Spo12613.1 (mRNA)

Overview
NameSpo12613.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 94883642 .. 94886610 (+)
Sequence length1081
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCTGTTTCTGGTGGTCCTGCGAATTTCTTTACCTAGAGCATTTCTTGTTGCAGAGAAGCGCACGACGATGGAAGCGCTGGAAGGCCGACCAGACTGATGGTGGCCACGGCGGAGATCGGCAGACGGTTGAGCAACAGGAGGAGAGAGAAAGTGGCGGAGTTTCTATTGAGAAAGTGAAGCAGGTTTTGCGAAGAGTTTGAGGTTTTGGCCAAGGATCGAGGGTATAACGGACTTTTCAAAAGGGGACACGAAAAGTTATTTTACCAAAAAGACCTCAGCTGTTCCTTTATATAATAGAGATTTTGAATTTTTGATAGAAATATTGCAACGGTATTTTTTCAATTACTTAAATAAAATAAATTAATATTAAAAAATATTATAACATACGGAGAAAGTTACCAGAGTTTTTGTTTACTGAAAAAAAACGTTATTGAATTTTTTCTTATAGAGTTAATTTATTTGGGTTCCCTCTTCCAAACCTTATGTTTCACATTTCACCCCAAACCCTTCTTCATGTTCTTCGATCTTCTTTGTTCTTCTGTTTCATCTGCTTCGTTGTTCTTCGTTCTTCTTCTCTTTAATCTTCTTCGTTCTTGTGAATCCCCTTCATCGTCGTTTCCTGAAGCAAGGCGAATTTGAATTGGAAATTGGGTCTTTGAATTGAAGTTAAGGAGAAATTGGCAAATTGCGTTTCTGAATTGTCGATAAGGACAAGGTTAAATGGTATATATTTCATCGAATTTGGTCTTAAATTTCAAATTACATTGTTTAATTAACTGGTTACAATTGCATTTCTTGTGTGATTTTGAGGCCTAAATTAGGGTTCTTAATTAGGGAATTATGTTGATTTTTATTCATGTGCGTATGATTTATTTACAAATTTGTTTTGATTCCACAATTTCAATCAATTGTGTGAACGATCGATGGGTTATTTTGGATGATTTTATTCTGAATTTTGGTACTTTTAGTTGTTCTTTAATCTCCCCTTAGTTCCTGAACTGGTTCTTCCTATGAGTTCTTGTTGTATGTACAACAAAATACTTGCAGCTGCATCTATTTCTCTTATAAATTGCAAGTTTGTTTCCTATGAGTTCTTCAAATTCGTTTTTTTACCTTTTTAGTCACAAACCTGATTATTAATGCCACGAGCAAACACCTCCACATATGTTGCTGCTAGATTGTTTTTGGGTGTTTGGGTGTTGGGGGTTCCTGCCTGCTGGTTTCATTCTGTCCAGGCGTTGGGTGATGTTTCTTTGTTGATCTGTTGTTGCTGGTATTTTTTGATGGAGAGGAAGGGTAGTGTAGATTCCCTATTTTACTTCTTTATGATCAGTAGTATAAAAAATTATATTAGTAACCCTTATTAGTTATGAGCTCAATTTACACCAGTTATTAATAATGCATTAGTAACCGATGCCATCTTACCGCTTTAGAAATAACATGTTGAAAGTGAGTCTGACTTTCTGTACTCGGTAATCTCTGTAGTTTAGTGATGTTGGTGTTTGTTTACTGTATGCAATGTTGCTCTTCTGGTGTTTGCCTCTGCTTCTTCTAGCTTCTGGTTTCTGCAGGGTGCTGCTTTGGGGGAAGGCCTGTTGGTTTTGCTGTTGTCTATGCAGGCTGGCAGCTTCTTTGCTCAAGCTGGGTTCTGCTGCTTGGTTGTTGCGCTTCTTTGCACAGGGTGGGTGTTCCTTTGCTACTTCTGCTTCAGTTCTGTTGCACGTGTTGTTCTTTGTTTCTTTTATTTGTTTTACAGGCTGTTTTGCCTTTGTTTTTAGTGTTTTCTAGTGTATCTTTGTTTGGTTCTTCCTGTACTAGTGAGTCTGACCAAGTACTAGTAACTGATATAGATAGAACCCGCTAGAAATGCCTGGTCAAACTATGTTGACCTTATTTTTACTAAAGGAAAATAAGTATGAAGGTTGTAAATCGAGTCAAATTTATTTCAATATTTTTAGGTCTTATGAATAATCCCTTTTTTTACCCCCAAAAACCAACCCTAATTTCACTTCACTCACCAGAAGATCCATTATTTTTCTTTCAATTCTTCGTAATATAAGGTTAGTTTTTTAATTGCTTATTAATTATTCAAAAATTGAGTTTCCTTTCAGATATATCGAAAGTTAGGGTTTTCACTGGATTTTCCGGGCATGAAAAACTTAGATCTATTCAAATCATGATTTGCTTCAGGAACAGGAACTAGGAAAGACTTATCAATTTCTTCGCGCTCATCTTTCGATTCAACTACATCAGGAAGTTTTGCGAACTTGAAGCTCGATGCAGGTTCGATCATCATCTAACTTTAAGTCTTAATTTCATAAATTCACAGTTCTTTATTTATGTTAAATTCGTCCTGAAGGAGGAACTTGAAGAGAATTGGTGAATGAACAAGCGTATGTGAAACCTAACCTCAAACTCACTGTAATTTCTCCCTCAATAATGCTAACTAAGTACTATATATGTTTCTTGGTGAAGTGACTTATTTGATGCCCGCTAGATTTACCATCTACATTTAGTTGCTTGTAATTTCAGGTTTCAGTTGTTACTGCTCAATCTAGAATGCAAGGTTCAGGGGCAACTACTGTTGATTTGATGATGAAGGCAATGTCTTAGTGAGTAGCTGCCTTTTTTTCTTCGGGTTTCCGTTTCATTTGTTCTTCCTGTTGATATATTTTATGTGAAGCTTTTTATGTTTCTTAGAAGCTGAGTATGGGGCAGGGTTCCTTTTATCCCATAGAATGTCCCTTAGAAGGTTGGATGTTTAATGTAAGCCTAGTAAGAAGTTGTATTGGATAAAGTAGTTTATTTGTCTGCTAGTTATCAATAAAATGAAAATGCTACAATTTCTCCCTTCTGTAATGGAGATGAAATGGCCTTGCCAATGGTGTACAGAAGGAACCTCTTGTTACTTGGGTTCATAAAAATTTCAGGTTGGACTACCTATAACTACTTGAGTCCTTTGTCG

mRNA sequence

ATGCCCTGTTTCTGGTGGTCCTGCGAATTTCTTTACCTAGAGCATTTCTTGTTGCAGAGAAGCGCACGACGATGGAAGCGCTGGAAGGCCGACCAGACTGATGGTGGCCACGGCGGAGATCGGCAGACGGTTGAGCAACAGGAGGAGAGAGAAAGTGGCGGAGTTTCTATTGAGAAAGTGAAGCAGTTTAGTGATGTTGGTGTTTGTTTACTGTATGCAATGTTGCTCTTCTGGTGTTTGCCTCTGCTTCTTCTAGCTTCTGGTTTCTGCAGGGTGCTGCTTTGGGGGAAGGCCTGTTGGTTTTGCTGTTGTCTATGCAGGCTGGCAGCTTCTTTGCTCAAGCTGGGTTCTGCTGCTTGGTTGTTGCGCTTCTTTGCACAGGGAACAGGAACTAGGAAAGACTTATCAATTTCTTCGCGCTCATCTTTCGATTCAACTACATCAGGAAGTTTTGCGAACTTGAAGCTCGATGCAGGAGGAACTTGAAGAGAATTGGTGAATGAACAAGCGTATGTGAAACCTAACCTCAAACTCACTGTAATTTCTCCCTCAATAATGCTAACTAAGTACTATATATGTTTCTTGGTGAAGTGACTTATTTGATGCCCGCTAGATTTACCATCTACATTTAGTTGCTTGTAATTTCAGGTTTCAGTTGTTACTGCTCAATCTAGAATGCAAGGTTCAGGGGCAACTACTGTTGATTTGATGATGAAGGCAATGTCTTAGTGAGTAGCTGCCTTTTTTTCTTCGGGTTTCCGTTTCATTTGTTCTTCCTGTTGATATATTTTATGTGAAGCTTTTTATGTTTCTTAGAAGCTGAGTATGGGGCAGGGTTCCTTTTATCCCATAGAATGTCCCTTAGAAGGTTGGATGTTTAATGTAAGCCTAGTAAGAAGTTGTATTGGATAAAGTAGTTTATTTGTCTGCTAGTTATCAATAAAATGAAAATGCTACAATTTCTCCCTTCTGTAATGGAGATGAAATGGCCTTGCCAATGGTGTACAGAAGGAACCTCTTGTTACTTGGGTTCATAAAAATTTCAGGTTGGACTACCTATAACTACTTGAGTCCTTTGTCG

Coding sequence (CDS)

ATGCCCTGTTTCTGGTGGTCCTGCGAATTTCTTTACCTAGAGCATTTCTTGTTGCAGAGAAGCGCACGACGATGGAAGCGCTGGAAGGCCGACCAGACTGATGGTGGCCACGGCGGAGATCGGCAGACGGTTGAGCAACAGGAGGAGAGAGAAAGTGGCGGAGTTTCTATTGAGAAAGTGAAGCAGTTTAGTGATGTTGGTGTTTGTTTACTGTATGCAATGTTGCTCTTCTGGTGTTTGCCTCTGCTTCTTCTAGCTTCTGGTTTCTGCAGGGTGCTGCTTTGGGGGAAGGCCTGTTGGTTTTGCTGTTGTCTATGCAGGCTGGCAGCTTCTTTGCTCAAGCTGGGTTCTGCTGCTTGGTTGTTGCGCTTCTTTGCACAGGGAACAGGAACTAGGAAAGACTTATCAATTTCTTCGCGCTCATCTTTCGATTCAACTACATCAGGAAGTTTTGCGAACTTGAAGCTCGATGCAGGAGGAACTTGA

Protein sequence

MPCFWWSCEFLYLEHFLLQRSARRWKRWKADQTDGGHGGDRQTVEQQEERESGGVSIEKVKQFSDVGVCLLYAMLLFWCLPLLLLASGFCRVLLWGKACWFCCCLCRLAASLLKLGSAAWLLRFFAQGTGTRKDLSISSRSSFDSTTSGSFANLKLDAGGT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo12613Spo12613gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo12613.1Spo12613.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12613.1.exon.1Spo12613.1.exon.1exon
Spo12613.1.exon.2Spo12613.1.exon.2exon
Spo12613.1.exon.3Spo12613.1.exon.3exon
Spo12613.1.exon.4Spo12613.1.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12613.1.CDS.1Spo12613.1.CDS.1CDS
Spo12613.1.CDS.2Spo12613.1.CDS.2CDS
Spo12613.1.CDS.3Spo12613.1.CDS.3CDS
Spo12613.1.CDS.4Spo12613.1.CDS.4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12613.1.utr3p.1Spo12613.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo12613.1 vs. NCBI nr
Match: gi|902147907|gb|KNA05198.1| (hypothetical protein SOVF_192580, partial [Spinacia oleracea])

HSP 1 Score: 195.7 bits (496), Expect = 6.400e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

		  

Query: 63  FSDVGVCLLYAMLLFWCLPLLLLASGFCRVLLWGKACWFCCCLCRLAASLLKLGSAAWLL 122
           FSDVGVCLLYAMLLFWCLPLLLLASGFCRVLLWGKACWFCCCLCRLAASLLKLGSAAWLL
Sbjct: 1   FSDVGVCLLYAMLLFWCLPLLLLASGFCRVLLWGKACWFCCCLCRLAASLLKLGSAAWLL 60

Query: 123 RFFAQGTGTRKDLSISSRSSFDSTTSGSFANLKLDAGGT 162
           RFFAQGTGTRKDLSISSRSSFDSTTSGSFANLKLDAGGT
Sbjct: 61  RFFAQGTGTRKDLSISSRSSFDSTTSGSFANLKLDAGGT 99
[Close]
BLAST of Spo12613.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEV7_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_192580 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 4.400e-47
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 

		  

Query: 63  FSDVGVCLLYAMLLFWCLPLLLLASGFCRVLLWGKACWFCCCLCRLAASLLKLGSAAWLL 122
           FSDVGVCLLYAMLLFWCLPLLLLASGFCRVLLWGKACWFCCCLCRLAASLLKLGSAAWLL
Sbjct: 1   FSDVGVCLLYAMLLFWCLPLLLLASGFCRVLLWGKACWFCCCLCRLAASLLKLGSAAWLL 60

Query: 123 RFFAQGTGTRKDLSISSRSSFDSTTSGSFANLKLDAGGT 162
           RFFAQGTGTRKDLSISSRSSFDSTTSGSFANLKLDAGGT
Sbjct: 61  RFFAQGTGTRKDLSISSRSSFDSTTSGSFANLKLDAGGT 99
The following BLAST results are available for this feature:
BLAST of Spo12613.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902147907|gb|KNA05198.1|6.4e-47100.hypothetical protein SOVF_1925... [more]
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BLAST of Spo12613.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QEV7_SPIOL4.4e-47100.Uncharacterized protein (Fragm... [more]
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BLAST of Spo12613.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12613.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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