Spo12939.1 (mRNA) | SpinachBase

Overview


Name	Spo12939.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Peptidoglycan-binding LysM domain protein
Location	chr3 : 1627187 .. 1627624 (-)
Sequence length	438

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCCTATAAGTCCAACCCAACGACGTATAAATGGTATCAGAGCAACCCTGGCAATAGCCGATACAGCCTCATGGTACTGTTCCCTTATCATAGTCGGGTTAATCCTGTTCATTACCTTACGAGAAGAGAATTACAACCCTTACTACGACGATAACGATGGTAGTAGTTTCTTCTCTGACAGTTTACAGACGGCGACAAATGGTGCAGGATTTCTCGAAAACCACCACCATATATGGCGGCCGCCGTGTGACGAAATCTACGTGGTGGGTGAAGGAGAGACTCTTCATACTATAAGTGATAAGTGTGGTGATCCTTTTATTGTTGAACGTAACCCTCATATTCATGATCCTGATGATGTTTTTCCTGGTCTTGTTATTAAGATTGTGCCTTCTTCTGATTCTTCTGGAAATATTAACAGAAAGTTTCTAAGGTAG

mRNA sequence

ATGGCCCCTATAAGTCCAACCCAACGACGTATAAATGGTATCAGAGCAACCCTGGCAATAGCCGATACAGCCTCATGGTACTGTTCCCTTATCATAGTCGGGTTAATCCTGTTCATTACCTTACGAGAAGAGAATTACAACCCTTACTACGACGATAACGATGGTAGTAGTTTCTTCTCTGACAGTTTACAGACGGCGACAAATGGTGCAGGATTTCTCGAAAACCACCACCATATATGGCGGCCGCCGTGTGACGAAATCTACGTGGTGGGTGAAGGAGAGACTCTTCATACTATAAGTGATAAGTGTGGTGATCCTTTTATTGTTGAACGTAACCCTCATATTCATGATCCTGATGATGTTTTTCCTGGTCTTGTTATTAAGATTGTGCCTTCTTCTGATTCTTCTGGAAATATTAACAGAAAGTTTCTAAGGTAG

Coding sequence (CDS)

ATGGCCCCTATAAGTCCAACCCAACGACGTATAAATGGTATCAGAGCAACCCTGGCAATAGCCGATACAGCCTCATGGTACTGTTCCCTTATCATAGTCGGGTTAATCCTGTTCATTACCTTACGAGAAGAGAATTACAACCCTTACTACGACGATAACGATGGTAGTAGTTTCTTCTCTGACAGTTTACAGACGGCGACAAATGGTGCAGGATTTCTCGAAAACCACCACCATATATGGCGGCCGCCGTGTGACGAAATCTACGTGGTGGGTGAAGGAGAGACTCTTCATACTATAAGTGATAAGTGTGGTGATCCTTTTATTGTTGAACGTAACCCTCATATTCATGATCCTGATGATGTTTTTCCTGGTCTTGTTATTAAGATTGTGCCTTCTTCTGATTCTTCTGGAAATATTAACAGAAAGTTTCTAAGGTAG

Protein sequence

MAPISPTQRRINGIRATLAIADTASWYCSLIIVGLILFITLREENYNPYYDDNDGSSFFSDSLQTATNGAGFLENHHHIWRPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIVPSSDSSGNINRKFLR

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo12939	Spo12939	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo12939.1	Spo12939.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12939.1.CDS.1	Spo12939.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12939.1.exon.1	Spo12939.1.exon.1	exon

Homology

[Close]

BLAST of Spo12939.1 vs. NCBI nr
Match: gi|902190450|gb|KNA11615.1| (hypothetical protein SOVF_133500 [Spinacia oleracea])

HSP 1 Score: 308.1 bits (788), Expect = 7.900e-81
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1


		  
Query: 1   MAPISPTQRRINGIRATLAIADTASWYCSLIIVGLILFITLREENYNPYYDDNDGSSFFS 60
           MAPISPTQRRINGIRATLAIADTASWYCSLIIVGLILFITLREENYNPYYDDNDGSSFFS
Sbjct: 1   MAPISPTQRRINGIRATLAIADTASWYCSLIIVGLILFITLREENYNPYYDDNDGSSFFS 60

Query: 61  DSLQTATNGAGFLENHHHIWRPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD 120
           DSLQTATNGAGFLENHHHIWRPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD
Sbjct: 61  DSLQTATNGAGFLENHHHIWRPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD 120

Query: 121 VFPGLVIKIVPSSDSSGNINRKFLR 146
           VFPGLVIKIVPSSDSSGNINRKFLR
Sbjct: 121 VFPGLVIKIVPSSDSSGNINRKFLR 145

[Close]

BLAST of Spo12939.1 vs. NCBI nr
Match: gi|731363485|ref|XP_010693458.1| (PREDICTED: uncharacterized protein LOC104906416 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 195.7 bits (496), Expect = 5.700e-47
Identity = 104/150 (69.33%), Postives = 112/150 (74.67%), Query Frame = 1


		  
Query: 1   MAPISPTQRR-----INGIRATLAIADTASWYCSLIIVGLILFITLREENYNPYYDDNDG 60
           MAP+SP QRR      NGIRATLAIADTASWYCS+IIV LILFITLR E+YN Y+DD+D 
Sbjct: 1   MAPLSPNQRRSSTSATNGIRATLAIADTASWYCSIIIVVLILFITLRAEDYNSYFDDDDD 60

Query: 61  SSFFSDSLQTATNGAGFLENHHHIWRPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHI 120
               +  +   TN      +H      PCDEIYVV EGETLHTISDKCGDPFIVERNPHI
Sbjct: 61  GGHNNLLMMKGTNSL----DHR-----PCDEIYVVSEGETLHTISDKCGDPFIVERNPHI 120

Query: 121 HDPDDVFPGLVIKIVPSSDSSGNINRKFLR 146
           HDPDDVFPGLVIKIVPS     NINRKFLR
Sbjct: 121 HDPDDVFPGLVIKIVPS--HLNNINRKFLR 139

[Close]

BLAST of Spo12939.1 vs. NCBI nr
Match: gi|870846453|gb|KMS99014.1| (hypothetical protein BVRB_3g066210 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 166.4 bits (420), Expect = 3.700e-38
Identity = 86/128 (67.19%), Postives = 95/128 (74.22%), Query Frame = 1


		  
Query: 18  LAIADTASWYCSLIIVGLILFITLREENYNPYYDDNDGSSFFSDSLQTATNGAGFLENHH 77
           +A  +TASWYCS+IIV LILFITLR E+YN Y+DD+D     +  +   TN      +H 
Sbjct: 1   MAPLNTASWYCSIIIVVLILFITLRAEDYNSYFDDDDDGGHNNLLMMKGTNSL----DHR 60

Query: 78  HIWRPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIVPSSDSSG 137
                PCDEIYVV EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIVPS     
Sbjct: 61  -----PCDEIYVVSEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIVPS--HLN 117

Query: 138 NINRKFLR 146
           NINRKFLR
Sbjct: 121 NINRKFLR 117

[Close]

BLAST of Spo12939.1 vs. NCBI nr
Match: gi|702488375|ref|XP_010035084.1| (PREDICTED: uncharacterized protein LOC104424381 [Eucalyptus grandis])

HSP 1 Score: 139.8 bits (351), Expect = 3.700e-30
Identity = 74/132 (56.06%), Postives = 89/132 (67.42%), Query Frame = 1


		  
Query: 2   APISPTQRRINGIRATLAIADTASWYCSLIIVGLILFITLREENYNPYYDDND-GSSFFS 61
           +P SP+    + +RAT+AIAD AS  C+L ++ LIL  + RE N     D N  G+    
Sbjct: 6   SPSSPSSSNKSTLRATIAIADAASSLCALFLIALILVASNRESN-----DANGIGTGDRG 65

Query: 62  DSLQTATNGAGFLENHHHIWRPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD 121
           D    +  G+ FL+        PCDEIYVVG+GETLHTISDKCGDPFIVERNPHIHDPDD
Sbjct: 66  DGQSYSLKGSQFLDR-------PCDEIYVVGDGETLHTISDKCGDPFIVERNPHIHDPDD 125

Query: 122 VFPGLVIKIVPS 133
           VFPGLVIKI P+
Sbjct: 126 VFPGLVIKITPT 125

[Close]

BLAST of Spo12939.1 vs. NCBI nr
Match: gi|848904848|ref|XP_012851994.1| (PREDICTED: uncharacterized protein LOC105971675 [Erythranthe guttata])

HSP 1 Score: 137.5 bits (345), Expect = 1.900e-29
Identity = 69/127 (54.33%), Postives = 88/127 (69.29%), Query Frame = 1


		  
Query: 11  INGIRATLAIADTASWYCSLIIVGLILFITLREENYNPYYDDNDGSSFFSDSLQTATN-G 70
           +  +++ + IAD  SWYC+++++G+IL      ENYN  YD+           +T T  G
Sbjct: 9   VKTVKSWVPIADACSWYCAVVLLGVILLGGSIGENYN--YDE-----------ETVTQVG 68

Query: 71  AGFLENHHHIWRPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 130
              +   +H+ R PCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI
Sbjct: 69  TVSVIRGNHLRRRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 122

Query: 131 VPSSDSS 137
           +  + +S
Sbjct: 129 ISPNPTS 122

[Close]

BLAST of Spo12939.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWJ8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_133500 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 5.500e-81
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 1


		  
Query: 1   MAPISPTQRRINGIRATLAIADTASWYCSLIIVGLILFITLREENYNPYYDDNDGSSFFS 60
           MAPISPTQRRINGIRATLAIADTASWYCSLIIVGLILFITLREENYNPYYDDNDGSSFFS
Sbjct: 1   MAPISPTQRRINGIRATLAIADTASWYCSLIIVGLILFITLREENYNPYYDDNDGSSFFS 60

Query: 61  DSLQTATNGAGFLENHHHIWRPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD 120
           DSLQTATNGAGFLENHHHIWRPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD
Sbjct: 61  DSLQTATNGAGFLENHHHIWRPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD 120

Query: 121 VFPGLVIKIVPSSDSSGNINRKFLR 146
           VFPGLVIKIVPSSDSSGNINRKFLR
Sbjct: 121 VFPGLVIKIVPSSDSSGNINRKFLR 145

[Close]

BLAST of Spo12939.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BCF5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g066210 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.600e-38
Identity = 86/128 (67.19%), Postives = 95/128 (74.22%), Query Frame = 1


		  
Query: 18  LAIADTASWYCSLIIVGLILFITLREENYNPYYDDNDGSSFFSDSLQTATNGAGFLENHH 77
           +A  +TASWYCS+IIV LILFITLR E+YN Y+DD+D     +  +   TN      +H 
Sbjct: 1   MAPLNTASWYCSIIIVVLILFITLRAEDYNSYFDDDDDGGHNNLLMMKGTNSL----DHR 60

Query: 78  HIWRPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIVPSSDSSG 137
                PCDEIYVV EGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIVPS     
Sbjct: 61  -----PCDEIYVVSEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIVPS--HLN 117

Query: 138 NINRKFLR 146
           NINRKFLR
Sbjct: 121 NINRKFLR 117

[Close]

BLAST of Spo12939.1 vs. UniProtKB/TrEMBL
Match: A0A058ZZ69_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00211 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.600e-30
Identity = 74/132 (56.06%), Postives = 89/132 (67.42%), Query Frame = 1


		  
Query: 2   APISPTQRRINGIRATLAIADTASWYCSLIIVGLILFITLREENYNPYYDDND-GSSFFS 61
           +P SP+    + +RAT+AIAD AS  C+L ++ LIL  + RE N     D N  G+    
Sbjct: 6   SPSSPSSSNKSTLRATIAIADAASSLCALFLIALILVASNRESN-----DANGIGTGDRG 65

Query: 62  DSLQTATNGAGFLENHHHIWRPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDD 121
           D    +  G+ FL+        PCDEIYVVG+GETLHTISDKCGDPFIVERNPHIHDPDD
Sbjct: 66  DGQSYSLKGSQFLDR-------PCDEIYVVGDGETLHTISDKCGDPFIVERNPHIHDPDD 125

Query: 122 VFPGLVIKIVPS 133
           VFPGLVIKI P+
Sbjct: 126 VFPGLVIKITPT 125

[Close]

BLAST of Spo12939.1 vs. UniProtKB/TrEMBL
Match: A0A022QBQ5_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a024197mg PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.300e-29
Identity = 69/127 (54.33%), Postives = 88/127 (69.29%), Query Frame = 1


		  
Query: 11  INGIRATLAIADTASWYCSLIIVGLILFITLREENYNPYYDDNDGSSFFSDSLQTATN-G 70
           +  +++ + IAD  SWYC+++++G+IL      ENYN  YD+           +T T  G
Sbjct: 9   VKTVKSWVPIADACSWYCAVVLLGVILLGGSIGENYN--YDE-----------ETVTQVG 68

Query: 71  AGFLENHHHIWRPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 130
              +   +H+ R PCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI
Sbjct: 69  TVSVIRGNHLRRRPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKI 122

Query: 131 VPSSDSS 137
           +  + +S
Sbjct: 129 ISPNPTS 122

[Close]

BLAST of Spo12939.1 vs. UniProtKB/TrEMBL
Match: B9IC84_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s07390g PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.200e-29
Identity = 69/114 (60.53%), Postives = 80/114 (70.18%), Query Frame = 1


		  
Query: 19  AIADTASWYCSLIIVGLILFITLREENYNPYYDDNDGSSFFSDSLQTATNGAGFLENHHH 78
           +IAD A+WYC+L+++ LILF +LRE +  P YDD+    F       A  G   L+    
Sbjct: 15  SIADAATWYCALVLLALILFTSLREAS--PTYDDDHHHDF------VAVKGNQILDR--- 74

Query: 79  IWRPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIVPS 133
               PCDEIYVV EGETLHTISDKCGDPFIVE NPHIHDPDDV+PGLVIKI PS
Sbjct: 75  ----PCDEIYVVKEGETLHTISDKCGDPFIVEENPHIHDPDDVYPGLVIKITPS 113

[Close]

BLAST of Spo12939.1 vs. TAIR (Arabidopsis)
Match: AT5G62150.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 112.1 bits (279), Expect = 2.900e-25
Identity = 55/111 (49.55%), Postives = 72/111 (64.86%), Query Frame = 1


		  
Query: 21  ADTASWYCSLIIVGLILFITLREENYNPYYDDNDGSSFFSDSLQTATNGAGFLENHHHIW 80
           +D ++W  +++++ LIL +++RE N +   +   GS F +                    
Sbjct: 9   SDMSAWCSAVVLLSLILLLSVRENNAS---NSIRGSQFSTK------------------- 68

Query: 81  RPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIVP 132
             PC+EIY+VGEGETLHTI DKCGDPFIVERNPHIHDPDDVFPGLV+KI P
Sbjct: 69  --PCEEIYIVGEGETLHTIGDKCGDPFIVERNPHIHDPDDVFPGLVLKIAP 95

[Close]

BLAST of Spo12939.1 vs. TAIR (Arabidopsis)
Match: AT3G52790.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 105.1 bits (261), Expect = 3.600e-23
Identity = 53/120 (44.17%), Postives = 73/120 (60.83%), Query Frame = 1


		  
Query: 13  GIRATLAIADTASWYCSLIIVGLILFITLREENYNPYYDDNDGSSFFSDSLQTATNGAGF 72
           G  +++A+A+  SWYC++    ++L         N +    +GS+   +  Q +    G+
Sbjct: 2   GKSSSMAVAEKISWYCAVFAAMMLLM--------NSFQVAQEGSTEIVEKQQPSMMITGY 61

Query: 73  LENHHHIWRPPCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVIKIVPS 132
                   RP CDEIY V EGETL TIS+KCGDP+IVE NPHIHD DD+FPGL+I+I PS
Sbjct: 62  SHR-----RPACDEIYEVKEGETLQTISEKCGDPYIVEGNPHIHDHDDLFPGLLIRITPS 108

[Close]

BLAST of Spo12939.1 vs. TAIR (Arabidopsis)
Match: AT4G25433.1 (peptidoglycan-binding LysM domain-containing protein)

HSP 1 Score: 101.7 bits (252), Expect = 4.000e-22
Identity = 54/122 (44.26%), Postives = 76/122 (62.30%), Query Frame = 1


		  
Query: 14  IRATLAIADTASWYCSLIIVGLILFITLREENYNPYYDDNDGSSFFSDSLQTATNGAGFL 73
           IR T++ ++T + YC + ++ L L  +++        + N G S           G  + 
Sbjct: 2   IRVTVSRSNTVASYCLVALLILTLAGSVK--------NSNGGGS-----------GEYYR 61

Query: 74  ENHHHIWRP------PCDEIYVVGEGETLHTISDKCGDPFIVERNPHIHDPDDVFPGLVI 130
             +  +WR       PC+E+YVVGEG+TLH+IS+KCGDPFIVERNPHIHDPDDVFPGL+I
Sbjct: 62  GRNCEVWRGKQMMERPCEELYVVGEGDTLHSISEKCGDPFIVERNPHIHDPDDVFPGLLI 104

The following BLAST results are available for this feature:

BLAST of Spo12939.1 vs. NCBI nr
BLAST of Spo12939.1 vs. UniProtKB/TrEMBL
BLAST of Spo12939.1 vs. ExPASy Swiss-Prot
BLAST of Spo12939.1 vs. TAIR (Arabidopsis)

BLAST of Spo12939.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902190450\|gb\|KNA11615.1\|	7.9e-81	100.	hypothetical protein SOVF_1335...	[more]
gi\|731363485\|ref\|XP_010693458.1\|	5.7e-47	69.3	PREDICTED: uncharacterized pro...	[more]
gi\|870846453\|gb\|KMS99014.1\|	3.7e-38	67.1	hypothetical protein BVRB_3g06...	[more]
gi\|702488375\|ref\|XP_010035084.1\|	3.7e-30	56.0	PREDICTED: uncharacterized pro...	[more]
gi\|848904848\|ref\|XP_012851994.1\|	1.9e-29	54.3	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo12939.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QWJ8_SPIOL	5.5e-81	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BCF5_BETVU	2.6e-38	67.1	Uncharacterized protein OS=Bet...	[more]
A0A058ZZ69_EUCGR	2.6e-30	56.0	Uncharacterized protein OS=Euc...	[more]
A0A022QBQ5_ERYGU	1.3e-29	54.3	Uncharacterized protein OS=Ery...	[more]
B9IC84_POPTR	2.2e-29	60.5	Uncharacterized protein OS=Pop...	[more]

BLAST of Spo12939.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo12939.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT5G62150.1	2.9e-25	49.5	peptidoglycan-binding LysM dom...	[more]
AT3G52790.1	3.6e-23	44.1	peptidoglycan-binding LysM dom...	[more]
AT4G25433.1	4.0e-22	44.2	peptidoglycan-binding LysM dom...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018392	LysM domain	PFAM	PF01476	LysM	coord: 88..129 score: 2.
None	No IPR available	PANTHER	PTHR33648	FAMILY NOT NAMED	coord: 5..62 score: 1.0E-54coord: 78..145 score: 1.0
None	No IPR available	PANTHER	PTHR33648:SF1	SUBFAMILY NOT NAMED	coord: 78..145 score: 1.0E-54coord: 5..62 score: 1.0