Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATTTTAGAACAGAAACTGAATTTTCACTTAACACTCACGTCCTTTTAATGTCATACCATATGGTCCAACATATTATTATTGTTATTATTGTTACAAAAAAAATTAAAATAAAGCCATTTCTGTTGCTGATCAGGACATATCACAAAGATCATTCGATCTGGATTTCTAGCACATTCATTCTCTTTTTCACTCCCAAATCTTTTATTTCTAGCAAAATAATATAAATATCTTATATTTTGTGGGCCCACCCTATACTCTAGTCCATTTATTAATTAACACGTACACACTAAAAAAGAACATTTAAGAAACTCCAAAAATAAAAATAAAATAAAATAATAAAATCAACGGAAGTTTCTCGAAAGCAATAAACGTAGCTTCTCCTCCTTTCCTTTCCTTCCTACCCAATATCTTCCCCTATCTTCTTCCATTTTCTCTCTCCTCTACTCTTTACCAGACAATTCCATTTACAGATCTTCATCTTTTTCCTTTTTCTGCCCAAAAATTGATTTCCAACCTTTTTAGAGGTATATTCTGTGATTATTCGTACGATTAATCATTAATTTAGTTGAAAAAAGTTGATTATTTGAGGAGAAGTGGTTAGTGGTTACCGGCGATGGCGGGAGATGAACACGCCGCCGAGAATGGAGGTGGTGGCGGTGGAAGCGGCGGTGATTGTCAACGGTCAATTCCGACGCCATTTTTGACTAAGACGTATCAACTCGTTGAAGATCCTTCCATTGATGACGTAGTTTCATGGAATGATGACGGATCTAGCTTCGTCGTTTGGAATCCTACGGTTTTCGCTCGCGATTTACTCCCTCGCTATTTCAAGCATAACAATTTCTCCTCCTTCGTTCGTCAGCTCAACACCTACGTAAGCATCAAATTATTGATTAAGATTAATTGATTCTCAATTCAATCATATCATATCATATCATATCATATCATACAACCAAATCTTCATTGAATTATTGAATTCGCCTTAATTAATTTCGTTTAATTCTGCACTTTTATTTTAGGGATTTCGAAAAGTAGTACCAGACCGATGGGAGTTCACAAACGAATCATTCCGACGAGGAGAGAAGCAGCTCCTCTGCGAAATACAACGCCGTAAAACGACAACAACGGCGGTAACACCGGCGGCGCAACCACAAGTTTCACCAGGAGATTCCGGCGAAGAGCAGGTAATATCGAATTCTCCGCCATTAGGAATTCCGACTTCAGTTTATTGCAACATCAACAACAATAATTCTAGCAGTAGCAGCAACAACAGAGTAGAATTAATAGACGAAAACGAGAGATTGAGGAGAGAAAATATGGAGCTAAACAAAGAGCTAACAAACATGAAGACGCTATGCAACAACATCTTCTCCTTGATGACGAACTTCGCAACTTCTCAAGGGAATACTACAGCTACGAGTAGTAGCACCAATTGTATGAGACAGGCGCTGGATTTGCTGCCACGTAAGGAGTTGGAGGTCGTCGTTGACGTTGAGCGACCAAAGTCACCCAAGATCTTCGGTGTAGCTATTGGGATGAAGAAGAGAGGGAGAGGTGAAGGAGAAGGAGATGGGGAAGGTTTTGGTGTGACGCGGGTGCAGGGTGATATGATGGAGACGGATGTGGAGATTAAATGTGAGCCGTTGGATGGAAATGGTGAGATTGATGATGATGAAAATCAGGAAACTCCTTGGCTTAAACAGTGTCACCGACAAAATCAGAGGGTGTGTAATTGATCCCATCATGATTAGAATTTAGAGTATCACGTGATGGAATTTTGTGTCACGTGCTTGTGGAGGAAGTTACTGTGTTTGGTTTCCGATTTTGCCCCTGGTTTGTAAGGTTATTTAGCGATGTGCCCCCTATGTACAATTGGGGGCCCAATTAGTTACTACAACTACTACCCCAATGGGCCTGAATATGGGCATATTTCTAAATTTGGGTGGGGTTGATGATCTGTGAGGCTTTTAGAGTTTTAGCTGAGTGTAGAAACAAAATAAAGAGTTCAAAATTAATTTTGTATGAGAGTGCACGTGATGGAATTTTGTGACACGTGCTTGTGGAGAAAGTTTGGTTTCCGATTTTGCCCCTGGTTTGTAAGGTGCCCCCTCTTGGGGGCCCAATTAGGAATACCCCAATGGGCCTGTAAATGGGCATGTTTCTAAATTTGGGTGGGGGTGATGATCTGTGAGGCTTTTAGAGTTTTAGCTGAATGTAGAAATAAAAATAAAGAGTTTAAAATTAATGGCTATGAATCTATGATGATATTCATAACTTTGTTCCTTTGTGGGTTTTGTTCAAGAATATCAAGATCATGTGGACGGATTTAAACAATCTTGATAACAAATTTTGTCACCAAACTAGATATGGATATGCGTGTGATGTCACTCATTTTTTTCCCGGA TATTTTAGAACAGAAACTGAATTTTCACTTAACACTCACGTCCTTTTAATGTCATACCATATGGTCCAACATATTATTATTGTTATTATTGTTACAAAAAAAATTAAAATAAAGCCATTTCTGTTGCTGATCAGGACATATCACAAAGATCATTCGATCTGGATTTCTAGCACATTCATTCTCTTTTTCACTCCCAAATCTTTTATTTCTAGCAAAATAATATAAATATCTTATATTTTGTGGGCCCACCCTATACTCTAGTCCATTTATTAATTAACACGTACACACTAAAAAAGAACATTTAAGAAACTCCAAAAATAAAAATAAAATAAAATAATAAAATCAACGGAAGTTTCTCGAAAGCAATAAACGTAGCTTCTCCTCCTTTCCTTTCCTTCCTACCCAATATCTTCCCCTATCTTCTTCCATTTTCTCTCTCCTCTACTCTTTACCAGACAATTCCATTTACAGATCTTCATCTTTTTCCTTTTTCTGCCCAAAAATTGATTTCCAACCTTTTTAGAGGTATATTCTGTGATTATTCGTACGATTAATCATTAATTTAGTTGAAAAAAGTTGATTATTTGAGGAGAAGTGGTTAGTGGTTACCGGCGATGGCGGGAGATGAACACGCCGCCGAGAATGGAGGTGGTGGCGGTGGAAGCGGCGGTGATTGTCAACGGTCAATTCCGACGCCATTTTTGACTAAGACGTATCAACTCGTTGAAGATCCTTCCATTGATGACGTAGTTTCATGGAATGATGACGGATCTAGCTTCGTCGTTTGGAATCCTACGGTTTTCGCTCGCGATTTACTCCCTCGCTATTTCAAGCATAACAATTTCTCCTCCTTCGTTCGTCAGCTCAACACCTACGGATTTCGAAAAGTAGTACCAGACCGATGGGAGTTCACAAACGAATCATTCCGACGAGGAGAGAAGCAGCTCCTCTGCGAAATACAACGCCGTAAAACGACAACAACGGCGGTAACACCGGCGGCGCAACCACAAGTTTCACCAGGAGATTCCGGCGAAGAGCAGGTAATATCGAATTCTCCGCCATTAGGAATTCCGACTTCAGTTTATTGCAACATCAACAACAATAATTCTAGCAGTAGCAGCAACAACAGAGTAGAATTAATAGACGAAAACGAGAGATTGAGGAGAGAAAATATGGAGCTAAACAAAGAGCTAACAAACATGAAGACGCTATGCAACAACATCTTCTCCTTGATGACGAACTTCGCAACTTCTCAAGGGAATACTACAGCTACGAGTAGTAGCACCAATTGTATGAGACAGGCGCTGGATTTGCTGCCACGTAAGGAGTTGGAGGTCGTCGTTGACGTTGAGCGACCAAAGTCACCCAAGATCTTCGGTGTAGCTATTGGGATGAAGAAGAGAGGGAGAGGTGAAGGAGAAGGAGATGGGGAAGGTTTTGGTGTGACGCGGGTGCAGGGTGATATGATGGAGACGGATGTGGAGATTAAATGTGAGCCGTTGGATGGAAATGGTGAGATTGATGATGATGAAAATCAGGAAACTCCTTGGCTTAAACAGTGTCACCGACAAAATCAGAGGGTGTGTAATTGATCCCATCATGATTAGAATTTAGAGTATCACGTGATGGAATTTTGTGTCACGTGCTTGTGGAGGAAGTTACTGTGTTTGGTTTCCGATTTTGCCCCTGGTTTGTAAGGTTATTTAGCGATGTGCCCCCTATGTACAATTGGGGGCCCAATTAGTTACTACAACTACTACCCCAATGGGCCTGAATATGGGCATATTTCTAAATTTGGGTGGGGTTGATGATCTGTGAGGCTTTTAGAGTTTTAGCTGAGTGTAGAAACAAAATAAAGAGTTCAAAATTAATTTTGTATGAGAGTGCACGTGATGGAATTTTGTGACACGTGCTTGTGGAGAAAGTTTGGTTTCCGATTTTGCCCCTGGTTTGTAAGGTGCCCCCTCTTGGGGGCCCAATTAGGAATACCCCAATGGGCCTGTAAATGGGCATGTTTCTAAATTTGGGTGGGGGTGATGATCTGTGAGGCTTTTAGAGTTTTAGCTGAATGTAGAAATAAAAATAAAGAGTTTAAAATTAATGGCTATGAATCTATGATGATATTCATAACTTTGTTCCTTTGTGGGTTTTGTTCAAGAATATCAAGATCATGTGGACGGATTTAAACAATCTTGATAACAAATTTTGTCACCAAACTAGATATGGATATGCGTGTGATGTCACTCATTTTTTTCCCGGA ATGGCGGGAGATGAACACGCCGCCGAGAATGGAGGTGGTGGCGGTGGAAGCGGCGGTGATTGTCAACGGTCAATTCCGACGCCATTTTTGACTAAGACGTATCAACTCGTTGAAGATCCTTCCATTGATGACGTAGTTTCATGGAATGATGACGGATCTAGCTTCGTCGTTTGGAATCCTACGGTTTTCGCTCGCGATTTACTCCCTCGCTATTTCAAGCATAACAATTTCTCCTCCTTCGTTCGTCAGCTCAACACCTACGGATTTCGAAAAGTAGTACCAGACCGATGGGAGTTCACAAACGAATCATTCCGACGAGGAGAGAAGCAGCTCCTCTGCGAAATACAACGCCGTAAAACGACAACAACGGCGGTAACACCGGCGGCGCAACCACAAGTTTCACCAGGAGATTCCGGCGAAGAGCAGGTAATATCGAATTCTCCGCCATTAGGAATTCCGACTTCAGTTTATTGCAACATCAACAACAATAATTCTAGCAGTAGCAGCAACAACAGAGTAGAATTAATAGACGAAAACGAGAGATTGAGGAGAGAAAATATGGAGCTAAACAAAGAGCTAACAAACATGAAGACGCTATGCAACAACATCTTCTCCTTGATGACGAACTTCGCAACTTCTCAAGGGAATACTACAGCTACGAGTAGTAGCACCAATTGTATGAGACAGGCGCTGGATTTGCTGCCACGTAAGGAGTTGGAGGTCGTCGTTGACGTTGAGCGACCAAAGTCACCCAAGATCTTCGGTGTAGCTATTGGGATGAAGAAGAGAGGGAGAGGTGAAGGAGAAGGAGATGGGGAAGGTTTTGGTGTGACGCGGGTGCAGGGTGATATGATGGAGACGGATGTGGAGATTAAATGTGAGCCGTTGGATGGAAATGGTGAGATTGATGATGATGAAAATCAGGAAACTCCTTGGCTTAAACAGTGTCACCGACAAAATCAGAGGGTGTGTAATTGA MAGDEHAAENGGGGGGSGGDCQRSIPTPFLTKTYQLVEDPSIDDVVSWNDDGSSFVVWNPTVFARDLLPRYFKHNNFSSFVRQLNTYGFRKVVPDRWEFTNESFRRGEKQLLCEIQRRKTTTTAVTPAAQPQVSPGDSGEEQVISNSPPLGIPTSVYCNINNNNSSSSSNNRVELIDENERLRRENMELNKELTNMKTLCNNIFSLMTNFATSQGNTTATSSSTNCMRQALDLLPRKELEVVVDVERPKSPKIFGVAIGMKKRGRGEGEGDGEGFGVTRVQGDMMETDVEIKCEPLDGNGEIDDDENQETPWLKQCHRQNQRVCN Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo12958.1 vs. NCBI nr
Match: gi|902212788|gb|KNA17086.1| (hypothetical protein SOVF_083250 [Spinacia oleracea]) HSP 1 Score: 649.8 bits (1675), Expect = 2.500e-183 Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 1
BLAST of Spo12958.1 vs. NCBI nr
Match: gi|731363521|ref|XP_010693477.1| (PREDICTED: heat stress transcription factor B-2a [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 442.6 bits (1137), Expect = 6.000e-121 Identity = 242/332 (72.89%), Postives = 271/332 (81.63%), Query Frame = 1
BLAST of Spo12958.1 vs. NCBI nr
Match: gi|1012178137|ref|XP_015967448.1| (PREDICTED: heat stress transcription factor B-2b-like [Arachis duranensis]) HSP 1 Score: 323.9 bits (829), Expect = 3.100e-85 Identity = 194/371 (52.29%), Postives = 231/371 (62.26%), Query Frame = 1
BLAST of Spo12958.1 vs. NCBI nr
Match: gi|596014572|ref|XP_007218740.1| (hypothetical protein PRUPE_ppa009180mg [Prunus persica]) HSP 1 Score: 308.5 bits (789), Expect = 1.400e-80 Identity = 180/333 (54.05%), Postives = 219/333 (65.77%), Query Frame = 1
BLAST of Spo12958.1 vs. NCBI nr
Match: gi|1021521674|ref|XP_016204226.1| (PREDICTED: heat stress transcription factor B-2b-like [Arachis ipaensis]) HSP 1 Score: 306.6 bits (784), Expect = 5.200e-80 Identity = 179/349 (51.29%), Postives = 217/349 (62.18%), Query Frame = 1
BLAST of Spo12958.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RC68_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_083250 PE=3 SV=1) HSP 1 Score: 649.8 bits (1675), Expect = 1.700e-183 Identity = 325/325 (100.00%), Postives = 325/325 (100.00%), Query Frame = 1
BLAST of Spo12958.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BCG9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g066350 PE=3 SV=1) HSP 1 Score: 442.6 bits (1137), Expect = 4.200e-121 Identity = 242/332 (72.89%), Postives = 271/332 (81.63%), Query Frame = 1
BLAST of Spo12958.1 vs. UniProtKB/TrEMBL
Match: M5X1X7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009180mg PE=3 SV=1) HSP 1 Score: 308.5 bits (789), Expect = 9.500e-81 Identity = 180/333 (54.05%), Postives = 219/333 (65.77%), Query Frame = 1
BLAST of Spo12958.1 vs. UniProtKB/TrEMBL
Match: A0A075QTR8_GOSHI (HSF20 OS=Gossypium hirsutum GN=HSF20 PE=2 SV=1) HSP 1 Score: 305.4 bits (781), Expect = 8.000e-80 Identity = 180/336 (53.57%), Postives = 223/336 (66.37%), Query Frame = 1
BLAST of Spo12958.1 vs. UniProtKB/TrEMBL
Match: A0A061G175_THECC (Heat shock transcription factor B2A, putative OS=Theobroma cacao GN=TCM_015119 PE=3 SV=1) HSP 1 Score: 305.1 bits (780), Expect = 1.000e-79 Identity = 178/324 (54.94%), Postives = 220/324 (67.90%), Query Frame = 1
BLAST of Spo12958.1 vs. ExPASy Swiss-Prot
Match: HFB2A_ARATH (Heat stress transcription factor B-2a OS=Arabidopsis thaliana GN=HSFB2A PE=2 SV=1) HSP 1 Score: 276.2 bits (705), Expect = 4.700e-73 Identity = 160/317 (50.47%), Postives = 216/317 (68.14%), Query Frame = 1
BLAST of Spo12958.1 vs. ExPASy Swiss-Prot
Match: HFB2B_ORYSJ (Heat stress transcription factor B-2b OS=Oryza sativa subsp. japonica GN=HSFB2B PE=2 SV=1) HSP 1 Score: 249.6 bits (636), Expect = 4.700e-65 Identity = 163/348 (46.84%), Postives = 205/348 (58.91%), Query Frame = 1
BLAST of Spo12958.1 vs. ExPASy Swiss-Prot
Match: HFB2B_ARATH (Heat stress transcription factor B-2b OS=Arabidopsis thaliana GN=HSFB2B PE=2 SV=1) HSP 1 Score: 246.9 bits (629), Expect = 3.000e-64 Identity = 156/340 (45.88%), Postives = 205/340 (60.29%), Query Frame = 1
BLAST of Spo12958.1 vs. ExPASy Swiss-Prot
Match: HFB2C_ORYSJ (Heat stress transcription factor B-2c OS=Oryza sativa subsp. japonica GN=HSFB2C PE=2 SV=1) HSP 1 Score: 227.3 bits (578), Expect = 2.500e-58 Identity = 149/357 (41.74%), Postives = 193/357 (54.06%), Query Frame = 1
BLAST of Spo12958.1 vs. ExPASy Swiss-Prot
Match: HSF24_SOLPE (Heat shock factor protein HSF24 OS=Solanum peruvianum GN=HSF24 PE=2 SV=1) HSP 1 Score: 187.2 bits (474), Expect = 2.900e-46 Identity = 129/329 (39.21%), Postives = 182/329 (55.32%), Query Frame = 1
BLAST of Spo12958.1 vs. TAIR (Arabidopsis)
Match: AT5G62020.1 (heat shock transcription factor B2A) HSP 1 Score: 276.2 bits (705), Expect = 2.600e-74 Identity = 160/317 (50.47%), Postives = 216/317 (68.14%), Query Frame = 1
BLAST of Spo12958.1 vs. TAIR (Arabidopsis)
Match: AT4G11660.1 (winged-helix DNA-binding transcription factor family protein) HSP 1 Score: 246.9 bits (629), Expect = 1.700e-65 Identity = 156/340 (45.88%), Postives = 205/340 (60.29%), Query Frame = 1
BLAST of Spo12958.1 vs. TAIR (Arabidopsis)
Match: AT1G46264.1 (heat shock transcription factor B4) HSP 1 Score: 176.8 bits (447), Expect = 2.200e-44 Identity = 107/222 (48.20%), Postives = 134/222 (60.36%), Query Frame = 1
BLAST of Spo12958.1 vs. TAIR (Arabidopsis)
Match: AT4G36990.1 (heat shock factor 4) HSP 1 Score: 171.8 bits (434), Expect = 7.000e-43 Identity = 92/191 (48.17%), Postives = 122/191 (63.87%), Query Frame = 1
BLAST of Spo12958.1 vs. TAIR (Arabidopsis)
Match: AT3G02990.1 (heat shock transcription factor A1E) HSP 1 Score: 151.0 bits (380), Expect = 1.300e-36 Identity = 75/116 (64.66%), Postives = 84/116 (72.41%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12958.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12958.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12958.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo12958.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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