Spo12820.1 (mRNA)

Overview
NameSpo12820.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 1209090 .. 1210751 (+)
Sequence length953
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTCCCTCCTTCCTTTTAGATTGCTTCGCATACCAAGACTGGATGTTACTTTGAATTTTCCTCATTCAACTTTTGTAAATTTTTCCCATTTGTAAGTTGTTAACACATACCCCACAACTCCACAATGGACATCCCTGTATGGCCAACCTTTTCCCTCAGCCACAGAAAAGTGAAATATCATATCACCCCATTATTGCCCATTCTGTATTTGCATTTTTTTAACGGCATAATACACCCGGTTAACCCGAGCTTAGCTCCGATTACATCCGAATCCGACCTGTGTCGCACACCTTGTTTGTGGTGGGTGAGTTTCTGCATAATTGAGTGTACTCTCATTTAGTTCACACTATCTGGATCGTGAGAAATGGCTTCATTTGGAAGAGTTGTTAATGTTGGGTCAAAGGGGAAGCAAGGTTGTAGTGACCGCACGTTCAAGTTGTAAGCATCTGATTGACTTCTTAAATTTTCAGATGCTGTACTCACCAGTTTATCCTGCATTTTTTGATACTGCGCTTCTTGTTGTGACTTCCACATTGGTATTTTGGGTGATTTCACAGGAAAACAAATAAAATACCTAGAACCACAATAGGAAAATATATCTGTAGCATGGTACACTGGCCAAGTAATGCAATGTTTTCTATCTGTCATACAGTAATACTTGGAGATTATTTTACTTTTACCACATATATTCACCCTTTTTATTTCATTGTTGCAGGTTTTTATGACAGCAAACATAACACTTACGGTTTGAATGGCAGGAAGACATGCCTAACTGCCAAAGATTGTGATCACCATGTTGATCTTTGTCACTCAAGCAGACTTGCAATATCGTCTGTTTGAGTTTTACAGACAAGCAGCCGAAACAGGGAATAATCAGTTCAGGTCACAGAGTTTATGGCAGATGTTACGATATTAAATTTTAAAAATGCTAAAGGTATTATAGCACTATTTCTTTTTGCTACTTCACAAATGGTTTATCTTGTTTGCATCCCTAATTCTGATTGTTGTACTATTCATCATTTGTGCAGCATATTGCTGCTTCAGAGTCTGATCATAACAAACTGTAGTGAAGAAGAGGAGAAAACTGAAAACTTTTGGCAAAACGCAAAATTGCAGTGCCCTGGAAAGGCAGGGGAATCCAGTGCCTCGGGTATGGGGGATTACTCGACAACTCCTGTTCTGACGATCCTTTTTCAACCCGGTTTGTTCCGGTTTTCAGCTATGGGTTTTTCCTTGTACTTATCAGGCACACATAAAAGGCTCCTTCGTGTTTTAGAAACCTACTCTTCTCTTTTTTTTTCACCTTTCTTCATCCCATTGTAAAAGTTCCAATAGATACAGAACTTGCAACGCCGCCCTTTAGATGTATAATTACCAGTTCAGTACAGAGCAAATAGGCTTAAGGCGTTGTAGCATTGTTCGTTCTGATTTTTACGGCACTGATATCCCTCATTTGCAGCTCTACTTCTAGAAACTCTTTCATTCTTTAGTTTTCCTTTTGATTCATGTAACAGTTGAACCTTCTTTCATGACTGATATAGAATCAGGCAGCTACTTCACTACTTCTATGTTGATCTTATTTTGTAATAAACTTTGATAGATTGAATAAAGGTTGTTTGCAGTGACTTCTTAAGATGTGATTAGAAGTCCATAATCAC

mRNA sequence

ATGTATTCCCTCCTTCCTTTTAGATTGCTTCGCATACCAAGACTGGATGTTACTTTGAATTTTCCTCATTCAACTTTTGTAAATTTTTCCCATTTTGTACTCTCATTTAGTTCACACTATCTGGATCGTGAGAAATGGCTTCATTTGGAAGAGTTGTTAATGTTGGGTCAAAGGGGAAGCAAGGTTGTAGTGACCGCACGTTCAAGTTGTTTTTATGACAGCAAACATAACACTTACGGTTTGAATGGCAGGAAGACATGCCTAACTGCCAAAGATTGTGATCACCATGTTGATCTTTGTCACTCAAGCAGACTTGCAATATCCATATTGCTGCTTCAGAGTCTGATCATAACAAACTGTAGTGAAGAAGAGGAGAAAACTGAAAACTTTTGGCAAAACGCAAAATTGCAGTGCCCTGGAAAGGCAGGGGAATCCAGTGCCTCGGGTATGGGGGATTACTCGACAACTCCTGTTCTGACGATCCTTTTTCAACCCGGTTTGTTCCGGTTTTCAGCTATGGGTTTTTCCTTGTACTTATCAGGCACACATAAAAGGCTCCTTCGTGTTTTAGAAACCTACTCTTCTCTTTTTTTTTCACCTTTCTTCATCCCATTGTAAAAGTTCCAATAGATACAGAACTTGCAACGCCGCCCTTTAGATGTATAATTACCAGTTCAGTACAGAGCAAATAGGCTTAAGGCGTTGTAGCATTGTTCGTTCTGATTTTTACGGCACTGATATCCCTCATTTGCAGCTCTACTTCTAGAAACTCTTTCATTCTTTAGTTTTCCTTTTGATTCATGTAACAGTTGAACCTTCTTTCATGACTGATATAGAATCAGGCAGCTACTTCACTACTTCTATGTTGATCTTATTTTGTAATAAACTTTGATAGATTGAATAAAGGTTGTTTGCAGTGACTTCTTAAGATGTGATTAGAAGTCCATAATCAC

Coding sequence (CDS)

ATGTATTCCCTCCTTCCTTTTAGATTGCTTCGCATACCAAGACTGGATGTTACTTTGAATTTTCCTCATTCAACTTTTGTAAATTTTTCCCATTTTGTACTCTCATTTAGTTCACACTATCTGGATCGTGAGAAATGGCTTCATTTGGAAGAGTTGTTAATGTTGGGTCAAAGGGGAAGCAAGGTTGTAGTGACCGCACGTTCAAGTTGTTTTTATGACAGCAAACATAACACTTACGGTTTGAATGGCAGGAAGACATGCCTAACTGCCAAAGATTGTGATCACCATGTTGATCTTTGTCACTCAAGCAGACTTGCAATATCCATATTGCTGCTTCAGAGTCTGATCATAACAAACTGTAGTGAAGAAGAGGAGAAAACTGAAAACTTTTGGCAAAACGCAAAATTGCAGTGCCCTGGAAAGGCAGGGGAATCCAGTGCCTCGGGTATGGGGGATTACTCGACAACTCCTGTTCTGACGATCCTTTTTCAACCCGGTTTGTTCCGGTTTTCAGCTATGGGTTTTTCCTTGTACTTATCAGGCACACATAAAAGGCTCCTTCGTGTTTTAGAAACCTACTCTTCTCTTTTTTTTTCACCTTTCTTCATCCCATTGTAA

Protein sequence

MYSLLPFRLLRIPRLDVTLNFPHSTFVNFSHFVLSFSSHYLDREKWLHLEELLMLGQRGSKVVVTARSSCFYDSKHNTYGLNGRKTCLTAKDCDHHVDLCHSSRLAISILLLQSLIITNCSEEEEKTENFWQNAKLQCPGKAGESSASGMGDYSTTPVLTILFQPGLFRFSAMGFSLYLSGTHKRLLRVLETYSSLFFSPFFIPL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo12820Spo12820gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo12820.1Spo12820.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12820.1.exon.1Spo12820.1.exon.1exon
Spo12820.1.exon.2Spo12820.1.exon.2exon
Spo12820.1.exon.3Spo12820.1.exon.3exon
Spo12820.1.exon.4Spo12820.1.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12820.1.CDS.1Spo12820.1.CDS.1CDS
Spo12820.1.CDS.2Spo12820.1.CDS.2CDS
Spo12820.1.CDS.3Spo12820.1.CDS.3CDS
Spo12820.1.CDS.4Spo12820.1.CDS.4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12820.1.utr3p.1Spo12820.1.utr3p.1three_prime_UTR


Homology
The following BLAST results are available for this feature:
BLAST of Spo12820.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12820.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12820.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo12820.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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