Spo12823.1 (mRNA)

Overview
NameSpo12823.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionCDGSH iron-sulfur domain-containing protein 2A
Locationchr3 : 1265912 .. 1269018 (+)
Sequence length919
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACAAATAACTCAATTCCATGATCAACAACAAAGAGTGTGCTCTCCACACGTTCAAAAAACACACTCCATTTATCTTTCCTTATCATTTTTCATTTCTCAAACAAACACAAATTTTCAATTTCCTTTCAAATTAATTTTATTATTTTTTTTAAAAAAATGGCTTCTTCTATTAATATATTAAGCAATATTAATGGATTTTGCAACACAAAACCATCATTTGGTTTACAACAAAGGAAAAGGATGGTTGTGGTAAGGGCAGAAACAATTAATCCAGAAATTAGGAAAACTGAAGAGAAAGTTGTTGATTCTGTTGTTGTTACTGAACTCTCCAAGAATATCACCCCTTATTGCAGGTATCTTTCCTAATTATTTTATTTATTTATTACTTCGTAATTCCGTATATTTTAGGCTCGCTGTAATATAAAGGTCAATTCAGGTTAGTCGACCACAAATCATTTTCGGACAAAAGCTTGTTGTTGTTGTTGTTGTTGTGTTGTTGTTGTATGTGTAATTTTTGCTTGCATTATACTTCCTCCGTTTTTTAATACTCGCAACGTTTGCGTTTTTTACACTATTCACATAATCTACTTTGATTATTGTTTGCGTTTTATTTATAACATAAAACATTGCCATGTGGGATCTTGTTAGATTCATCTTAATGTGTATTTTCAAAATATCAACTTTTTATATTTTTTACATAAAGATAATTTAAGATATAAATGATCAAAGTTGTGCATTGACATGCGTGAAAATAACAAACATTGCAAGTATTAAAAAACGGAAGAAGTATTTTTTTTTTTGAAAAAAAGTTCATGGCTTACTTCATCTTGCATAATATTAAAACTCGTACTCCTTCTGTTTCAAAATGACAAATACGGATAAGAGATAACAATACGTCAATACCCACATACAAGTATGGAGTATTTAAGAACATACTCGAGTTGGATCTTGTTAGTTTCATATTTAATGTAAATTTTTGAATATCAATTTTTTATAATATTTATTTTGTTGTATTAATTTTTAAAATTAACAATAATGTTTACATAATTTTTTTTCCCATAAATGTATATTGGGTTACTTCAGAAAACCCAATATACATACGAGCCAAAAGCAAGGAAATCGAAATGGCATGTTAAAATTAGTAAAATACCCTGCCACTTTTACATGAGCCCAAATGAACTTAAACATTTGAAGCCCATTATGAAATCTGATTATGGACTACTATGAGGCTCTGAGCCCACAAACTCATGTCTAAGAACATTCTATGGCCCAATTTTCACTGAAACTCTGACCTTTTTGTTATATTTTTTTAATTATTGTTTATTTATATCAGGTAAATTCTAACACTTATAAAGCTTCATACTTTGATTATTATTCACCCAATAGTGCATTTACGTGCATGCCCTTCATTTCCTTCTTTGTTTTATTTTGTCTTATTCTTAACAATAGACCATTTACGGTTTCACCCTTCCATTGCTATACAAAATGTATTGTTTTCTTTGGGTATAATTTCCTTTATATTGTACCTTCAAACTATCAATTAAAACGCATATGGTTTCTATTTCCTGTTACATGTAAATCCAACATCTAACTTTAACATATCATTTCTAGCATTTACCATAAATTGTAAGTTCCTAACTTTTAAGTAACATTTTTACAAAAATAATTGTATATACCTTGGGGTATCGTGCCGCTAGCGCACGATCCAACAACTAGTGTGCATAAATGAATCAACATTCACCAAATACAATCTAAACATACTATGCAACTATGGTCCTTTAGGACCTTTGCAAAATTTACAAAATAACAAAAATACAAAATGATAGTAAGCTCTTCCTGTGACAACTACTTGTATGTTGAGATAGCTTGGTTTGCCCCACTAACGAAGTGTTATCTTGCAAACTAGGGCTGGCAATCCCTAACCCACCCTGATAATCCGACTTGAATCTCGTCCTTAAGTTAAAAGAGAGAAACTCGAACCCGGCCTGGAACGAACCCGAATGACCTGAAATCGACCCGATTTGACCCATTTATCATATATTGTAGTAATATTAATTAAGTTTTACAATATTTCTGATACTTCCTATGTTCATAAATACTCGCAACGTTCGGTATTTTTACACTATTCACATATTCCACTTTGATTATTGTTGGTGATTTATATGTCAAATAAAACATAGTCATGTGTGATCTTGTTAGATTCGTCTCAATATATATTTTTAAAATATCAACTTTTTATAATTTTTGCTTGAAGAGAATTTAAGATATTGACAATCTAAATTATGCATTGGCATGCATGAAAATGACAAACGTTGCGAGTATTTATGAACGGAGGAAGTATTATTTTACACCAACTCGAAATTGACCCAAAACCAAACCCGAACCTGACCCACTGACTCGAATTTCCACCCCTAATATTGCAAACCCACAATTGGCCATGATTTCCTTATAAAAGATAGAGTAGAAAGTTAGGTGGTAAATCCATTAATTAGACTCCTTTAATTTGGTTGATATAAAAAATGTTATTTTTGCTAATTGTAGGTGTTGGAGATCAGGAACTTTTCCTTTATGTGATGGGAGTCATATGAAACACAACAAAGCTACTGGTGACAACGTTGGACCTTTGTTGTTGAAGAAGCAGTAATAATTCTTTAGGTTAACTTTTGTTGCTTTTCTCTTTTCTCTTTGTTATGGATAATGGATTCTATTGTCATTGTATTTCTTTAAATAATGCCTCCTATAATTAATTTGAGTATAAAACTGTGTACTTCACATTTTAAATTCCGTATTACTTAATTTTTCTACTGATCCTTGCCTAAATTGTTCTTGATCGATTTATCAGTTCATTTATTTATGTTACTCCCTCCGTCCCACATTAGTTGTTACACTTTCTTTTTTCGTGCGTCTCAGATTAGTTTTTACACTTCTAAATTAGGAATGACCCCACAATTATTATATTGTCTCTCTCTTCCCACTAAATCTTTTTTTGTCCCCACACCCTTTCTCATTCAATTAGAAAAATACCCCACTAACTCCTATCACATCTACTTTTTCAATAAAATAATAATTGATAACCAAACTACTACTTATCGCATTAAACTGTGT

mRNA sequence

CCACAAATAACTCAATTCCATGATCAACAACAAAGAGTGTGCTCTCCACACGTTCAAAAAACACACTCCATTTATCTTTCCTTATCATTTTTCATTTCTCAAACAAACACAAATTTTCAATTTCCTTTCAAATTAATTTTATTATTTTTTTTAAAAAAATGGCTTCTTCTATTAATATATTAAGCAATATTAATGGATTTTGCAACACAAAACCATCATTTGGTTTACAACAAAGGAAAAGGATGGTTGTGGTAAGGGCAGAAACAATTAATCCAGAAATTAGGAAAACTGAAGAGAAAGTTGTTGATTCTGTTGTTGTTACTGAACTCTCCAAGAATATCACCCCTTATTGCAGGTGTTGGAGATCAGGAACTTTTCCTTTATGTGATGGGAGTCATATGAAACACAACAAAGCTACTGGTGACAACGTTGGACCTTTGTTGTTGAAGAAGCAGTAATAATTCTTTAGGTTAACTTTTGTTGCTTTTCTCTTTTCTCTTTGTTATGGATAATGGATTCTATTGTCATTGTATTTCTTTAAATAATGCCTCCTATAATTAATTTGAGTATAAAACTGTGTACTTCACATTTTAAATTCCGTATTACTTAATTTTTCTACTGATCCTTGCCTAAATTGTTCTTGATCGATTTATCAGTTCATTTATTTATGTTACTCCCTCCGTCCCACATTAGTTGTTACACTTTCTTTTTTCGTGCGTCTCAGATTAGTTTTTACACTTCTAAATTAGGAATGACCCCACAATTATTATATTGTCTCTCTCTTCCCACTAAATCTTTTTTTGTCCCCACACCCTTTCTCATTCAATTAGAAAAATACCCCACTAACTCCTATCACATCTACTTTTTCAATAAAATAATAATTGATAACCAAACTACTACTTATCGCATTAAACTGTGT

Coding sequence (CDS)

ATGGCTTCTTCTATTAATATATTAAGCAATATTAATGGATTTTGCAACACAAAACCATCATTTGGTTTACAACAAAGGAAAAGGATGGTTGTGGTAAGGGCAGAAACAATTAATCCAGAAATTAGGAAAACTGAAGAGAAAGTTGTTGATTCTGTTGTTGTTACTGAACTCTCCAAGAATATCACCCCTTATTGCAGGTGTTGGAGATCAGGAACTTTTCCTTTATGTGATGGGAGTCATATGAAACACAACAAAGCTACTGGTGACAACGTTGGACCTTTGTTGTTGAAGAAGCAGTAA

Protein sequence

MASSINILSNINGFCNTKPSFGLQQRKRMVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLLKKQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo12823Spo12823gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo12823.1Spo12823.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12823.1.exon.1Spo12823.1.exon.1exon
Spo12823.1.exon.2Spo12823.1.exon.2exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12823.1.utr5p.1Spo12823.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12823.1.CDS.1Spo12823.1.CDS.1CDS
Spo12823.1.CDS.2Spo12823.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo12823.1.utr3p.1Spo12823.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo12823.1 vs. NCBI nr
Match: gi|731363863|ref|XP_010693662.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 181.4 bits (459), Expect = 7.600e-43
Identity = 90/106 (84.91%), Postives = 93/106 (87.74%), Query Frame = 1 

		  

Query: 1   MASSINILSNINGFCNTKPSFGL-------QQRKRMVVVRAETINPEIRKTEEKVVDSVV 60
           MAS +  LS INGFC TKPSFG        QQ+KRMVVV+AETINPEIRKTEEKVVDSVV
Sbjct: 1   MASVVTTLSYINGFCCTKPSFGFVSYPSSSQQKKRMVVVKAETINPEIRKTEEKVVDSVV 60

Query: 61  VTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLLKKQ 100
           VTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLLKKQ
Sbjct: 61  VTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLLKKQ 106
[Close]
BLAST of Spo12823.1 vs. NCBI nr
Match: gi|902217475|gb|KNA17737.1| (hypothetical protein SOVF_077520 [Spinacia oleracea])

HSP 1 Score: 150.2 bits (378), Expect = 1.900e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 29  MVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATG 88
           MVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATG
Sbjct: 1   MVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATG 60

Query: 89  DNVGPLLLKKQ 100
           DNVGPLLLKKQ
Sbjct: 61  DNVGPLLLKKQ 71
[Close]
BLAST of Spo12823.1 vs. NCBI nr
Match: gi|297792477|ref|XP_002864123.1| (hypothetical protein ARALYDRAFT_495239 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 141.4 bits (355), Expect = 8.700e-31
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 1 

		  

Query: 24  QQRKRMVVVRAET----INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS 83
           Q+++RMVVVRAE     INPEIRK EEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS
Sbjct: 30  QKQQRMVVVRAEGGGGGINPEIRKNEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS 89

Query: 84  HMKHNKATGDNVGPLLLKKQ 100
           H+KHNKA GDNVGPLLLKKQ
Sbjct: 90  HVKHNKANGDNVGPLLLKKQ 109
[Close]
BLAST of Spo12823.1 vs. NCBI nr
Match: gi|729330553|ref|XP_010536517.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Tarenaya hassleriana])

HSP 1 Score: 141.0 bits (354), Expect = 1.100e-30
Identity = 69/77 (89.61%), Postives = 71/77 (92.21%), Query Frame = 1 

		  

Query: 25  QRKRMVVVRAET--INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMK 84
           +R+  VVVRAE   INPEIRK EEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMK
Sbjct: 30  RRRMSVVVRAEGGGINPEIRKNEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMK 89

Query: 85  HNKATGDNVGPLLLKKQ 100
           HNKATGDNVGPLLLKKQ
Sbjct: 90  HNKATGDNVGPLLLKKQ 106
[Close]
BLAST of Spo12823.1 vs. NCBI nr
Match: gi|747059806|ref|XP_011076302.1| (PREDICTED: CDGSH iron-sulfur domain-containing protein NEET [Sesamum indicum])

HSP 1 Score: 140.2 bits (352), Expect = 1.900e-30
Identity = 68/91 (74.73%), Postives = 75/91 (82.42%), Query Frame = 1 

		  

Query: 15  CNTKPSFGLQQRK------RMVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCW 74
           C    + GL  R+      RMVVVRAE INP+IRKTEEKVVDSVVVT+L+K +TPYCRCW
Sbjct: 41  CVNASALGLAYRRPGSSPRRMVVVRAEAINPDIRKTEEKVVDSVVVTDLAKPLTPYCRCW 100

Query: 75  RSGTFPLCDGSHMKHNKATGDNVGPLLLKKQ 100
           RS TFPLCDGSH+KHNKATGDNVGPLLLKKQ
Sbjct: 101 RSATFPLCDGSHVKHNKATGDNVGPLLLKKQ 131
[Close]
BLAST of Spo12823.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BC48_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g067500 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 5.300e-43
Identity = 90/106 (84.91%), Postives = 93/106 (87.74%), Query Frame = 1 

		  

Query: 1   MASSINILSNINGFCNTKPSFGL-------QQRKRMVVVRAETINPEIRKTEEKVVDSVV 60
           MAS +  LS INGFC TKPSFG        QQ+KRMVVV+AETINPEIRKTEEKVVDSVV
Sbjct: 1   MASVVTTLSYINGFCCTKPSFGFVSYPSSSQQKKRMVVVKAETINPEIRKTEEKVVDSVV 60

Query: 61  VTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLLKKQ 100
           VTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLLKKQ
Sbjct: 61  VTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLLKKQ 106
[Close]
BLAST of Spo12823.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RFY0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_077520 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.300e-33
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 29  MVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATG 88
           MVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATG
Sbjct: 1   MVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATG 60

Query: 89  DNVGPLLLKKQ 100
           DNVGPLLLKKQ
Sbjct: 61  DNVGPLLLKKQ 71
[Close]
BLAST of Spo12823.1 vs. UniProtKB/TrEMBL
Match: D7MR33_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_495239 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 6.100e-31
Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 1 

		  

Query: 24  QQRKRMVVVRAET----INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS 83
           Q+++RMVVVRAE     INPEIRK EEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS
Sbjct: 30  QKQQRMVVVRAEGGGGGINPEIRKNEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS 89

Query: 84  HMKHNKATGDNVGPLLLKKQ 100
           H+KHNKA GDNVGPLLLKKQ
Sbjct: 90  HVKHNKANGDNVGPLLLKKQ 109
[Close]
BLAST of Spo12823.1 vs. UniProtKB/TrEMBL
Match: A0A078EI93_BRANA (BnaA10g07790D protein OS=Brassica napus GN=BnaA10g07790D PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.800e-30
Identity = 68/80 (85.00%), Postives = 72/80 (90.00%), Query Frame = 1 

		  

Query: 24  QQRKRMVVVRAET----INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS 83
           ++++RM VVRAE     INPEIRK EEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS
Sbjct: 29  RKQQRMAVVRAEGGGGGINPEIRKNEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGS 88

Query: 84  HMKHNKATGDNVGPLLLKKQ 100
           HMKHNKA GDNVGPLLLKKQ
Sbjct: 89  HMKHNKANGDNVGPLLLKKQ 108
[Close]
BLAST of Spo12823.1 vs. UniProtKB/TrEMBL
Match: W9S1F7_9ROSA (CDGSH iron-sulfur domain-containing protein 2A OS=Morus notabilis GN=L484_012960 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.300e-30
Identity = 69/86 (80.23%), Postives = 76/86 (88.37%), Query Frame = 1 

		  

Query: 18  KPSFGLQQR--KRMVVVRAE--TINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTF 77
           KP+   + R  +R+VVVRAE   INPEIRK+EEKVVDSVVVTELSK +TPYCRCWRSGTF
Sbjct: 32  KPTTNFKSRSSRRLVVVRAEGQAINPEIRKSEEKVVDSVVVTELSKPLTPYCRCWRSGTF 91

Query: 78  PLCDGSHMKHNKATGDNVGPLLLKKQ 100
           PLCDGSH+KHNKATGDNVGPLLLKKQ
Sbjct: 92  PLCDGSHVKHNKATGDNVGPLLLKKQ 117
[Close]
BLAST of Spo12823.1 vs. ExPASy Swiss-Prot
Match: NEET_ARATH (CDGSH iron-sulfur domain-containing protein NEET OS=Arabidopsis thaliana GN=NEET PE=1 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 2.700e-32
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 1 

		  

Query: 24  QQRKRMVVVRAET---INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSH 83
           ++++RMVVVRAE    INPEIRK E+KVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSH
Sbjct: 30  RKQQRMVVVRAEGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSH 89

Query: 84  MKHNKATGDNVGPLLLKKQ 100
           +KHNKA GDNVGPLLLKKQ
Sbjct: 90  VKHNKANGDNVGPLLLKKQ 108
[Close]
BLAST of Spo12823.1 vs. ExPASy Swiss-Prot
Match: CID2A_ONCMY (CDGSH iron-sulfur domain-containing protein 2A OS=Oncorhynchus mykiss GN=cisd2a PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.100e-16
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 1 

		  

Query: 37  INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLL 96
           IN EI+K   KVV+ + + +L++    YCRCWRS TFP+CD SH+KHN+ TGDNVGPL+L
Sbjct: 71  INLEIQKENPKVVNEIDIEDLNRTNVCYCRCWRSKTFPVCDKSHIKHNELTGDNVGPLIL 130

Query: 97  KKQ 100
           KK+
Sbjct: 131 KKK 133
[Close]
BLAST of Spo12823.1 vs. ExPASy Swiss-Prot
Match: CISD2_MOUSE (CDGSH iron-sulfur domain-containing protein 2 OS=Mus musculus GN=Cisd2 PE=1 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 4.700e-16
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 1 

		  

Query: 13  GFCNTKPSFGLQQRKRMVVVRAETINPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGT 72
           G+   +P F  +++++        IN +I+K   KVV+ + + +L      YCRCWRS T
Sbjct: 52  GYLAVRPFFPKKKQQK-----DSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKT 111

Query: 73  FPLCDGSHMKHNKATGDNVGPLLLKKQ 100
           FP CDGSH KHN+ TGDNVGPL+LKK+
Sbjct: 112 FPACDGSHNKHNELTGDNVGPLILKKK 133
[Close]
BLAST of Spo12823.1 vs. ExPASy Swiss-Prot
Match: CID2A_XENLA (CDGSH iron-sulfur domain-containing protein 2A OS=Xenopus laevis GN=cisd2-a PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.900e-16
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1 

		  

Query: 37  INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLL 96
           IN +I+K   KVV+ + + +L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNVGPLIL 130

Query: 97  KKQ 100
           KK+
Sbjct: 131 KKK 133
[Close]
BLAST of Spo12823.1 vs. ExPASy Swiss-Prot
Match: CISD2_XENTR (CDGSH iron-sulfur domain-containing protein 2 OS=Xenopus tropicalis GN=cisd2 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 7.900e-16
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 1 

		  

Query: 37  INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSHMKHNKATGDNVGPLLL 96
           IN +I+K   KVV+ + + +L      YCRCWRS TFP+CDGSH KHN+ TGDNVGPL+L
Sbjct: 71  INLKIQKENPKVVNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNVGPLIL 130

Query: 97  KKQ 100
           KK+
Sbjct: 131 KKK 133
[Close]
BLAST of Spo12823.1 vs. TAIR (Arabidopsis)
Match: AT5G51720.1 (2 iron, 2 sulfur cluster binding)

HSP 1 Score: 139.0 bits (349), Expect = 1.500e-33
Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 1 

		  

Query: 24  QQRKRMVVVRAET---INPEIRKTEEKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSH 83
           ++++RMVVVRAE    INPEIRK E+KVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSH
Sbjct: 30  RKQQRMVVVRAEGGGGINPEIRKNEDKVVDSVVVTELSKNITPYCRCWRSGTFPLCDGSH 89

Query: 84  MKHNKATGDNVGPLLLKKQ 100
           +KHNKA GDNVGPLLLKKQ
Sbjct: 90  VKHNKANGDNVGPLLLKKQ 108
The following BLAST results are available for this feature:
BLAST of Spo12823.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731363863|ref|XP_010693662.1|7.6e-4384.9PREDICTED: CDGSH iron-sulfur d... [more]
gi|902217475|gb|KNA17737.1|1.9e-33100.hypothetical protein SOVF_0775... [more]
gi|297792477|ref|XP_002864123.1|8.7e-3186.2hypothetical protein ARALYDRAF... [more]
gi|729330553|ref|XP_010536517.1|1.1e-3089.6PREDICTED: CDGSH iron-sulfur d... [more]
gi|747059806|ref|XP_011076302.1|1.9e-3074.7PREDICTED: CDGSH iron-sulfur d... [more]
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BLAST of Spo12823.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8BC48_BETVU5.3e-4384.9Uncharacterized protein OS=Bet... [more]
A0A0K9RFY0_SPIOL1.3e-33100.Uncharacterized protein OS=Spi... [more]
D7MR33_ARALL6.1e-3186.2Putative uncharacterized prote... [more]
A0A078EI93_BRANA1.8e-3085.0BnaA10g07790D protein OS=Brass... [more]
W9S1F7_9ROSA2.3e-3080.2CDGSH iron-sulfur domain-conta... [more]
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BLAST of Spo12823.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NEET_ARATH2.7e-3284.8CDGSH iron-sulfur domain-conta... [more]
CID2A_ONCMY2.1e-1658.7CDGSH iron-sulfur domain-conta... [more]
CISD2_MOUSE4.7e-1645.9CDGSH iron-sulfur domain-conta... [more]
CID2A_XENLA7.9e-1658.7CDGSH iron-sulfur domain-conta... [more]
CISD2_XENTR7.9e-1658.7CDGSH iron-sulfur domain-conta... [more]
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BLAST of Spo12823.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G51720.11.5e-3384.82 iron, 2 sulfur cluster bindi... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018967Iron sulphur-containing domain, CDGSH-typePFAMPF09360zf-CDGSHcoord: 54..80
score: 4.
IPR018967Iron sulphur-containing domain, CDGSH-typeSMARTSM00704znf_cdgshcoord: 47..86
score: 4.
NoneNo IPR availablePANTHERPTHR13680FAMILY NOT NAMEDcoord: 25..99
score: 1.1

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055072 iron ion homeostasis
biological_process GO:0010150 leaf senescence
biological_process GO:0016556 mRNA modification
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0072593 reactive oxygen species metabolic process
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005739 mitochondrion
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0046872 metal ion binding