Spo12919.1 (mRNA) | SpinachBase

Overview


Name	Spo12919.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RAR1
Location	chr3 : 1244185 .. 1247055 (-)
Sequence length	1707

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTATTAGGATATACTAGTGCGTGAATATGATTTGGTCTTTGTTAGCTGTACCTTCCGGGCTTCCAAGAAGGGATTTGGAGAGCTGATTAGCTTGTTGATGAGGGCCACACTTGGGTCAAGCTTTTCATGAGTAATCCTCCCCTTCATGGAAAGACATCGAAACCAGGTTGTTCGTCACGGGGTAGGTAGGAGTTGTAGGACTACAGGACTCTGAAGTGAAGAGTCGTTTAACTTGTTTACCCGATCTCCGACCCCCATCTTTGTCGGTCTGTTCCTTAGAAAACGGAAAAGGAATCAGGAAGGAGTTTCTATATTGATCAGCATTCATTGAAATGTGTCTCGTTTCTTTGATCAGTACTGTTATTTTCTTGCAACTGTACTTTTTTGGTTGAAGGAAATATGTTTCGCTTTTTATTTGGAAGTTACACATGATTGACTGAGCATGTTCAACATTGAATACTTGAGGGTGGTATTACTTCTAATTGACTTAGCTGACATATTTTTCATCGTTGTTGCATGATTGGCGCCGGACCTGTTCACTTTCCCGTTGTTTACCAGGGAGTAAGTGTCCTCTTTACTTTTATTTTCTTTATCCTCTTTACATTCTTATTTCACCTTTTCGAAGATATCGTTTTCCTTTTTACTCTGCTCTTTTTTATTTATTTTTTATATTTCTAATTTCTGTGTTTACGTATTTCTAACTTCTCCTCTTTCTGAAATACATATCAGCCTATATTTCACGATGGAATGAAAGAGTGGAGCTGTTGCAAGAAAAAAAGTCATGACTTCAGCTTGTTTATGGATATTCCAGGGTATGTAAGTGTCCTTTGCCATTTCAGATGCAACATTGTGTTGTGCATCATTGACACTTTTGCGACACTGTGTCGTGCATTATAGCATAGTTCAATATTAATAACCATTGATTAATTCAGTTTTTTAGTGAAGTTTTTTACTCCACATTTATTTATTCTAGTCGTCTTCTTTTACAATGAAGATGCAAAACGGGTACACACACAACTGAGAAGCCTGTGCTCACCAAGGCCGCCCCAAGTCGAAGGAACCCCACGCCTGTTCCTAGTCCTGTCTCAGGTCCTACAACAGCCACATCAGCAAAAGACACTTGCTCTAGGTGCAGACAGGGGTTTTTCTGCTCAGACCACGGTATTTATCTCTTTGCGTTTCCTTTTTTTTCCAGACAAATTGTGTTACTTGTAATACAAATTACTTCTGTTTGAACTGCAAAATTAAGATTTTGCTTTTTGTTTTTCACAATTTCTGATGTAACACCCTTACATCTTATTACAAATTTACAAGGTTCAAAGCCAAATCCCAAACCAGTGGATTCACAAGCAGCTGCCGCTGCAGAAGTGACTGTAACTGCTTCTGCTCCCCCCCGGAAGGCAATCGACATAACTGAGCCTCAAATATGTAAGAATAAGGGATGCGGTCAAACATTTAAAGAGATTGATAACCATGATGCTGCATGCAGCCATCATCCCGGGCCTGCCGTTTTCCACGACCGAATGAGAGGGGTGAGATTTTAGGCGTGGTTTCTTTTAATGCCAATCTATTTGGATAAATTGTTTTTTTTACCACCTAAAAAACTAAAACTTGTATTTTACGGAGTACCACCTAAAAAAAATTGAAACTTGTTTTTTACCACCTGAAAACGAAAAAATAGATAAACCTTTAGGGACCTACTAATTCAATTTTCCTCCAATTTTTTACACTACATATGTGATTTTCTTTAACTCCTTCACCGACCTCTCTTTAATGCCGTTAAATTTTGTCAATTTTGTGAATTAATGGGGGAAAAATTATGTGAATGGAAGAGAAGGAAGCAAGGAAAGGAGTTAAATACATGAAAACGTACTAGAAGAGAAAATATCAGAAATATTATCACGTTATTATGGCACCCACGTAACATTTTTATTTATTTTTTCATTTTTCAGGTGGTAAAAAACACGTTTTAGATATTTTTTTAGGTGGTGAAAACAAATTTATCCTAATCTCTGAATTTGTTGTCCTGGAATACTAAGAGTGGCTTTTTTTTCCGAGCTTGCAGTGGAAATGCTGTGATGTTCATGTGAAGGAATTTGACGAGTTCATGAACATTCCACCTTGCACAAAGGGATGGCACAGTGCTGATCCGTCATCATAGGCAGACGCTACTTCGAGGTGTTTTCACTCTCTTTCCATGATGAACTGCACAAATTCAATCTTTCTAACCTGATTTCTTGCGACCAACTTGGAATTCATGTTTAGCCTCTGCTTCTTCTTCTAAAAGCTGTTCTTATTTTGAATAGGTAGCATTTTCGAACGTTTTTAAGGGGTTTTGCATTGAGGCCGGAACTGTGAAAACGCGTGCCTTTGAAGAAACAAATGAGCATTTGGGCATGTCCAAATTGAACATTTGATGTCACTTTTGATCTTTTTCCTAAACCTTTCCCTCGGAACAATGGTTGCTAAATCTGATTAAAGCAAACTTAGGAAATTAAATCACTATGGAGCTCGGATTTGCAATAGGATTGACAAACTAGCTGCATACAGTATGTCAAATCTCTATTATATAAGTCAACTATTGAGGTGACGTTAAAAGAGTAATTTCCCTTTAACCTTATCATTGCCTTGCAATTATGGCCACAATATTCAAGGTTCAATTCGCCTCGAGTAGAGTATAACCTAAATCTCTAGACAACCCCAACTTTCAACCAACGAACGAGCTCATCGCAGACTGTAGTACATCGGTTACATATGGGCTTGAACACTGCCATTGAGACTACCAATCGCTTGAGCGGTGGTGATAAGAACGTTGAGGACTCGAAGAGACTCGTACAAGATGGGAGCAGTGTAAGTGTGTAACCAATACAT

mRNA sequence

CTATTAGGATATACTAGTGCGTGAATATGATTTGGTCTTTGTTAGCTGTACCTTCCGGGCTTCCAAGAAGGGATTTGGAGAGCTGATTAGCTTGTTGATGAGGGCCACACTTGGGTCAAGCTTTTCATGAGTAATCCTCCCCTTCATGGAAAGACATCGAAACCAGGTTGTTCGTCACGGGGTAGGTAGGAGTTGTAGGACTACAGGACTCTGAAGTGAAGAGTCGTTTAACTTGTTTACCCGATCTCCGACCCCCATCTTTGTCGGTCTGTTCCTTAGAAAACGGAAAAGGAATCAGGAAGGAGTTTCTATATTGATCAGCATTCATTGAAATGTGTCTCGTTTCTTTGATCAGTACTGTTATTTTCTTGCAACTGTACTTTTTTGGTTGAAGGAAATATGTTTCGCTTTTTATTTGGAAGTTACACATGATTGACTGAGCATGTTCAACATTGAATACTTGAGGGTGGTATTACTTCTAATTGACTTAGCTGACATATTTTTCATCGTTGTTGCATGATTGGCGCCGGACCTGTTCACTTTCCCGTTGTTTACCAGGGACCTATATTTCACGATGGAATGAAAGAGTGGAGCTGTTGCAAGAAAAAAAGTCATGACTTCAGCTTGTTTATGGATATTCCAGGATGCAAAACGGGTACACACACAACTGAGAAGCCTGTGCTCACCAAGGCCGCCCCAAGTCGAAGGAACCCCACGCCTGTTCCTAGTCCTGTCTCAGGTCCTACAACAGCCACATCAGCAAAAGACACTTGCTCTAGGTGCAGACAGGGGTTTTTCTGCTCAGACCACGGTTCAAAGCCAAATCCCAAACCAGTGGATTCACAAGCAGCTGCCGCTGCAGAAGTGACTGTAACTGCTTCTGCTCCCCCCCGGAAGGCAATCGACATAACTGAGCCTCAAATATGTAAGAATAAGGGATGCGGTCAAACATTTAAAGAGATTGATAACCATGATGCTGCATGCAGCCATCATCCCGGGCCTGCCGTTTTCCACGACCGAATGAGAGGGTGGAAATGCTGTGATGTTCATGTGAAGGAATTTGACGAGTTCATGAACATTCCACCTTGCACAAAGGGATGGCACAGTGCTGATCCGTCATCATAGGCAGACGCTACTTCGAGGTAGCATTTTCGAACGTTTTTAAGGGGTTTTGCATTGAGGCCGGAACTGTGAAAACGCGTGCCTTTGAAGAAACAAATGAGCATTTGGGCATGTCCAAATTGAACATTTGATGTCACTTTTGATCTTTTTCCTAAACCTTTCCCTCGGAACAATGGTTGCTAAATCTGATTAAAGCAAACTTAGGAAATTAAATCACTATGGAGCTCGGATTTGCAATAGGATTGACAAACTAGCTGCATACAGTATGTCAAATCTCTATTATATAAGTCAACTATTGAGGTGACGTTAAAAGAGTAATTTCCCTTTAACCTTATCATTGCCTTGCAATTATGGCCACAATATTCAAGGTTCAATTCGCCTCGAGTAGAGTATAACCTAAATCTCTAGACAACCCCAACTTTCAACCAACGAACGAGCTCATCGCAGACTGTAGTACATCGGTTACATATGGGCTTGAACACTGCCATTGAGACTACCAATCGCTTGAGCGGTGGTGATAAGAACGTTGAGGACTCGAAGAGACTCGTACAAGATGGGAGCAGTGTAAGTGTGTAACCAATACAT

Coding sequence (CDS)

ATGATTGGCGCCGGACCTGTTCACTTTCCCGTTGTTTACCAGGGACCTATATTTCACGATGGAATGAAAGAGTGGAGCTGTTGCAAGAAAAAAAGTCATGACTTCAGCTTGTTTATGGATATTCCAGGATGCAAAACGGGTACACACACAACTGAGAAGCCTGTGCTCACCAAGGCCGCCCCAAGTCGAAGGAACCCCACGCCTGTTCCTAGTCCTGTCTCAGGTCCTACAACAGCCACATCAGCAAAAGACACTTGCTCTAGGTGCAGACAGGGGTTTTTCTGCTCAGACCACGGTTCAAAGCCAAATCCCAAACCAGTGGATTCACAAGCAGCTGCCGCTGCAGAAGTGACTGTAACTGCTTCTGCTCCCCCCCGGAAGGCAATCGACATAACTGAGCCTCAAATATGTAAGAATAAGGGATGCGGTCAAACATTTAAAGAGATTGATAACCATGATGCTGCATGCAGCCATCATCCCGGGCCTGCCGTTTTCCACGACCGAATGAGAGGGTGGAAATGCTGTGATGTTCATGTGAAGGAATTTGACGAGTTCATGAACATTCCACCTTGCACAAAGGGATGGCACAGTGCTGATCCGTCATCATAG

Protein sequence

MIGAGPVHFPVVYQGPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAAPSRRNPTPVPSPVSGPTTATSAKDTCSRCRQGFFCSDHGSKPNPKPVDSQAAAAAEVTVTASAPPRKAIDITEPQICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVKEFDEFMNIPPCTKGWHSADPSS

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo12919	Spo12919	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo12919.1	Spo12919.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12919.1.utr5p.1	Spo12919.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12919.1.CDS.5	Spo12919.1.CDS.5	CDS
Spo12919.1.CDS.4	Spo12919.1.CDS.4	CDS
Spo12919.1.CDS.3	Spo12919.1.CDS.3	CDS
Spo12919.1.CDS.2	Spo12919.1.CDS.2	CDS
Spo12919.1.CDS.1	Spo12919.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12919.1.utr3p.2	Spo12919.1.utr3p.2	three_prime_UTR
Spo12919.1.utr3p.1	Spo12919.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12919.1.exon.6	Spo12919.1.exon.6	exon
Spo12919.1.exon.5	Spo12919.1.exon.5	exon
Spo12919.1.exon.4	Spo12919.1.exon.4	exon
Spo12919.1.exon.3	Spo12919.1.exon.3	exon
Spo12919.1.exon.2	Spo12919.1.exon.2	exon
Spo12919.1.exon.1	Spo12919.1.exon.1	exon

Homology

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BLAST of Spo12919.1 vs. NCBI nr
Match: gi|902217473|gb|KNA17735.1| (hypothetical protein SOVF_077500 [Spinacia oleracea])

HSP 1 Score: 439.9 bits (1130), Expect = 2.400e-120
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1


		  
Query: 1   MIGAGPVHFPVVYQGPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAA 60
           MIGAGPVHFPVVYQGPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAA
Sbjct: 1   MIGAGPVHFPVVYQGPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAA 60

Query: 61  PSRRNPTPVPSPVSGPTTATSAKDTCSRCRQGFFCSDHGSKPNPKPVDSQAAAAAEVTVT 120
           PSRRNPTPVPSPVSGPTTATSAKDTCSRCRQGFFCSDHGSKPNPKPVDSQAAAAAEVTVT
Sbjct: 61  PSRRNPTPVPSPVSGPTTATSAKDTCSRCRQGFFCSDHGSKPNPKPVDSQAAAAAEVTVT 120

Query: 121 ASAPPRKAIDITEPQICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVK 180
           ASAPPRKAIDITEPQICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVK
Sbjct: 121 ASAPPRKAIDITEPQICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVK 180

Query: 181 EFDEFMNIPPCTKGWHSADPSS 203
           EFDEFMNIPPCTKGWHSADPSS
Sbjct: 181 EFDEFMNIPPCTKGWHSADPSS 202

[Close]

BLAST of Spo12919.1 vs. NCBI nr
Match: gi|870846377|gb|KMS98953.1| (hypothetical protein BVRB_3g067530 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 351.3 bits (900), Expect = 1.100e-93
Identity = 157/202 (77.72%), Postives = 174/202 (86.14%), Query Frame = 1


		  
Query: 1   MIGAGPVHFPVVYQGPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAA 60
           +IG+GPV F  VYQGPIFHDGMKEWSCCKKKSHDFSLF+++PGCKTG HTTEKPVLTK A
Sbjct: 42  IIGSGPVGFAFVYQGPIFHDGMKEWSCCKKKSHDFSLFLELPGCKTGKHTTEKPVLTKTA 101

Query: 61  PSRRNPTPVPSPVSGPTTATSAKDTCSRCRQGFFCSDHGSKPNPKPVDSQAAAAAEVTVT 120
           PS R   P PSPV GP  A S+++TCSRCRQGFFCSDHGS+PN K V+SQA AA E    
Sbjct: 102 PSPRKYAPAPSPVPGPAPAQSSRETCSRCRQGFFCSDHGSQPNAKQVNSQAVAATEGAEN 161

Query: 121 ASAPPRKAIDITEPQICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVK 180
            SA PR+ I I EPQICKNKGCGQTFKEI+NHD AC++HPGPA+FHDRMRGWKCCDVHVK
Sbjct: 162 VSAAPRRIIGINEPQICKNKGCGQTFKEINNHDTACNYHPGPAIFHDRMRGWKCCDVHVK 221

Query: 181 EFDEFMNIPPCTKGWHSADPSS 203
           EFDEFM+IPPCTKGWHSA+PSS
Sbjct: 222 EFDEFMSIPPCTKGWHSANPSS 243

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BLAST of Spo12919.1 vs. NCBI nr
Match: gi|731363872|ref|XP_010693666.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 332.8 bits (852), Expect = 4.200e-88
Identity = 148/188 (78.72%), Postives = 163/188 (86.70%), Query Frame = 1


		  
Query: 15  GPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAAPSRRNPTPVPSPVS 74
           GPIFHDGMKEWSCCKKKSHDFSLF+++PGCKTG HTTEKPVLTK APS R   P PSPV 
Sbjct: 35  GPIFHDGMKEWSCCKKKSHDFSLFLELPGCKTGKHTTEKPVLTKTAPSPRKYAPAPSPVP 94

Query: 75  GPTTATSAKDTCSRCRQGFFCSDHGSKPNPKPVDSQAAAAAEVTVTASAPPRKAIDITEP 134
           GP  A S+++TCSRCRQGFFCSDHGS+PN K V+SQA AA E     SA PR+ I I EP
Sbjct: 95  GPAPAQSSRETCSRCRQGFFCSDHGSQPNAKQVNSQAVAATEGAENVSAAPRRIIGINEP 154

Query: 135 QICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVKEFDEFMNIPPCTKG 194
           QICKNKGCGQTFKEI+NHD AC++HPGPA+FHDRMRGWKCCDVHVKEFDEFM+IPPCTKG
Sbjct: 155 QICKNKGCGQTFKEINNHDTACNYHPGPAIFHDRMRGWKCCDVHVKEFDEFMSIPPCTKG 214

Query: 195 WHSADPSS 203
           WHSA+PSS
Sbjct: 215 WHSANPSS 222

[Close]

BLAST of Spo12919.1 vs. NCBI nr
Match: gi|747105736|ref|XP_011101143.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1-like [Sesamum indicum])

HSP 1 Score: 293.1 bits (749), Expect = 3.700e-76
Identity = 135/191 (70.68%), Postives = 151/191 (79.06%), Query Frame = 1


		  
Query: 15  GPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAAPSRRNPTPVPSPVS 74
           GPIFHDGMKEWSCCKK+SHDFSLF++IPGCKTG HTTEKPVL KAA + +       PVS
Sbjct: 31  GPIFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLAKAAAAPK------LPVS 90

Query: 75  GPTTAT--SAKDTCSRCRQGFFCSDHGSKP---NPKPVDSQAAAAAEVTVTASAPPRKAI 134
            PTT T  S+KDTCSRCRQGFFCSDHGS+    NPK  ++   A   +      P +K I
Sbjct: 91  APTTTTNLSSKDTCSRCRQGFFCSDHGSQARELNPKTSNASGDALGGLQAAQPPPAKKII 150

Query: 135 DITEPQICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVKEFDEFMNIP 194
           DI  PQICKNKGCG+TFKE DNHD ACS+HPGPAVFHDRMRGWKCCD+HVKEFDEFM+IP
Sbjct: 151 DINHPQICKNKGCGRTFKERDNHDTACSYHPGPAVFHDRMRGWKCCDIHVKEFDEFMSIP 210

Query: 195 PCTKGWHSADP 201
           PC KGWH+ADP
Sbjct: 211 PCAKGWHNADP 215

[Close]

BLAST of Spo12919.1 vs. NCBI nr
Match: gi|747059804|ref|XP_011076301.1| (PREDICTED: cysteine and histidine-rich domain-containing protein RAR1-like [Sesamum indicum])

HSP 1 Score: 293.1 bits (749), Expect = 3.700e-76
Identity = 132/192 (68.75%), Postives = 156/192 (81.25%), Query Frame = 1


		  
Query: 15  GPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAAPSRRNPTPVPSPVS 74
           GPIFHDGMKEWSCCKK+SHDF+LF++IPGCKTG HTTEKPVL KAA + + P   P+   
Sbjct: 31  GPIFHDGMKEWSCCKKRSHDFNLFLEIPGCKTGKHTTEKPVLAKAAAAPKKPVSAPN--- 90

Query: 75  GPTTATSAKDTCSRCRQGFFCSDHGS---KPNPKP-VDSQAAAAAEVTVTASAPPRKAID 134
            PTT +S+K+TC RCRQGFFCSDHGS   + NPKP VD+ + + A+      +  +K +D
Sbjct: 91  -PTTNSSSKETCPRCRQGFFCSDHGSHARESNPKPAVDASSKSNADTQEARPSQTKKIVD 150

Query: 135 ITEPQICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVKEFDEFMNIPP 194
           I EPQICKNKGCG+TFKE DNH+ ACS+HPGP VFHDRMRGWKCCD+HVKEFDEFM+IPP
Sbjct: 151 INEPQICKNKGCGKTFKEKDNHETACSYHPGPPVFHDRMRGWKCCDIHVKEFDEFMSIPP 210

Query: 195 CTKGWHSADPSS 203
           CTKGWH+ADP S
Sbjct: 211 CTKGWHNADPVS 218

[Close]

BLAST of Spo12919.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RE15_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_077500 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 1.700e-120
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 1


		  
Query: 1   MIGAGPVHFPVVYQGPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAA 60
           MIGAGPVHFPVVYQGPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAA
Sbjct: 1   MIGAGPVHFPVVYQGPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAA 60

Query: 61  PSRRNPTPVPSPVSGPTTATSAKDTCSRCRQGFFCSDHGSKPNPKPVDSQAAAAAEVTVT 120
           PSRRNPTPVPSPVSGPTTATSAKDTCSRCRQGFFCSDHGSKPNPKPVDSQAAAAAEVTVT
Sbjct: 61  PSRRNPTPVPSPVSGPTTATSAKDTCSRCRQGFFCSDHGSKPNPKPVDSQAAAAAEVTVT 120

Query: 121 ASAPPRKAIDITEPQICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVK 180
           ASAPPRKAIDITEPQICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVK
Sbjct: 121 ASAPPRKAIDITEPQICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVK 180

Query: 181 EFDEFMNIPPCTKGWHSADPSS 203
           EFDEFMNIPPCTKGWHSADPSS
Sbjct: 181 EFDEFMNIPPCTKGWHSADPSS 202

[Close]

BLAST of Spo12919.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BG33_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g067530 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 7.900e-94
Identity = 157/202 (77.72%), Postives = 174/202 (86.14%), Query Frame = 1


		  
Query: 1   MIGAGPVHFPVVYQGPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAA 60
           +IG+GPV F  VYQGPIFHDGMKEWSCCKKKSHDFSLF+++PGCKTG HTTEKPVLTK A
Sbjct: 42  IIGSGPVGFAFVYQGPIFHDGMKEWSCCKKKSHDFSLFLELPGCKTGKHTTEKPVLTKTA 101

Query: 61  PSRRNPTPVPSPVSGPTTATSAKDTCSRCRQGFFCSDHGSKPNPKPVDSQAAAAAEVTVT 120
           PS R   P PSPV GP  A S+++TCSRCRQGFFCSDHGS+PN K V+SQA AA E    
Sbjct: 102 PSPRKYAPAPSPVPGPAPAQSSRETCSRCRQGFFCSDHGSQPNAKQVNSQAVAATEGAEN 161

Query: 121 ASAPPRKAIDITEPQICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVK 180
            SA PR+ I I EPQICKNKGCGQTFKEI+NHD AC++HPGPA+FHDRMRGWKCCDVHVK
Sbjct: 162 VSAAPRRIIGINEPQICKNKGCGQTFKEINNHDTACNYHPGPAIFHDRMRGWKCCDVHVK 221

Query: 181 EFDEFMNIPPCTKGWHSADPSS 203
           EFDEFM+IPPCTKGWHSA+PSS
Sbjct: 222 EFDEFMSIPPCTKGWHSANPSS 243

[Close]

BLAST of Spo12919.1 vs. UniProtKB/TrEMBL
Match: U5FN18_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s14260g PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 7.400e-76
Identity = 126/188 (67.02%), Postives = 149/188 (79.26%), Query Frame = 1


		  
Query: 15  GPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAAPSRRNPTPVPSPVS 74
           GP FHDGMKEWSCCKK+SHDFSLF++IPGCKTG HTTEKPVL KA P+     P   P +
Sbjct: 36  GPFFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLAKATPTPTPKNPFSPPTA 95

Query: 75  GPTTATSAKDTCSRCRQGFFCSDHGSKPNPKPVDSQAAAAAEVTVTASAPPRKAIDITEP 134
            P T +S+K++C RC+QGFFCSDHGS+  PK        AA     ASAP +K +DI +P
Sbjct: 96  APATNSSSKESCPRCKQGFFCSDHGSQAQPK--------AAPAKSCASAPAKKVVDINQP 155

Query: 135 QICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVKEFDEFMNIPPCTKG 194
           Q CKN+GCGQTFKE DNH+ AC++HPGPAVFHDRMRGWKCCD+HVKEFDEFM++PPC+KG
Sbjct: 156 QTCKNQGCGQTFKEKDNHETACNYHPGPAVFHDRMRGWKCCDIHVKEFDEFMSVPPCSKG 215

Query: 195 WHSADPSS 203
           WH ADP+S
Sbjct: 216 WHDADPAS 215

[Close]

BLAST of Spo12919.1 vs. UniProtKB/TrEMBL
Match: A9PCC6_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 9.700e-76
Identity = 126/188 (67.02%), Postives = 149/188 (79.26%), Query Frame = 1


		  
Query: 15  GPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAAPSRRNPTPVPSPVS 74
           GP FHDGMKEWSCCKK+SHDFSLF++IPGCKTG HTTEKPVL KA P+     P   P +
Sbjct: 36  GPFFHDGMKEWSCCKKRSHDFSLFLEIPGCKTGKHTTEKPVLAKATPTPTPKNPFSPPTA 95

Query: 75  GPTTATSAKDTCSRCRQGFFCSDHGSKPNPKPVDSQAAAAAEVTVTASAPPRKAIDITEP 134
            P T +S+K++C RC+QGFFCSDHGS+  PK        AA     ASAP +K +DI +P
Sbjct: 96  APATNSSSKESCPRCKQGFFCSDHGSQAQPK--------AAPAKSYASAPAKKVVDINQP 155

Query: 135 QICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVKEFDEFMNIPPCTKG 194
           Q CKN+GCGQTFKE DNH+ AC++HPGPAVFHDRMRGWKCCD+HVKEFDEFM++PPC+KG
Sbjct: 156 QTCKNQGCGQTFKEKDNHETACNYHPGPAVFHDRMRGWKCCDIHVKEFDEFMSVPPCSKG 215

Query: 195 WHSADPSS 203
           WH ADP+S
Sbjct: 216 WHDADPAS 215

[Close]

BLAST of Spo12919.1 vs. UniProtKB/TrEMBL
Match: I3SK99_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 3.700e-75
Identity = 135/196 (68.88%), Postives = 153/196 (78.06%), Query Frame = 1


		  
Query: 15  GPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAAPSRRNPTPVPSPVS 74
           GP+FHDGMKEWSCCKK+SHDFSLF+ IPGCKTG HTTEK V+   AP ++NP  VP+P +
Sbjct: 34  GPLFHDGMKEWSCCKKRSHDFSLFLQIPGCKTGKHTTEKQVI---APVKKNP--VPTPTA 93

Query: 75  GPTTATSAKDTCSRCRQGFFCSDHGSKPNP------KPVD--SQAAAAAEVTVTASAPPR 134
            P+T  SAKD+CSRCRQGFFCSD GS+         K V+    A A     V A  PP+
Sbjct: 94  APSTNASAKDSCSRCRQGFFCSDRGSQSKAVNIVGDKSVNRAGDAPAVNSSIVQAPKPPK 153

Query: 135 KAIDITEPQICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVKEFDEFM 194
           K +DI EPQ CKNKGCGQTFKE DNHD ACS+HPGPAVFHDRMRGWKCCDVHVKEFDEF+
Sbjct: 154 KIVDINEPQTCKNKGCGQTFKEKDNHDTACSYHPGPAVFHDRMRGWKCCDVHVKEFDEFI 213

Query: 195 NIPPCTKGWHSADPSS 203
           +IPPCTKGWH+ADP S
Sbjct: 214 SIPPCTKGWHNADPDS 224

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BLAST of Spo12919.1 vs. ExPASy Swiss-Prot
Match: RAR1_ARATH (Cysteine and histidine-rich domain-containing protein RAR1 OS=Arabidopsis thaliana GN=RAR1 PE=1 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.700e-76
Identity = 129/190 (67.89%), Postives = 146/190 (76.84%), Query Frame = 1


		  
Query: 15  GPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAAPSRRNPTPVPSPVS 74
           GP FHDGMKEWSCCK++SHDFSLF++IPGCKTG HTTEKPVL K+ P      PV +P S
Sbjct: 37  GPFFHDGMKEWSCCKQRSHDFSLFLEIPGCKTGKHTTEKPVLAKSVPKH----PVAAPTS 96

Query: 75  GPTTATSAKDTCSRCRQGFFCSDHGSKPNP--KPVDSQAAAAAEVTVTASAPP--RKAID 134
            P    + KD+CSRCRQGFFCSDHGS+P    K   +    A E  +   APP  +  ID
Sbjct: 97  SPDANAATKDSCSRCRQGFFCSDHGSQPKEQIKQTLNTPGQAEEEKIEPLAPPVQKAVID 156

Query: 135 ITEPQICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVKEFDEFMNIPP 194
           I +PQ+CKNKGCGQTFKE DNH+ ACSHHPGPAVFHDR+RGWKCCDVHVKEFDEFM IPP
Sbjct: 157 INQPQVCKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPP 216

Query: 195 CTKGWHSADP 201
           CTKGWHS+ P
Sbjct: 217 CTKGWHSSSP 222

[Close]

BLAST of Spo12919.1 vs. ExPASy Swiss-Prot
Match: RAR1_ORYSJ (Cysteine and histidine-rich domain-containing protein RAR1 OS=Oryza sativa subsp. japonica GN=RAR1 PE=1 SV=2)

HSP 1 Score: 265.4 bits (677), Expect = 5.100e-70
Identity = 121/186 (65.05%), Postives = 143/186 (76.88%), Query Frame = 1


		  
Query: 15  GPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAAPSRRNPTPVPSPVS 74
           GP+FHDGMK+WSCCK+KSHDFSLF+ IPGCKTG HTTEKP+ TKA P++ +   VP   S
Sbjct: 51  GPMFHDGMKQWSCCKQKSHDFSLFLAIPGCKTGKHTTEKPI-TKAVPTKPSKA-VPVQTS 110

Query: 75  GPTTATSAKDTCSRCRQGFFCSDHGSKPNPK-PVDSQAAAAAEVTVTASAPPRKAIDITE 134
             +      DTCSRCRQGFFCSDHGS+P  + P  +       V   A  PP+K ID+ E
Sbjct: 111 KQSVGA---DTCSRCRQGFFCSDHGSQPKAQIPTATSDTNMVPVEKPAVPPPKKKIDLNE 170

Query: 135 PQICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVKEFDEFMNIPPCTK 194
           P++CKNKGCG+T+KE DNHD AC +HPGPAVF DR+RGWKCCD+HVKEFDEFM IPPCTK
Sbjct: 171 PRVCKNKGCGKTYKEKDNHDEACDYHPGPAVFRDRIRGWKCCDIHVKEFDEFMEIPPCTK 230

Query: 195 GWHSAD 200
           GWH+AD
Sbjct: 231 GWHNAD 231

[Close]

BLAST of Spo12919.1 vs. ExPASy Swiss-Prot
Match: CHRD1_XENLA (Cysteine and histidine-rich domain-containing protein 1 OS=Xenopus laevis GN=chordc1 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.800e-21
Identity = 62/203 (30.54%), Postives = 94/203 (46.31%), Query Frame = 1


		  
Query: 16  PIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAAPSRRNPTPVPSPVSG 75
           P+FHD +K WSCCK+++ DFS F+ I GC  G H  EKP               P PV  
Sbjct: 31  PVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGQHNNEKP---------------PEPVKP 90

Query: 76  PTTATSAKDTCSRCRQGFFCSDHGSKPNPKPVD-----SQAAAAAEVTVTASAPPRKAID 135
               TS K   +  +  F   +      PKP++     S     A++ +  SA  ++A+D
Sbjct: 91  EVKITSDKKELADFKPKF---NELIIQAPKPIECINRPSSDEPMAKLQLKISASLKQALD 150

Query: 136 ----------ITEPQ-------ICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWK 195
                     +T+          CKN GC +TF    +++  C +H G  +FH+ M+ W 
Sbjct: 151 KLKLSENDKTVTDESGEIKIGTSCKNGGCLKTFAGPQSNEEVCHYHSGVPIFHEGMKYWS 210

Query: 196 CCDVHVKEFDEFMNIPPCTKGWH 197
           CC     +F+ F+++  CTKG H
Sbjct: 211 CCRRKTSDFNTFLSLEGCTKGTH 215

[Close]

BLAST of Spo12919.1 vs. ExPASy Swiss-Prot
Match: CHRD1_HUMAN (Cysteine and histidine-rich domain-containing protein 1 OS=Homo sapiens GN=CHORDC1 PE=1 SV=2)

HSP 1 Score: 101.3 bits (251), Expect = 1.300e-20
Identity = 58/201 (28.86%), Postives = 92/201 (45.77%), Query Frame = 1


		  
Query: 16  PIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAAPSRRNPTPVPSPVSG 75
           P+FHD +K WSCCK+++ DFS F+ I GC  G H +EKP               P PV  
Sbjct: 31  PVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEKP---------------PEPVKP 90

Query: 76  PTTATSAKDTCS---RCRQGFFCSDHGSKPNPKPVDSQAAAAAEVTVTASAPP------- 135
               T  K+ C    + ++    +    +   +P   +     E+ ++AS          
Sbjct: 91  EVKTTEKKELCELKPKFQEHIIQAPKPVEAIKRPSPDEPMTNLELKISASLKQALDKLKL 150

Query: 136 -------RKAIDITEPQI---CKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCC 195
                  +K  D  E +I   CKN GC +T++ +++ +  C +H G  +FH+ M+ W CC
Sbjct: 151 SSGNEENKKEEDNDEIKIGTSCKNGGCSKTYQGLESLEEVCVYHSGVPIFHEGMKYWSCC 210

Query: 196 DVHVKEFDEFMNIPPCTKGWH 197
                +F+ F+    CTKG H
Sbjct: 211 RRKTSDFNTFLAQEGCTKGKH 216

[Close]

BLAST of Spo12919.1 vs. ExPASy Swiss-Prot
Match: CHRD1_MACFA (Cysteine and histidine-rich domain-containing protein 1 OS=Macaca fascicularis GN=CHORDC1 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.300e-20
Identity = 63/205 (30.73%), Postives = 96/205 (46.83%), Query Frame = 1


		  
Query: 16  PIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAAPSRRNPTPVPSPVSG 75
           P+FHD +K WSCCK+++ DFS F+ I GC  G H +EKP               P PV  
Sbjct: 31  PVFHDALKGWSCCKRRTTDFSDFLSIVGCTKGRHNSEKP---------------PEPVK- 90

Query: 76  PTTATSAKDTCSRCRQGFFCSDHGSKPNPKPVDSQAAAAAEVTVT-----ASAPPRKAID 135
           P   T+ K   S  +  F   +H  +  PKPV++    + +  +T      SA  ++A+D
Sbjct: 91  PEVKTTEKKELSELKPKF--QEHIIQA-PKPVEAIKRPSPDEPMTNLELKISASLKQALD 150

Query: 136 -------------------ITEPQICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRG 195
                              I     CKN GC +T++ +++ +  C +H G  +FH+ M+ 
Sbjct: 151 KLKLSSGNEEDKKEEDNDEIKIGTSCKNGGCSKTYRGLESLEEVCVYHSGVPIFHEGMKY 210

Query: 196 WKCCDVHVKEFDEFMNIPPCTKGWH 197
           W CC     +F+ F+    CTKG H
Sbjct: 211 WSCCRRKTSDFNTFLAQEGCTKGRH 216

[Close]

BLAST of Spo12919.1 vs. TAIR (Arabidopsis)
Match: AT5G51700.1 (protein binding;zinc ion binding)

HSP 1 Score: 285.8 bits (730), Expect = 2.100e-77
Identity = 129/190 (67.89%), Postives = 146/190 (76.84%), Query Frame = 1


		  
Query: 15  GPIFHDGMKEWSCCKKKSHDFSLFMDIPGCKTGTHTTEKPVLTKAAPSRRNPTPVPSPVS 74
           GP FHDGMKEWSCCK++SHDFSLF++IPGCKTG HTTEKPVL K+ P      PV +P S
Sbjct: 37  GPFFHDGMKEWSCCKQRSHDFSLFLEIPGCKTGKHTTEKPVLAKSVPKH----PVAAPTS 96

Query: 75  GPTTATSAKDTCSRCRQGFFCSDHGSKPNP--KPVDSQAAAAAEVTVTASAPP--RKAID 134
            P    + KD+CSRCRQGFFCSDHGS+P    K   +    A E  +   APP  +  ID
Sbjct: 97  SPDANAATKDSCSRCRQGFFCSDHGSQPKEQIKQTLNTPGQAEEEKIEPLAPPVQKAVID 156

Query: 135 ITEPQICKNKGCGQTFKEIDNHDAACSHHPGPAVFHDRMRGWKCCDVHVKEFDEFMNIPP 194
           I +PQ+CKNKGCGQTFKE DNH+ ACSHHPGPAVFHDR+RGWKCCDVHVKEFDEFM IPP
Sbjct: 157 INQPQVCKNKGCGQTFKERDNHETACSHHPGPAVFHDRLRGWKCCDVHVKEFDEFMEIPP 216

Query: 195 CTKGWHSADP 201
           CTKGWHS+ P
Sbjct: 217 CTKGWHSSSP 222

The following BLAST results are available for this feature:

BLAST of Spo12919.1 vs. NCBI nr
BLAST of Spo12919.1 vs. UniProtKB/TrEMBL
BLAST of Spo12919.1 vs. ExPASy Swiss-Prot
BLAST of Spo12919.1 vs. TAIR (Arabidopsis)

BLAST of Spo12919.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902217473\|gb\|KNA17735.1\|	2.4e-120	100.	hypothetical protein SOVF_0775...	[more]
gi\|870846377\|gb\|KMS98953.1\|	1.1e-93	77.7	hypothetical protein BVRB_3g06...	[more]
gi\|731363872\|ref\|XP_010693666.1\|	4.2e-88	78.7	PREDICTED: cysteine and histid...	[more]
gi\|747105736\|ref\|XP_011101143.1\|	3.7e-76	70.6	PREDICTED: cysteine and histid...	[more]
gi\|747059804\|ref\|XP_011076301.1\|	3.7e-76	68.7	PREDICTED: cysteine and histid...	[more]

BLAST of Spo12919.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RE15_SPIOL	1.7e-120	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BG33_BETVU	7.9e-94	77.7	Uncharacterized protein OS=Bet...	[more]
U5FN18_POPTR	7.4e-76	67.0	Uncharacterized protein OS=Pop...	[more]
A9PCC6_POPTR	9.7e-76	67.0	Putative uncharacterized prote...	[more]
I3SK99_LOTJA	3.7e-75	68.8	Uncharacterized protein OS=Lot...	[more]

BLAST of Spo12919.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RAR1_ARATH	3.7e-76	67.8	Cysteine and histidine-rich do...	[more]
RAR1_ORYSJ	5.1e-70	65.0	Cysteine and histidine-rich do...	[more]
CHRD1_XENLA	5.8e-21	30.5	Cysteine and histidine-rich do...	[more]
CHRD1_HUMAN	1.3e-20	28.8	Cysteine and histidine-rich do...	[more]
CHRD1_MACFA	1.3e-20	30.7	Cysteine and histidine-rich do...	[more]

BLAST of Spo12919.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G51700.1	2.1e-77	67.8	protein binding;zinc ion bindi...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007051	CHORD domain	PFAM	PF04968	CHORD	coord: 15..49 score: 8.7E-15coord: 136..196 score: 4.3
IPR007051	CHORD domain	PROFILE	PS51401	CHORD	coord: 1..49 score: 19.718coord: 137..196 score: 31
None	No IPR available	PANTHER	PTHR12621	CYSTEINE AND HISTIDINE-RICH DOMAIN CHORD -CONTAINING PROTEIN	coord: 16..196 score: 9.1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009816	defense response to bacterium, incompatible interaction
biological_process	GO:0009817	defense response to fungus, incompatible interaction
biological_process	GO:0009626	plant-type hypersensitive response
biological_process	GO:0050821	protein stabilization
biological_process	GO:0002679	respiratory burst involved in defense response
cellular_component	GO:0005634	nucleus
molecular_function	GO:0051879	Hsp90 protein binding
molecular_function	GO:0008270	zinc ion binding