTRVKSQTQPPHLSSNGGEGAAAAASPPPPPPRVFG 60

Query: 93  CVIGVQKGRTVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQ 152
           CVIGVQ+GRTVEIFNSFELLYD +T SLDR+FLEKKQELYKKVFPNFYILGWYSTG+DAQ
Sbjct: 61  CVIGVQRGRTVEIFNSFELLYDPSTHSLDRSFLEKKQELYKKVFPNFYILGWYSTGSDAQ 120

Query: 153 ESDMQIHKALMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTI 212
           ESDM IHKALMDINESP+YVLL+PSINHAQKDLPV+I+E+ELHVIDG+PQL FVR++YTI
Sbjct: 121 ESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIDGIPQLIFVRANYTI 180

Query: 213 ETVEAERISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGE 272
           ETVEAERISVDHVAHLKP+DGGSAATQLAAHLTGIHSAIKMLNSR++VL  YL +MQKG+
Sbjct: 181 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLLAMQKGD 240

Query: 273 IPCENSLLREVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKI 332
           IPCENSLLR+VSSLLRRLPAIESGKFQDDFLMEYNDT+L++YLAM TNCSSTM+ELVDK 
Sbjct: 241 IPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMFTNCSSTMNELVDKF 300

Query: 333 NIAYDRHSRRGGRTAFI 341
           N AYDRHSRRGGRTAFI
Sbjct: 301 NTAYDRHSRRGGRTAFI 317

[Close]

BLAST of Spo12560.1 vs. NCBI nr
Match: gi|1009107791|ref|XP_015881485.1| (PREDICTED: COP9 signalosome complex subunit 6a [Ziziphus jujuba])

HSP 1 Score: 526.6 bits (1355), Expect = 3.300e-146
Identity = 263/325 (80.92%), Postives = 289/325 (88.92%), Query Frame = 1

		  
Query: 33  MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHP-TLSNGGEPC--------------- 92
           MA SSSSGLTFKLHPLVI+NISDH+TRV+SQ+  P T +NG +                 
Sbjct: 1   MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMHPPLTATNGADGVDNTSSSPSSSSSSPS 60

Query: 93  --PPPRVYGCVIGVQKGRTVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILG 152
             PPPRVYGCVIG+Q+GRTVEIFNSFELLYD +T SLDRAFLEKKQELYKKVFP+FYILG
Sbjct: 61  RSPPPRVYGCVIGIQRGRTVEIFNSFELLYDPSTHSLDRAFLEKKQELYKKVFPHFYILG 120

Query: 153 WYSTGTDAQESDMQIHKALMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQL 212
           WYSTG+DAQESDM IHKALMDINESP+YVLL+PSINHAQKDLPV+IFE+ELHVIDG+PQL
Sbjct: 121 WYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIFESELHVIDGIPQL 180

Query: 213 TFVRSSYTIETVEAERISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQ 272
            FVR+SYTIETVEAERISVDHVAHLKP+DGGSAATQLAAHLTG HSAIKMLNSR++VL  
Sbjct: 181 IFVRASYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGTHSAIKMLNSRIRVLHH 240

Query: 273 YLSSMQKGEIPCENSLLREVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSS 332
           YL SMQKG+IPCENSLLR+VSSLLRRLPAIESGKFQDDFLMEYNDT+L+TYLAM TNCSS
Sbjct: 241 YLLSMQKGDIPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLITYLAMFTNCSS 300

Query: 333 TMSELVDKINIAYDRHSRRGGRTAF 340
           +M+ELVDK N AYDRHSRRGGRTAF
Sbjct: 301 SMNELVDKFNTAYDRHSRRGGRTAF 325

[Close]

BLAST of Spo12560.1 vs. NCBI nr
Match: gi|1012179800|ref|XP_015967866.1| (PREDICTED: COP9 signalosome complex subunit 6a-like [Arachis duranensis])

HSP 1 Score: 526.2 bits (1354), Expect = 4.300e-146
Identity = 261/308 (84.74%), Postives = 286/308 (92.86%), Query Frame = 1

		  
Query: 33  MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLSNGGEPCPPPRVYGCVIGVQKGR 92
           MA SSSSGLTFK+HPLVI+NISDH+TRV+SQL  P  SN       PRVYG VIGVQKGR
Sbjct: 1   MASSSSSGLTFKVHPLVIVNISDHYTRVKSQLNPPN-SNASSNSSAPRVYGGVIGVQKGR 60

Query: 93  TVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQESDMQIHKA 152
           TVEIFNSFELLYDS+T SLDRAFLEKKQELYKKVFP+FYILGWYSTGTDA ESDM IHKA
Sbjct: 61  TVEIFNSFELLYDSSTHSLDRAFLEKKQELYKKVFPHFYILGWYSTGTDAHESDMHIHKA 120

Query: 153 LMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTIETVEAERIS 212
           LMDINESP+YVLL+PSINH+Q+DLPV+IFE+ELHVIDG+PQL FVRSSYTIETVEAERIS
Sbjct: 121 LMDINESPVYVLLNPSINHSQRDLPVTIFESELHVIDGIPQLIFVRSSYTIETVEAERIS 180

Query: 213 VDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGEIPCENSLLR 272
           VDHVAHLKP+DGGSAATQLAAHLTGIHSAIKML+SR+KVL  YL +MQKG++PCENSLLR
Sbjct: 181 VDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLR 240

Query: 273 EVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKINIAYDRHSR 332
           +VSSLLRRLPAIESGKFQDDFLMEYNDT+L++YLAMLTNCSSTM+ELVDK N AYDRHSR
Sbjct: 241 QVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSTMNELVDKFNTAYDRHSR 300

Query: 333 RGGRTAFI 341
           RGGRTAF+
Sbjct: 301 RGGRTAFM 307

[Close]

BLAST of Spo12560.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RHK5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_065350 PE=4 SV=1)

HSP 1 Score: 615.1 bits (1585), Expect = 4.900e-173
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 1

		  
Query: 33  MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLSNGGEPCPPPRVYGCVIGVQKGR 92
           MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLSNGGEPCPPPRVYGCVIGVQKGR
Sbjct: 1   MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLSNGGEPCPPPRVYGCVIGVQKGR 60

Query: 93  TVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQESDMQIHKA 152
           TVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQESDMQIHKA
Sbjct: 61  TVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQESDMQIHKA 120

Query: 153 LMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTIETVEAERIS 212
           LMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTIETVEAERIS
Sbjct: 121 LMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTIETVEAERIS 180

Query: 213 VDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGEIPCENSLLR 272
           VDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGEIPCENSLLR
Sbjct: 181 VDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGEIPCENSLLR 240

Query: 273 EVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKINIAYDRHSR 332
           EVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKINIAYDRHSR
Sbjct: 241 EVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKINIAYDRHSR 300

Query: 333 RGGRTAFI 341
           RGGRTAFI
Sbjct: 301 RGGRTAFI 308

[Close]

BLAST of Spo12560.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ENA5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g181420 PE=4 SV=1)

HSP 1 Score: 572.0 bits (1473), Expect = 4.800e-160
Identity = 286/310 (92.26%), Postives = 298/310 (96.13%), Query Frame = 1

		  
Query: 33  MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLSNGGEPCPP--PRVYGCVIGVQK 92
           MA SSSSGLTFKLHPLVILNISDHFTRV+SQLQHP+ SNGGEP P   PRVYGCVIGVQ+
Sbjct: 1   MAASSSSGLTFKLHPLVILNISDHFTRVKSQLQHPSHSNGGEPSPAHSPRVYGCVIGVQR 60

Query: 93  GRTVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQESDMQIH 152
           GRTVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDA+ESDM IH
Sbjct: 61  GRTVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAEESDMHIH 120

Query: 153 KALMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTIETVEAER 212
           KALMDINESP+YVLLHPSINHAQKDLPVSI+E+ELHVI+GLPQL FVRSSYTIETVEAER
Sbjct: 121 KALMDINESPVYVLLHPSINHAQKDLPVSIYESELHVIEGLPQLIFVRSSYTIETVEAER 180

Query: 213 ISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGEIPCENSL 272
           ISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRV+VLLQYL SMQKGEIPCENSL
Sbjct: 181 ISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVRVLLQYLVSMQKGEIPCENSL 240

Query: 273 LREVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKINIAYDRH 332
           LR+VSSLLRRLPAIESGKFQDDFLMEYNDT+LVTYLAMLTNCSS M+ELVDKIN AYDRH
Sbjct: 241 LRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLVTYLAMLTNCSSAMNELVDKINTAYDRH 300

Query: 333 SRRGGRTAFI 341
            RRGGRTAFI
Sbjct: 301 GRRGGRTAFI 310

[Close]

BLAST of Spo12560.1 vs. UniProtKB/TrEMBL
Match: D7UAV8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g01950 PE=4 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 1.700e-149
Identity = 267/317 (84.23%), Postives = 293/317 (92.43%), Query Frame = 1

		  
Query: 33  MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLS-NGGE--------PCPPPRVYG 92
           MA SSSSGLTFKLHPLVI+NISDH+TRV+SQ Q P LS NGGE        P PPPRV+G
Sbjct: 1   MASSSSSGLTFKLHPLVIVNISDHYTRVKSQTQPPHLSSNGGEGAAAAASPPPPPPRVFG 60

Query: 93  CVIGVQKGRTVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQ 152
           CVIGVQ+GRTVEIFNSFELLYD +T SLDR+FLEKKQELYKKVFPNFYILGWYSTG+DAQ
Sbjct: 61  CVIGVQRGRTVEIFNSFELLYDPSTHSLDRSFLEKKQELYKKVFPNFYILGWYSTGSDAQ 120

Query: 153 ESDMQIHKALMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTI 212
           ESDM IHKALMDINESP+YVLL+PSINHAQKDLPV+I+E+ELHVIDG+PQL FVR++YTI
Sbjct: 121 ESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIDGIPQLIFVRANYTI 180

Query: 213 ETVEAERISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGE 272
           ETVEAERISVDHVAHLKP+DGGSAATQLAAHLTGIHSAIKMLNSR++VL  YL +MQKG+
Sbjct: 181 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLLAMQKGD 240

Query: 273 IPCENSLLREVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKI 332
           IPCENSLLR+VSSLLRRLPAIESGKFQDDFLMEYNDT+L++YLAM TNCSSTM+ELVDK 
Sbjct: 241 IPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMFTNCSSTMNELVDKF 300

Query: 333 NIAYDRHSRRGGRTAFI 341
           N AYDRHSRRGGRTAFI
Sbjct: 301 NTAYDRHSRRGGRTAFI 317

[Close]

BLAST of Spo12560.1 vs. UniProtKB/TrEMBL
Match: A0A067K375_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19231 PE=4 SV=1)

HSP 1 Score: 525.8 bits (1353), Expect = 3.900e-146
Identity = 261/316 (82.59%), Postives = 285/316 (90.19%), Query Frame = 1

		  
Query: 33  MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLSNGGE--------PCPPPRVYGC 92
           MA SSSSGLTFKLHPLVI+NISDH+TRV+SQ+  P  SN             PPPRVYGC
Sbjct: 1   MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPPVTSNNNSNGSGVAPAQAPPPRVYGC 60

Query: 93  VIGVQKGRTVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQE 152
           VIGVQ+GRTVEIFNSFELLYD  + SLDR FLEKKQELYKKVFP+FYILGWYSTG+DA+E
Sbjct: 61  VIGVQRGRTVEIFNSFELLYDPISHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAEE 120

Query: 153 SDMQIHKALMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTIE 212
           SDM IHKALMDINESP+YVLL+PSIN AQKDLPV+I+E+ELHVIDG+PQL FVRSSYTIE
Sbjct: 121 SDMHIHKALMDINESPVYVLLNPSINPAQKDLPVTIYESELHVIDGIPQLIFVRSSYTIE 180

Query: 213 TVEAERISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGEI 272
           TVEAERISVDHVAHLKP+DGGSAATQLAAHLTGIHSAIKMLNSR++VL  YL++MQKGEI
Sbjct: 181 TVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLAAMQKGEI 240

Query: 273 PCENSLLREVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKIN 332
           PCENSLLR+VSSLLRRLPAIES KFQDDFLMEYNDT+L+TYLAM TNCSSTM+ELVDK N
Sbjct: 241 PCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLITYLAMFTNCSSTMNELVDKFN 300

Query: 333 IAYDRHSRRGGRTAFI 341
            AYDRHSRRGGRTAFI
Sbjct: 301 TAYDRHSRRGGRTAFI 316

[Close]

BLAST of Spo12560.1 vs. UniProtKB/TrEMBL
Match: B9ST91_RICCO (Signalosome subunit, putative OS=Ricinus communis GN=RCOM_0364210 PE=4 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 6.700e-146
Identity = 264/318 (83.02%), Postives = 287/318 (90.25%), Query Frame = 1

		  
Query: 33  MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHP--TLSNGGEP--------CPPPRVY 92
           MA SSSSGLTFKLHPLVI+NISDH+TRV+SQ+  P  T +NGG            PPRVY
Sbjct: 1   MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPPVTTTTNGGSDGGGENTVSLAPPRVY 60

Query: 93  GCVIGVQKGRTVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDA 152
           GCVIGVQ+GRTVEIFNSFELLYD  T SLDRAFLEKKQELYKKVFP+FYILGWYSTG+DA
Sbjct: 61  GCVIGVQRGRTVEIFNSFELLYDPITHSLDRAFLEKKQELYKKVFPHFYILGWYSTGSDA 120

Query: 153 QESDMQIHKALMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYT 212
           +ESDM IHKALMDINESP+YVLL+PSIN AQKDLPV I+E+ELHVIDG+PQL FVRSSYT
Sbjct: 121 EESDMHIHKALMDINESPVYVLLNPSINPAQKDLPVIIYESELHVIDGIPQLIFVRSSYT 180

Query: 213 IETVEAERISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKG 272
           IETVEAERISVDHVAHLKP+DGGSAATQLAAHLTGIHSAIKMLNSR++VL  YL++MQKG
Sbjct: 181 IETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLHHYLAAMQKG 240

Query: 273 EIPCENSLLREVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDK 332
           EIPCENSLLR+VSSLLRRLPAIES KFQDDFLMEYNDT+L+TYLAM TNCSSTM+ELVDK
Sbjct: 241 EIPCENSLLRQVSSLLRRLPAIESEKFQDDFLMEYNDTLLITYLAMFTNCSSTMNELVDK 300

Query: 333 INIAYDRHSRRGGRTAFI 341
            N AYDRHSRRGGRTAFI
Sbjct: 301 FNTAYDRHSRRGGRTAFI 318

[Close]

BLAST of Spo12560.1 vs. ExPASy Swiss-Prot
Match: CSN6A_ARATH (COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana GN=CSN6A PE=1 SV=2)

HSP 1 Score: 492.7 bits (1267), Expect = 3.300e-138
Identity = 243/317 (76.66%), Postives = 282/317 (88.96%), Query Frame = 1

		  
Query: 33  MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTL-------SNGGEPC--PPPRVYG 92
           MA SSSSGLTFKLHPLVI+NISDH+TRV++QL  P         SN GE      PRVYG
Sbjct: 1   MAPSSSSGLTFKLHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYG 60

Query: 93  CVIGVQKGRTVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQ 152
           CVIGVQ+GRTVEIFNSFELLYD +T +LDR+FLEKKQELYKKVFP+FYILGWYSTG+DA+
Sbjct: 61  CVIGVQRGRTVEIFNSFELLYDPSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAE 120

Query: 153 ESDMQIHKALMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTI 212
           ESDM IHKALMDINESP+YVLL+P+INH QKDLPV+I+E+ELHVIDG+PQL F  +SYTI
Sbjct: 121 ESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIFAHTSYTI 180

Query: 213 ETVEAERISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGE 272
           ETVEAERISVDHVAHLKP+DGGSAATQLAAHLTGIHSAIKMLNSR++VL Q L++MQKG+
Sbjct: 181 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNLAAMQKGD 240

Query: 273 IPCENSLLREVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKI 332
             C+NS+LR+VSSLLRRLPA+ES +FQD+FLMEYND +L+TYLAM+TNCSS M+E+VDK 
Sbjct: 241 KSCDNSVLRQVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKF 300

Query: 333 NIAYDRHSRRGGRTAFI 341
           N AYDR++RRGGRTAF+
Sbjct: 301 NTAYDRNTRRGGRTAFM 317

[Close]

BLAST of Spo12560.1 vs. ExPASy Swiss-Prot
Match: CSN6B_ARATH (COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana GN=CSN6B PE=1 SV=2)

HSP 1 Score: 485.3 bits (1248), Expect = 5.300e-136
Identity = 238/317 (75.08%), Postives = 278/317 (87.70%), Query Frame = 1

		  
Query: 33  MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLS----NGGEPCPP-----PRVYG 92
           MA SSSSGLTFKLHPLV+LNISDHFTRV++QL  P  S    NG           PRVYG
Sbjct: 1   MAPSSSSGLTFKLHPLVMLNISDHFTRVKTQLNPPAASCATGNGSNNADAMLLQNPRVYG 60

Query: 93  CVIGVQKGRTVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQ 152
           CVIG+Q+GRTVEIFNSFEL++D A D+LDR+FLEKKQELYKKVFP+FY+LGWYSTG+DA 
Sbjct: 61  CVIGLQRGRTVEIFNSFELIFDPALDTLDRSFLEKKQELYKKVFPDFYVLGWYSTGSDAT 120

Query: 153 ESDMQIHKALMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTI 212
           ESDM IHKALMDINESP+YVLL+P+INHAQKDLPV+I+E+E HVIDG+PQ  FV +SYTI
Sbjct: 121 ESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIFVHTSYTI 180

Query: 213 ETVEAERISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGE 272
           ETVEAERISVDHVAHLKP+DGGSAATQLAAHLTGIHSAIKMLNSR++VL Q++ +MQKG+
Sbjct: 181 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHIVAMQKGD 240

Query: 273 IPCENSLLREVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKI 332
            PCENS+LR+VSSLLR LPA ES KF ++FLMEYND +L++YLAM+TNC+S M+E+VDK 
Sbjct: 241 KPCENSVLRQVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNMNEVVDKF 300

Query: 333 NIAYDRHSRRGGRTAFI 341
           N AYD+HSRRGGRTAF+
Sbjct: 301 NTAYDKHSRRGGRTAFM 317

[Close]

BLAST of Spo12560.1 vs. ExPASy Swiss-Prot
Match: CSN6_DICDI (COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum GN=csn6 PE=1 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 2.900e-65
Identity = 131/300 (43.67%), Postives = 200/300 (66.67%), Query Frame = 1

		  
Query: 36  SSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLSNGGEPCPPPRVYGCVIGVQKGRTVE 95
           ++SSGL   LHPLV++NISDHFTR + Q      SN  + C   RV G ++GVQ GR VE
Sbjct: 21  ANSSGLEVDLHPLVLINISDHFTRTKVQ------SNYQDNC---RVIGVILGVQNGRNVE 80

Query: 96  IFNSFELLYDSATDSL--DRAFLEKKQELYKKVFPNFYILGWYSTGTDAQESDMQIHKAL 155
           I NSFE++Y +    L  D  +L KK   Y+++FP + +LGWYSTG+   + D+ +HK +
Sbjct: 81  ICNSFEMVYATVDKQLVLDIEYLRKK---YEQLFPLYDLLGWYSTGSQVSKDDILLHKQI 140

Query: 156 MDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTIETVEAERISV 215
            + NESP+Y++L    +   KDLPV I+E+ELH+++  P   FV++ Y I+T EAERI V
Sbjct: 141 SEHNESPLYLMLDTD-SPKSKDLPVIIYESELHIVNDEPTTIFVKTPYKIQTGEAERIGV 200

Query: 216 DHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGEIPCENSLLRE 275
           +H+A + P+  GS  + L +HL  +H+AI MLN RVK L  YL ++++  +P E ++LR+
Sbjct: 201 NHIAKVTPS--GSEGSGLTSHLFTMHNAISMLNIRVKALSDYLQAVKEKRLPYEQNILRK 260

Query: 276 VSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKINIAYDRHSRR 334
            SSL  +LP I++  F+  +L EYND +LVTYLA +T  S+++++ +DK  ++ ++ S+R
Sbjct: 261 ASSLCNQLPTIDTHDFKKSYLQEYNDVLLVTYLASITKTSASLNDTIDKYLVSNEKQSKR 305

[Close]

BLAST of Spo12560.1 vs. ExPASy Swiss-Prot
Match: CSN6_PONAB (COP9 signalosome complex subunit 6 OS=Pongo abelii GN=COPS6 PE=2 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.900e-61
Identity = 124/299 (41.47%), Postives = 184/299 (61.54%), Query Frame = 1

		  
Query: 33  MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLSNGGEPCPPPRVYGCVIGVQKGR 92
           MA   +  ++  LHPLVILNISDH+ R+RSQ   P            +V G +IG Q+GR
Sbjct: 32  MASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPV-----------QVIGALIGKQEGR 91

Query: 93  TVEIFNSFELLYDSATDSL--DRAFLEKKQELYKKVFPNFYILGWYSTGTDAQESDMQIH 152
            +E+ NSFELL  +  + +  D+ +   K+E +K+VF     LGWY+TG     SD+ +H
Sbjct: 92  NIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVH 151

Query: 153 KALMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTIETVEAER 212
           K + +I ESP+++ L+P   H   DLPVS+FE+ + +I+G   + F   +YT+ T EAER
Sbjct: 152 KQVCEIIESPLFLKLNPMTKHT--DLPVSVFESVIDIINGEATMLFAELTYTLATEEAER 211

Query: 213 ISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGEIPCENSL 272
           I VDHVA +     G  +T +A HL   HSAIKML+SRVK++L+Y+ + + GE+P  + +
Sbjct: 212 IGVDHVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEI 271

Query: 273 LREVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKINIAYDR 330
           LRE  +L   LP + + KF+ DF  + ND  L+ YL  +T   +TM++ V+K N+ YDR
Sbjct: 272 LREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDR 316

[Close]

BLAST of Spo12560.1 vs. ExPASy Swiss-Prot
Match: CSN6_MOUSE (COP9 signalosome complex subunit 6 OS=Mus musculus GN=Cops6 PE=1 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 2.500e-61
Identity = 124/299 (41.47%), Postives = 184/299 (61.54%), Query Frame = 1

		  
Query: 33  MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLSNGGEPCPPPRVYGCVIGVQKGR 92
           MA   +  ++  LHPLVILNISDH+ R+RSQ   P            +V G +IG Q+GR
Sbjct: 28  MASGVTGSVSVALHPLVILNISDHWIRMRSQEGRPM-----------QVIGALIGKQEGR 87

Query: 93  TVEIFNSFELLYDSATDSL--DRAFLEKKQELYKKVFPNFYILGWYSTGTDAQESDMQIH 152
            +E+ NSFELL  +  + +  D+ +   K+E +K+VF     LGWY+TG     SD+ +H
Sbjct: 88  NIEVMNSFELLSHTVEEKIIIDKEYYYTKEEQFKQVFKELEFLGWYTTGGPPDPSDIHVH 147

Query: 153 KALMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTIETVEAER 212
           K + +I ESP+++ L+P   H   DLPVS+FE+ + +I+G   + F   +YT+ T EAER
Sbjct: 148 KQVCEIIESPLFLKLNPMTKHT--DLPVSVFESVIDIINGEATMLFAELTYTLATEEAER 207

Query: 213 ISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGEIPCENSL 272
           I VDHVA +     G  +T +A HL   HSAIKML+SRVK++L+Y+ + + GE+P  + +
Sbjct: 208 IGVDHVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVKLILEYVKASEAGEVPFNHEI 267

Query: 273 LREVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKINIAYDR 330
           LRE  +L   LP + + KF+ DF  + ND  L+ YL  +T   +TM++ V+K N+ YDR
Sbjct: 268 LREAYALCHCLPVLSTDKFKTDFYDQCNDVGLMAYLGTITKTCNTMNQFVNKFNVLYDR 312

[Close]

BLAST of Spo12560.1 vs. TAIR (Arabidopsis)
Match: AT5G56280.1 (COP9 signalosome subunit 6A)

HSP 1 Score: 492.7 bits (1267), Expect = 1.900e-139
Identity = 243/317 (76.66%), Postives = 282/317 (88.96%), Query Frame = 1

		  
Query: 33  MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTL-------SNGGEPC--PPPRVYG 92
           MA SSSSGLTFKLHPLVI+NISDH+TRV++QL  P         SN GE      PRVYG
Sbjct: 1   MAPSSSSGLTFKLHPLVIVNISDHYTRVKTQLNPPASICASGHGSNNGEAMFQQNPRVYG 60

Query: 93  CVIGVQKGRTVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQ 152
           CVIGVQ+GRTVEIFNSFELLYD +T +LDR+FLEKKQELYKKVFP+FYILGWYSTG+DA+
Sbjct: 61  CVIGVQRGRTVEIFNSFELLYDPSTQTLDRSFLEKKQELYKKVFPDFYILGWYSTGSDAE 120

Query: 153 ESDMQIHKALMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTI 212
           ESDM IHKALMDINESP+YVLL+P+INH QKDLPV+I+E+ELHVIDG+PQL F  +SYTI
Sbjct: 121 ESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIFAHTSYTI 180

Query: 213 ETVEAERISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGE 272
           ETVEAERISVDHVAHLKP+DGGSAATQLAAHLTGIHSAIKMLNSR++VL Q L++MQKG+
Sbjct: 181 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNLAAMQKGD 240

Query: 273 IPCENSLLREVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKI 332
             C+NS+LR+VSSLLRRLPA+ES +FQD+FLMEYND +L+TYLAM+TNCSS M+E+VDK 
Sbjct: 241 KSCDNSVLRQVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCSSNMNEMVDKF 300

Query: 333 NIAYDRHSRRGGRTAFI 341
           N AYDR++RRGGRTAF+
Sbjct: 301 NTAYDRNTRRGGRTAFM 317

[Close]

BLAST of Spo12560.1 vs. TAIR (Arabidopsis)
Match: AT4G26430.1 (COP9 signalosome subunit 6B)

HSP 1 Score: 485.3 bits (1248), Expect = 3.000e-137
Identity = 238/317 (75.08%), Postives = 278/317 (87.70%), Query Frame = 1

		  
Query: 33  MAESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLS----NGGEPCPP-----PRVYG 92
           MA SSSSGLTFKLHPLV+LNISDHFTRV++QL  P  S    NG           PRVYG
Sbjct: 1   MAPSSSSGLTFKLHPLVMLNISDHFTRVKTQLNPPAASCATGNGSNNADAMLLQNPRVYG 60

Query: 93  CVIGVQKGRTVEIFNSFELLYDSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQ 152
           CVIG+Q+GRTVEIFNSFEL++D A D+LDR+FLEKKQELYKKVFP+FY+LGWYSTG+DA 
Sbjct: 61  CVIGLQRGRTVEIFNSFELIFDPALDTLDRSFLEKKQELYKKVFPDFYVLGWYSTGSDAT 120

Query: 153 ESDMQIHKALMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTI 212
           ESDM IHKALMDINESP+YVLL+P+INHAQKDLPV+I+E+E HVIDG+PQ  FV +SYTI
Sbjct: 121 ESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIFVHTSYTI 180

Query: 213 ETVEAERISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGE 272
           ETVEAERISVDHVAHLKP+DGGSAATQLAAHLTGIHSAIKMLNSR++VL Q++ +MQKG+
Sbjct: 181 ETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHIVAMQKGD 240

Query: 273 IPCENSLLREVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKI 332
            PCENS+LR+VSSLLR LPA ES KF ++FLMEYND +L++YLAM+TNC+S M+E+VDK 
Sbjct: 241 KPCENSVLRQVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCTSNMNEVVDKF 300

Query: 333 NIAYDRHSRRGGRTAFI 341
           N AYD+HSRRGGRTAF+
Sbjct: 301 NTAYDKHSRRGGRTAFM 317

[Close]

BLAST of Spo12560.1 vs. TAIR (Arabidopsis)
Match: AT3G11270.1 (Mov34/MPN/PAD-1 family protein)

HSP 1 Score: 102.4 bits (254), Expect = 5.500e-22
Identity = 71/286 (24.83%), Postives = 135/286 (47.20%), Query Frame = 1

		  
Query: 45  LHPLVILNISDHFTRVRSQLQHPTLSNGGEPCPPPRVYGCVIGVQKGRTVEIFNSFELLY 104
           +HPLV+L+I DH+ RV                   RV G ++G     TV++ NS+ + +
Sbjct: 19  VHPLVLLSIVDHYNRVAKDTSK-------------RVVGVLLGSSSRGTVDVTNSYAVPF 78

Query: 105 -----DSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQESDMQIHKALMDINES 164
                D++   LD  + E    ++K++    +I+GWYSTG   +E+D+ +H        +
Sbjct: 79  EEDDKDTSIWFLDHNYHESMFHMFKRINAKEHIVGWYSTGPKLRENDLDVHALFNGYVPN 138

Query: 165 PIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLT---FVRSSYTIETVEAERISVDHV 224
           P+ V++   +   +  +P   +     V +   Q +   FV     I   E E I V+H+
Sbjct: 139 PVLVII--DVQPKELGIPTKAYYAVEEVKENATQKSQQVFVHVPTEIAAHEVEEIGVEHL 198

Query: 225 AH-LKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGEIPCENSLLREVS 284
              +K     + AT++ A L    +A+K L++R++ +  YL  + +G++P  + +L  + 
Sbjct: 199 LRDVKDTTISTLATEVTAKL----TALKGLDARLREIRTYLDLVIEGKLPLNHEILYHLQ 258

Query: 285 SLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVD 322
            +   LP +   +    F ++ ND +LV YL+ L      +  L++
Sbjct: 259 DVFNLLPNLNVNELVKAFAVKTNDMMLVIYLSSLIRSVIALHSLIN 285

[Close]

BLAST of Spo12560.1 vs. TAIR (Arabidopsis)
Match: AT5G05780.1 (RP non-ATPase subunit 8A)

HSP 1 Score: 100.9 bits (250), Expect = 1.600e-21
Identity = 70/286 (24.48%), Postives = 134/286 (46.85%), Query Frame = 1

		  
Query: 45  LHPLVILNISDHFTRVRSQLQHPTLSNGGEPCPPPRVYGCVIGVQKGRTVEIFNSFELLY 104
           +HPLV+L+I DH+ RV                   RV G ++G      V++ NS+ + +
Sbjct: 19  VHPLVLLSIVDHYNRVAKDSSK-------------RVVGVLLGSSSRGVVDVTNSYAVPF 78

Query: 105 -----DSATDSLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQESDMQIHKALMDINES 164
                D +   LD  + E    ++K++    +++GWYSTG   +E+D+ +H        +
Sbjct: 79  EEDDKDPSIWFLDHNYHESMFHMFKRINAKEHVVGWYSTGPKLRENDLDVHALFNGYVPN 138

Query: 165 PIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLT---FVRSSYTIETVEAERISVDHV 224
           P+ V++   +   +  +P   +     V +   Q +   FV  S  I   E E I V+H+
Sbjct: 139 PVLVII--DVQPKELGIPTKAYYAVEEVKENATQKSQKVFVHVSTEIAAHEVEEIGVEHL 198

Query: 225 AH-LKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGEIPCENSLLREVS 284
              +K     + AT++ A L    +A+K L++R++ +  YL  + +G++P  + +L  + 
Sbjct: 199 LRDVKDTTISTLATEVTAKL----TALKGLDARLREIRSYLDLVIEGKLPLNHEILYHLQ 258

Query: 285 SLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVD 322
            +   LP +   +    F ++ ND +LV YL+ L      +  L++
Sbjct: 259 DVFNLLPNLNVNELVKAFSVKTNDMMLVIYLSSLIRSVIALHNLIN 285

[Close]

BLAST of Spo12560.1 vs. TAIR (Arabidopsis)
Match: AT2G39990.1 (eukaryotic translation initiation factor 2)

HSP 1 Score: 80.1 bits (196), Expect = 2.900e-15
Identity = 70/296 (23.65%), Postives = 131/296 (44.26%), Query Frame = 1

		  
Query: 34  AESSSSGLTFKLHPLVILNISDHFTRVRSQLQHPTLSNGGEPCPPPRVYGCVIG-VQKGR 93
           A +++S LT ++HPLVI N+ D F R               P    RV G ++G +    
Sbjct: 19  ASATTSVLTARIHPLVIFNVCDCFVR--------------RPDSAERVIGTLLGSILPDG 78

Query: 94  TVEIFNSFELLYDSATD--SLDRAFLEKKQELYKKVFPNFYILGWYSTGTDAQESDMQIH 153
           TV+I NS+ + ++ ++D  ++D  +       + KV     I+GWYSTG         IH
Sbjct: 79  TVDIRNSYAVPHNESSDQVAVDIDYHHNMLASHLKVNSKETIVGWYSTGAGVNGGSSLIH 138

Query: 154 KALMDINESPIYVLLHPSINHAQKDLPVSIFENELHVIDGLPQLTFVRSSYTIETVEAER 213
                   +PI++ +     + +  +   +  N L + D      F      +  V+AER
Sbjct: 139 DFYAREVPNPIHLTVDTGFTNGEGTIKAFVSSN-LSLGDRQLVAHFQEIPVDLRMVDAER 198

Query: 214 ISVDHVAHLKPADGGSAATQLAAHLTGIHSAIKMLNSRVKVLLQYLSSMQKGEIPCENSL 273
           +  D +         ++  +L   L G+   ++ L + +  + +Y+ S+  G+I  +N++
Sbjct: 199 VGFDVLK-------ATSVDKLPNDLEGMELTMERLLTLINDVYKYVDSVVGGQIAPDNNI 258

Query: 274 LREVSSLLRRLPAIESGKFQDDFLMEYNDTILVTYLAMLTNCSSTMSELVDKINIA 327
            R ++  +  LP +    F +       D +L+ YL+ +T    T   L +K+N A
Sbjct: 259 GRFIADAVASLPKLPPQVFDNLVNDSLQDQLLLLYLSSITR---TQLSLAEKLNTA 289

The following BLAST results are available for this feature:

BLAST of Spo12560.1 vs. NCBI nr
BLAST of Spo12560.1 vs. UniProtKB/TrEMBL
BLAST of Spo12560.1 vs. ExPASy Swiss-Prot
BLAST of Spo12560.1 vs. TAIR (Arabidopsis)

BLAST of Spo12560.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902221649\|gb\|KNA18960.1\|	7.1e-173	100.	hypothetical protein SOVF_0653...	[more]
gi\|731349970\|ref\|XP_010686267.1\|	6.9e-160	92.2	PREDICTED: COP9 signalosome co...	[more]
gi\|225463552\|ref\|XP_002267156.1\|	2.5e-149	84.2	PREDICTED: COP9 signalosome co...	[more]
gi\|1009107791\|ref\|XP_015881485.1\|	3.3e-146	80.9	PREDICTED: COP9 signalosome co...	[more]
gi\|1012179800\|ref\|XP_015967866.1\|	4.3e-146	84.7	PREDICTED: COP9 signalosome co...	[more]

BLAST of Spo12560.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9RHK5_SPIOL	4.9e-173	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8ENA5_BETVU	4.8e-160	92.2	Uncharacterized protein OS=Bet...	[more]
D7UAV8_VITVI	1.7e-149	84.2	Putative uncharacterized prote...	[more]
A0A067K375_JATCU	3.9e-146	82.5	Uncharacterized protein OS=Jat...	[more]
B9ST91_RICCO	6.7e-146	83.0	Signalosome subunit, putative ...	[more]

BLAST of Spo12560.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
CSN6A_ARATH	3.3e-138	76.6	COP9 signalosome complex subun...	[more]
CSN6B_ARATH	5.3e-136	75.0	COP9 signalosome complex subun...	[more]
CSN6_DICDI	2.9e-65	43.6	COP9 signalosome complex subun...	[more]
CSN6_PONAB	1.9e-61	41.4	COP9 signalosome complex subun...	[more]
CSN6_MOUSE	2.5e-61	41.4	COP9 signalosome complex subun...	[more]

BLAST of Spo12560.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
AT5G56280.1	1.9e-139	76.6	COP9 signalosome subunit 6A	[more]
AT4G26430.1	3.0e-137	75.0	COP9 signalosome subunit 6B	[more]
AT3G11270.1	5.5e-22	24.8	Mov34/MPN/PAD-1 family protein	[more]
AT5G05780.1	1.6e-21	24.4	RP non-ATPase subunit 8A	[more]
AT2G39990.1	2.9e-15	23.6	eukaryotic translation initiat...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	PFAM	PF01398	JAB	coord: 39..159 score: 3.0
IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	SMART	SM00232	pad1_6	coord: 42..186 score: 1.
IPR024969	Rpn11/EIF3F, C-terminal	PFAM	PF13012	MitMem_reg	coord: 207..321 score: 2.3
None	No IPR available	PANTHER	PTHR10540	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED	coord: 19..336 score: 2.0E
None	No IPR available	PANTHER	PTHR10540:SF8	COP9 SIGNALOSOME COMPLEX SUBUNIT 6	coord: 19..336 score: 2.0E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding