Spo12681.1 (mRNA) | SpinachBase

Overview


Name	Spo12681.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	60S ribosomal protein L13
Location	SpoScf_17356 : 330 .. 1192 (+)
Sequence length	381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTGCTGGTATCCCAAAGAAGCTTGCTCCCACTATTGGAATTGCAGTTGACCATCGACGCAGGAATCGCTCCCTAGAAGGTCTGCAAACTAATGTGCAGAGGCTTAAGACCTACAAGGCTAAACTTGTTGTCTTCCCAAGGCACGCCAGGAAGTTCAAGGTAAATTTAAAAATTTCTACCTATCTTATACCATCTAGTCTCCATTTAGTAGGGTGTGAAACATTTTTATTGAAATCGATTTTTCCCTCTTCAACCATTTTTCCTTTTTTGGTTTTGACAAGCTATGAAAAATAATTTTCCATAACTCCCTCAAAGGTTGAAAAACTTTCCATTTGAAAGGGGGTGAAACCATTGTTCCTCCTTACCTTCTCTCCCTTCTTCCCCTCACCATCTTCTCCCATTTTCTTTTAAAGAACCGAAAAAGGTAAACTAGTCTTGAAATTCTCTTTCCCTTGGAAAATCTACCTTTCTTTCTTACCTCCCTCTCCTTTCTTCCCTCCAATTGTCACCATCTTCTGCCATTTTCTTTTAAAGAACCAAACATTTTGCACTGAAAACATTCACGCCAAGCCAAACAGAGCCCTAATGTTTTTCAGTTCGGTAAATCCGCATCTCATTTGTGGAACTTGATTGTTACACAGGCTGGTGATTCAACCCCAGAGGAACTCGCAAATGCTACACAGGTCCAAGGTGAGTTCTTGCCAATTGAGAATGTCAAGGTACCGATGGATATTGTGAGCGTTACAGCCGACATGAAGGCTGTCAATGCCTATGCCAAGCTTCGTCTTGAGAGGACAAACAAACGCCACCAAGGTATTAGACTGAAGAGGGCTGCCGAGGCCGAGAAGGAAGAGAAGAAGTAA

mRNA sequence

GGTGCTGGTATCCCAAAGAAGCTTGCTCCCACTATTGGAATTGCAGTTGACCATCGACGCAGGAATCGCTCCCTAGAAGGTCTGCAAACTAATGTGCAGAGGCTTAAGACCTACAAGGCTAAACTTGTTGTCTTCCCAAGGCACGCCAGGAAGTTCAAGGCTGGTGATTCAACCCCAGAGGAACTCGCAAATGCTACACAGGTCCAAGGTGAGTTCTTGCCAATTGAGAATGTCAAGGTACCGATGGATATTGTGAGCGTTACAGCCGACATGAAGGCTGTCAATGCCTATGCCAAGCTTCGTCTTGAGAGGACAAACAAACGCCACCAAGGTATTAGACTGAAGAGGGCTGCCGAGGCCGAGAAGGAAGAGAAGAAGTAA

Coding sequence (CDS)

GGTGCTGGTATCCCAAAGAAGCTTGCTCCCACTATTGGAATTGCAGTTGACCATCGACGCAGGAATCGCTCCCTAGAAGGTCTGCAAACTAATGTGCAGAGGCTTAAGACCTACAAGGCTAAACTTGTTGTCTTCCCAAGGCACGCCAGGAAGTTCAAGGCTGGTGATTCAACCCCAGAGGAACTCGCAAATGCTACACAGGTCCAAGGTGAGTTCTTGCCAATTGAGAATGTCAAGGTACCGATGGATATTGTGAGCGTTACAGCCGACATGAAGGCTGTCAATGCCTATGCCAAGCTTCGTCTTGAGAGGACAAACAAACGCCACCAAGGTATTAGACTGAAGAGGGCTGCCGAGGCCGAGAAGGAAGAGAAGAAGTAA

Protein sequence

GAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEELANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAEKEEKK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo12681	Spo12681	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo12681.1	Spo12681.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12681.1.exon.1	Spo12681.1.exon.1	exon
Spo12681.1.exon.2	Spo12681.1.exon.2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12681.1.CDS.1	Spo12681.1.CDS.1	CDS
Spo12681.1.CDS.2	Spo12681.1.CDS.2	CDS

Homology

[Close]

BLAST of Spo12681.1 vs. NCBI nr
Match: gi|902231534|gb|KNA22308.1| (hypothetical protein SOVF_035480 [Spinacia oleracea])

HSP 1 Score: 240.4 bits (612), Expect = 1.800e-60
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1


		  
Query: 1   GAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPE 60
           GAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPE
Sbjct: 82  GAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPE 141

Query: 61  ELANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEA 120
           ELANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEA
Sbjct: 142 ELANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEA 201

Query: 121 EKEEKK 127
           EKEEKK
Sbjct: 202 EKEEKK 207

[Close]

BLAST of Spo12681.1 vs. NCBI nr
Match: gi|731332983|ref|XP_010677493.1| (PREDICTED: 60S ribosomal protein L13-1-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 216.1 bits (549), Expect = 3.600e-53
Identity = 110/125 (88.00%), Postives = 119/125 (95.20%), Query Frame = 1


		  
Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGIAVDHRRRN SLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE
Sbjct: 83  AGIPKKLAPTIGIAVDHRRRNSSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 142

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQGEFLPI++ K P++++ VT DMK+ NAY+KLRLERTNKRHQGIRLKRAAEAE
Sbjct: 143 LANATQVQGEFLPIKSEKAPVEVIKVTEDMKSFNAYSKLRLERTNKRHQGIRLKRAAEAE 202

Query: 122 KEEKK 127
           KE+KK
Sbjct: 203 KEDKK 207

[Close]

BLAST of Spo12681.1 vs. NCBI nr
Match: gi|567138975|ref|XP_006394649.1| (hypothetical protein EUTSA_v10004920mg [Eutrema salsugineum])

HSP 1 Score: 195.7 bits (496), Expect = 5.000e-47
Identity = 100/125 (80.00%), Postives = 112/125 (89.60%), Query Frame = 1


		  
Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           A IPKKLAPTIGI+VDHRR+NRSLEGLQ+NVQRLKTYKAKLVVFPR +RK KAGDSTPEE
Sbjct: 82  ACIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRKVKAGDSTPEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG+++PI   K PMD+V VTADMKA  AY K+RLERTN+RH G+R KRAA+AE
Sbjct: 142 LANATQVQGDYMPIAREKAPMDLVKVTADMKAFKAYDKIRLERTNQRHAGVRAKRAADAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206

[Close]

BLAST of Spo12681.1 vs. NCBI nr
Match: gi|727444088|ref|XP_010503548.1| (PREDICTED: 60S ribosomal protein L13-1 [Camelina sativa])

HSP 1 Score: 194.1 bits (492), Expect = 1.400e-46
Identity = 100/125 (80.00%), Postives = 111/125 (88.80%), Query Frame = 1


		  
Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI+VDHRR+NRSLEGLQTNVQRLKTYKAKLV+FPR ARK KAGDSTPEE
Sbjct: 82  AGIPKKLAPTIGISVDHRRKNRSLEGLQTNVQRLKTYKAKLVIFPRRARKVKAGDSTPEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG+++PI   K  M++V +T+DMK+  AY KLRLERTNKRH G RLKRA EAE
Sbjct: 142 LANATQVQGDYMPIVREKPTMELVKLTSDMKSFKAYDKLRLERTNKRHAGARLKRAQEAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206

[Close]

BLAST of Spo12681.1 vs. NCBI nr
Match: gi|593790206|ref|XP_007158142.1| (hypothetical protein PHAVU_002G127900g [Phaseolus vulgaris])

HSP 1 Score: 193.4 bits (490), Expect = 2.500e-46
Identity = 100/125 (80.00%), Postives = 110/125 (88.00%), Query Frame = 1


		  
Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI+VDHRRRNRSLE +Q+NVQRLKTYKAKLVVFPR ARK KAGDSTPEE
Sbjct: 83  AGIPKKLAPTIGISVDHRRRNRSLESMQSNVQRLKTYKAKLVVFPRRARKVKAGDSTPEE 142

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG +LPI   K P+++V +T DMKA  AY KLRLERTNKRH G RLK+AAEAE
Sbjct: 143 LANATQVQGSYLPIAREKAPVELVKITDDMKAFKAYYKLRLERTNKRHFGARLKKAAEAE 202

Query: 122 KEEKK 127
           KE+KK
Sbjct: 203 KEDKK 207

[Close]

BLAST of Spo12681.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RS61_SPIOL (60S ribosomal protein L13 OS=Spinacia oleracea GN=SOVF_035480 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.200e-60
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 1


		  
Query: 1   GAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPE 60
           GAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPE
Sbjct: 82  GAGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPE 141

Query: 61  ELANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEA 120
           ELANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEA
Sbjct: 142 ELANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEA 201

Query: 121 EKEEKK 127
           EKEEKK
Sbjct: 202 EKEEKK 207

[Close]

BLAST of Spo12681.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F6B0_BETVU (60S ribosomal protein L13 OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g108050 PE=3 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.500e-53
Identity = 110/125 (88.00%), Postives = 119/125 (95.20%), Query Frame = 1


		  
Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGIAVDHRRRN SLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE
Sbjct: 83  AGIPKKLAPTIGIAVDHRRRNSSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 142

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQGEFLPI++ K P++++ VT DMK+ NAY+KLRLERTNKRHQGIRLKRAAEAE
Sbjct: 143 LANATQVQGEFLPIKSEKAPVEVIKVTEDMKSFNAYSKLRLERTNKRHQGIRLKRAAEAE 202

Query: 122 KEEKK 127
           KE+KK
Sbjct: 203 KEDKK 207

[Close]

BLAST of Spo12681.1 vs. UniProtKB/TrEMBL
Match: V4MKI2_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10004920mg PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 3.500e-47
Identity = 100/125 (80.00%), Postives = 112/125 (89.60%), Query Frame = 1


		  
Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           A IPKKLAPTIGI+VDHRR+NRSLEGLQ+NVQRLKTYKAKLVVFPR +RK KAGDSTPEE
Sbjct: 82  ACIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRKVKAGDSTPEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG+++PI   K PMD+V VTADMKA  AY K+RLERTN+RH G+R KRAA+AE
Sbjct: 142 LANATQVQGDYMPIAREKAPMDLVKVTADMKAFKAYDKIRLERTNQRHAGVRAKRAADAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206

[Close]

BLAST of Spo12681.1 vs. UniProtKB/TrEMBL
Match: V7CMM3_PHAVU (60S ribosomal protein L13 OS=Phaseolus vulgaris GN=PHAVU_002G127900g PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.700e-46
Identity = 100/125 (80.00%), Postives = 110/125 (88.00%), Query Frame = 1


		  
Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI+VDHRRRNRSLE +Q+NVQRLKTYKAKLVVFPR ARK KAGDSTPEE
Sbjct: 83  AGIPKKLAPTIGISVDHRRRNRSLESMQSNVQRLKTYKAKLVVFPRRARKVKAGDSTPEE 142

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG +LPI   K P+++V +T DMKA  AY KLRLERTNKRH G RLK+AAEAE
Sbjct: 143 LANATQVQGSYLPIAREKAPVELVKITDDMKAFKAYYKLRLERTNKRHFGARLKKAAEAE 202

Query: 122 KEEKK 127
           KE+KK
Sbjct: 203 KEDKK 207

[Close]

BLAST of Spo12681.1 vs. UniProtKB/TrEMBL
Match: D7M2E3_ARALL (60S ribosomal protein L13 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489251 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.900e-46
Identity = 99/125 (79.20%), Postives = 111/125 (88.80%), Query Frame = 1


		  
Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI+VDHRR+NRSLEGLQ+NVQRLKTYKAKLVVFPR +RK KAGDSTPEE
Sbjct: 82  AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRKVKAGDSTPEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG+++PI + K  M++V +TADMKA  AY K+RLERTN RH G R KRAAEAE
Sbjct: 142 LANATQVQGDYMPIASEKAAMELVKLTADMKAFKAYDKIRLERTNARHAGARAKRAAEAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206

[Close]

BLAST of Spo12681.1 vs. ExPASy Swiss-Prot
Match: RL133_ARATH (60S ribosomal protein L13-3 OS=Arabidopsis thaliana GN=RPL13D PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.400e-48
Identity = 98/125 (78.40%), Postives = 112/125 (89.60%), Query Frame = 1


		  
Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI+VDHRR+NRSLEGLQ+NVQRLKTYKAKLVVFPR +R+ KAGDSTPEE
Sbjct: 82  AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG+++PI +VK  M++V +TAD+KA  AY K+RLERTN RH G R KRAAEAE
Sbjct: 142 LANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGARAKRAAEAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206

[Close]

BLAST of Spo12681.1 vs. ExPASy Swiss-Prot
Match: RL131_ARATH (60S ribosomal protein L13-1 OS=Arabidopsis thaliana GN=RPL13B PE=1 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 1.000e-47
Identity = 98/125 (78.40%), Postives = 110/125 (88.00%), Query Frame = 1


		  
Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGIAVDHRR+NRSLEGLQTNVQRLKTYK KLV+FPR ARK KAGDSTPEE
Sbjct: 82  AGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG++LPI   K  M++V +T++MK+  A+ K+RLERTNKRH G R KRAAEAE
Sbjct: 142 LANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206

[Close]

BLAST of Spo12681.1 vs. ExPASy Swiss-Prot
Match: RL132_BRANA (60S ribosomal protein L13-2 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 2.900e-47
Identity = 96/125 (76.80%), Postives = 112/125 (89.60%), Query Frame = 1


		  
Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI++DHRR+NRSLEGLQ+NVQRLKTYKAKLV+FPR ARK KAGDST EE
Sbjct: 82  AGIPKKLAPTIGISLDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG+++PI   K  M++V +T++MK+VNAY K+RLERTNKRH G R KRAA+AE
Sbjct: 142 LANATQVQGDYMPIVREKQAMELVKLTSEMKSVNAYDKIRLERTNKRHAGARAKRAADAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206

[Close]

BLAST of Spo12681.1 vs. ExPASy Swiss-Prot
Match: RL131_BRANA (60S ribosomal protein L13-1 OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 7.200e-46
Identity = 95/125 (76.00%), Postives = 109/125 (87.20%), Query Frame = 1


		  
Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGIAVDHRR+NRSLEGLQ+NVQRLKTYKAKLV+FPR ARK KAGDST EE
Sbjct: 82  AGIPKKLAPTIGIAVDHRRKNRSLEGLQSNVQRLKTYKAKLVIFPRRARKVKAGDSTAEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG+++PI   K   ++V +T +MK+V A+ K+RLERTNKRH G R KRAA+AE
Sbjct: 142 LANATQVQGDYMPIVREKHATELVKLTTEMKSVKAFDKIRLERTNKRHAGARAKRAADAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206

[Close]

BLAST of Spo12681.1 vs. ExPASy Swiss-Prot
Match: RL132_ARATH (Putative 60S ribosomal protein L13-2 OS=Arabidopsis thaliana GN=RPL13C PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.400e-41
Identity = 89/125 (71.20%), Postives = 101/125 (80.80%), Query Frame = 1


		  
Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI+VDH R+NRSLEG QTNVQRLKTYKAKLV+FPR AR  K GDS  +E
Sbjct: 82  AGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQ + +PI      M++V +T+DMK  NAY K+RLE  NKRH G+R KRAAEAE
Sbjct: 142 LANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206

[Close]

BLAST of Spo12681.1 vs. TAIR (Arabidopsis)
Match: AT5G23900.1 (Ribosomal protein L13e family protein)

HSP 1 Score: 192.2 bits (487), Expect = 1.900e-49
Identity = 98/125 (78.40%), Postives = 112/125 (89.60%), Query Frame = 1


		  
Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI+VDHRR+NRSLEGLQ+NVQRLKTYKAKLVVFPR +R+ KAGDSTPEE
Sbjct: 82  AGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRSRQVKAGDSTPEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG+++PI +VK  M++V +TAD+KA  AY K+RLERTN RH G R KRAAEAE
Sbjct: 142 LANATQVQGDYMPIASVKAAMELVKLTADLKAFKAYDKIRLERTNARHAGARAKRAAEAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206

[Close]

BLAST of Spo12681.1 vs. TAIR (Arabidopsis)
Match: AT3G49010.1 (breast basic conserved 1)

HSP 1 Score: 190.7 bits (483), Expect = 5.600e-49
Identity = 98/125 (78.40%), Postives = 110/125 (88.00%), Query Frame = 1


		  
Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGIAVDHRR+NRSLEGLQTNVQRLKTYK KLV+FPR ARK KAGDSTPEE
Sbjct: 82  AGIPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYKTKLVIFPRRARKVKAGDSTPEE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQG++LPI   K  M++V +T++MK+  A+ K+RLERTNKRH G R KRAAEAE
Sbjct: 142 LANATQVQGDYLPIVREKPTMELVKLTSEMKSFKAFDKIRLERTNKRHAGARAKRAAEAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206

[Close]

BLAST of Spo12681.1 vs. TAIR (Arabidopsis)
Match: AT3G48960.1 (Ribosomal protein L13e family protein)

HSP 1 Score: 169.5 bits (428), Expect = 1.300e-42
Identity = 89/125 (71.20%), Postives = 101/125 (80.80%), Query Frame = 1


		  
Query: 2   AGIPKKLAPTIGIAVDHRRRNRSLEGLQTNVQRLKTYKAKLVVFPRHARKFKAGDSTPEE 61
           AGIPKKLAPTIGI+VDH R+NRSLEG QTNVQRLKTYKAKLV+FPR AR  K GDS  +E
Sbjct: 82  AGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQE 141

Query: 62  LANATQVQGEFLPIENVKVPMDIVSVTADMKAVNAYAKLRLERTNKRHQGIRLKRAAEAE 121
           LANATQVQ + +PI      M++V +T+DMK  NAY K+RLE  NKRH G+R KRAAEAE
Sbjct: 142 LANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAE 201

Query: 122 KEEKK 127
           KEEKK
Sbjct: 202 KEEKK 206

The following BLAST results are available for this feature:

BLAST of Spo12681.1 vs. NCBI nr
BLAST of Spo12681.1 vs. UniProtKB/TrEMBL
BLAST of Spo12681.1 vs. ExPASy Swiss-Prot
BLAST of Spo12681.1 vs. TAIR (Arabidopsis)

BLAST of Spo12681.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902231534\|gb\|KNA22308.1\|	1.8e-60	100.	hypothetical protein SOVF_0354...	[more]
gi\|731332983\|ref\|XP_010677493.1\|	3.6e-53	88.0	PREDICTED: 60S ribosomal prote...	[more]
gi\|567138975\|ref\|XP_006394649.1\|	5.0e-47	80.0	hypothetical protein EUTSA_v10...	[more]
gi\|727444088\|ref\|XP_010503548.1\|	1.4e-46	80.0	PREDICTED: 60S ribosomal prote...	[more]
gi\|593790206\|ref\|XP_007158142.1\|	2.5e-46	80.0	hypothetical protein PHAVU_002...	[more]

BLAST of Spo12681.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RS61_SPIOL	1.2e-60	100.	60S ribosomal protein L13 OS=S...	[more]
A0A0J8F6B0_BETVU	2.5e-53	88.0	60S ribosomal protein L13 OS=B...	[more]
V4MKI2_EUTSA	3.5e-47	80.0	Uncharacterized protein OS=Eut...	[more]
V7CMM3_PHAVU	1.7e-46	80.0	60S ribosomal protein L13 OS=P...	[more]
D7M2E3_ARALL	2.9e-46	79.2	60S ribosomal protein L13 OS=A...	[more]

BLAST of Spo12681.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RL133_ARATH	3.4e-48	78.4	60S ribosomal protein L13-3 OS...	[more]
RL131_ARATH	1.0e-47	78.4	60S ribosomal protein L13-1 OS...	[more]
RL132_BRANA	2.9e-47	76.8	60S ribosomal protein L13-2 OS...	[more]
RL131_BRANA	7.2e-46	76.0	60S ribosomal protein L13-1 OS...	[more]
RL132_ARATH	2.4e-41	71.2	Putative 60S ribosomal protein...	[more]

BLAST of Spo12681.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT5G23900.1	1.9e-49	78.4	Ribosomal protein L13e family ...	[more]
AT3G49010.1	5.6e-49	78.4	breast basic conserved 1	[more]
AT3G48960.1	1.3e-42	71.2	Ribosomal protein L13e family ...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001380	Ribosomal protein L13e	PANTHER	PTHR11722	60S RIBOSOMAL PROTEIN L13	coord: 2..126 score: 8.6
IPR001380	Ribosomal protein L13e	PFAM	PF01294	Ribosomal_L13e	coord: 2..104 score: 2.2
None	No IPR available	PANTHER	PTHR11722:SF1	SUBFAMILY NOT NAMED	coord: 2..126 score: 8.6

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome