Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATCGAGCCCTACACAACACATAAACACATATCAAAATCGACACAAAATAAAACACGAACGCACCTCGTAGCCCTAATTGAACTGAAAAAATGTTCCTCTTTAACTCATTGATTTGACTTTGACGGTCTCACCTGCCTACTATTCAAGTACCCTCGTAATTCAAACTGCGACACATACCCAACTCAAACCTGACACAACACTCACAAACACGGGTCAAATTCTCAAACTACGACACAAACCCAACTCAAACCTAACACAACACTCACAAACACGGGTCAAATTCTAAAACTACGACACATACCCAATTCAAACCTGACACAACACTCACAAACACGAGTCAAATTCTCAAACTACGACACATACCCAACTCAAACCTGACACAACACTCATAAACACGGGTCAAATTCTCAAATTACGACACATACCCAACTCAAACCTGACACGACACTCACAAACATGTGTCAAACTCGACACAAAATCAAACACGAACACACTCTTGAACCTCGTGGGATTGACTCTCATCTACCTATTCAACTGCCCAAGTTCCAACCCACCAATAAACCATCTATCTGTTCTCCCATTCTCCCACCTCCATCCGGCCATCCATCTTCATCACTCTCCTCACCAAATCCCAACACTTTTTCTCTCTCCTCAATCCTCATAAGTCAGAGAGTCACAGACCCCAAATTCAACCCGAACTCTCACAAATTCACAATTAACACACACCTTCTTCAACCTCAACAACCCCTCCATCCTCAAAACCTCACAAAAAATGGCTCTGGAATTATGGGGAACACTCAAAGAAGCAATCACAACATACACAGGTCTTTCTCCAACAACTTTCTTCACTGTAGTTGTTTTAAGTTTAGCCTTTTACCATATGGTTTTTGGGTTGTTTGGATCAACCCCTTCTCCGCATCAACGCCATAGGTCTATGGAGGAAGAGATGGAGCCCTTGCCACCACCGGTTCAGCTTGGGGAGATTGAGGAAGATGAGTTGAAACTCTATGATGGCACTGATCCCAAGAAACCCTTGCTTATGGCTATTAAGGGTCAGATCTACGATGTTTCCCAGAGCAGGTCTAATTTCAATTTTAATTTTAATTTCTTTCTAATGTTTTGTTCTTGGTATTTTAAGTTCTGTGTTGCTGAAATTAGCTGGGGTTTTTGTGATCTGAACTGGGTTAATTCAATTTTTTTAGGGTTTGACTGATTTAGGGTTTTAGTAGCTTTGCATGAAGGTAATATGTTTGATCTTGTGGTTAATTGAAGTTTAAAGTTCTGAACTTTGATAATTTGTGGGTTTCAATTGGGTCAATTAGCTTTTGGGGGACTTTTATTTGTGTGTATCTTTAACTGAGTTTTCTTTGGCTGCCAATTGTTGGGGTTTAGGTATGGCTTAATCTTGTTGTTTTTCATAGGTTTAATTAGTTTCTGGAGTTAAATTTGTGTTTTCATGGTGTTGAAGTTGAAGATACAGTTTTCTGGGATTTGGCAGCTGGATAAGTGGAGAGTGTTATGTGGATTTTTATTTGTTAATCAGTGTGCTGTGGAAGTGTTGATCATAATCCTTGTTTCTGATGTGTTAACTATGGGTGTTTGAAGTCTGGAAATGAATCATATAATGCACAAGTACAAGCTTATCATATAATGCACCACTGTTTTGTTTTCCATTTTCTCTTCCCTAGTTTGTGTTAGACTTTATTGGTAGAAATGTGTTGTTTAGCGGTGTATCTAGCGCCTTTTAAAAGATTAGGGAATCTGAAAAGCACTGGAAAAGGATTTTGGTGGAAGAGTTAAAGAAAAGACAGTAACTTTGTATACTCATATGACTTTCTTTCTCAAAAGATCAGATTATTGAGTAGAATTTGACATTCATTATATGGATGAGGGTAGGTAGTGGATGAAAAAGCCTCCCTTCTTGTTTTGAGTCTTTTGATTGACAAGGGTAAGTTGCACAACTTGCACAGAGTTATAACCCTCCATCCTCACGCACTTCACCAGTAGCGGAATTCTGATACCGTTGTTAGTTGAACCAGTAACCTTTAAATCATATTCAGCCTAAAGTCTCATCCTTTTTTCACTTTTTAATTGCTTTGTTTGTCACTGGAATTGATTCTGCAACTGTTACCGATAACTGCTTTGTTCATCACTGGTTTGTTCTGCTCCTTGACAGTCATTTGGGTTCTAGACTGATAAAGTAATGCTTCCTTTTCAACTTAAACATAGATTTGTGCCACTTCCCAAAAGCAGAAAGGGATCTTATATATTCCTTTTACGGTTTTACCACTTTATTTGAGAATAACTAACTTTTGGATATTGCTTTTATAAAATTGAATCACCCAACTTTTTTTTGCTTCTTTTCAACCTCCCATTTACATAACCATGCGTCTGCAAATCTGTAGTACACGCTGTTCTGATGATACCCTTTTTCTGATGCTATACACCTTGTGAATCATGAAAAATAAGTGAATTCAAACTGCTGGTTGCTCTCCTTGCTTCTTTGTTTTGTTTGTCTAGGTTTTTTTTTGTTTTTTTCCTGGTTTAGTTTAATCTTGCTGGCTGCTGTTTCGGTTTTTCTCGTGGAGTTTCGTTTTGTACGCACTCTTTGCTATTCAAGTGCCTTATCTTCATTTAAGCATATAACTGGTATTCATTGTGCAAATTCTATTTCTTTTCTTCACTGGAGTGAAGTAAATGCCTAAGTATATGCACCTATCTATAGGATCTTTTAGAATATTGTGGATGACATTGCAACTGTCAAGATCTTTGAGCATTCCCGAAACATTTCTGAGATTCACCCTTTTCCATTCCATATAAATACCATAACTGGTGCTATGCAACGAACTATGTGTGCTAACATCCGTGTTGTTCCAGGATGTTCTATGGTCCAGGTGGGCCCTACGCTTTATTCGCCGGCAAAGACGCCAGCCGAGCTCTAGCCAAGATGTCGTTCGAAGATAGCGATTTGACAGGGGATATTTCCGGCCTTGGTCCTTTCGAGCTCGATGCACTACAAGACTGGGAATACAAGTTTATGAGTAAATATGTTAAGGTCGGAACTATTAAGTCAAAGGATGCTCCGGTAACTGATGTATCCTCTCCTACCGAAGCAGCCGAAGCTACTGACGGCGTGTCAGAGAAGCCTGAAGCAGAGACTGTAGAGACACCGGCTACCGATGCTGAGAATAAAGACGAGTAAAACAAACAAAAAACTATGCCGTTGGCTGTATACCGAGTTTTGGAAGAAAAAAAAAAGTTTTTAAGAAGCATGGAAAAAGATATAGAAGGGGGGGCTAAGTAGGTTTGGGGTTAAAGAAGTGTGGAATGATGTGATAAATTGGATCCTTGTTACAAGAACTTGTTTACTTGAATTGCTATTGTAAATAAGCATGCTTGTCTGTGGACTCCATTGAATAAGTTTGATGGTAATACAGCTGAAATTGTTGCAATCTCTCTTTTATTTGGCTTATGTAAGATGGTTGTGAGTTGGGCTGGGCTGGGCTAAGCTTTGTGTTGAGCCCACGTGTTTTCGGTGAACAGGGCCGACTCACGCCAAATCCACTTATTTCATATGGGTTGGCTGTATCGAAATTTTCAAAAAAAATGGCCTAGGCACGGCCCAAACCACGTACCCTCGTGTTGGGTCGG AATCGAGCCCTACACAACACATAAACACATATCAAAATCGACACAAAATAAAACACGAACGCACCTCGTAGCCCTAATTGAACTGAAAAAATGTTCCTCTTTAACTCATTGATTTGACTTTGACGGTCTCACCTGCCTACTATTCAAGTACCCTCGTAATTCAAACTGCGACACATACCCAACTCAAACCTGACACAACACTCACAAACACGGGTCAAATTCTCAAACTACGACACAAACCCAACTCAAACCTAACACAACACTCACAAACACGGGTCAAATTCTAAAACTACGACACATACCCAATTCAAACCTGACACAACACTCACAAACACGAGTCAAATTCTCAAACTACGACACATACCCAACTCAAACCTGACACAACACTCATAAACACGGGTCAAATTCTCAAATTACGACACATACCCAACTCAAACCTGACACGACACTCACAAACATGTGTCAAACTCGACACAAAATCAAACACGAACACACTCTTGAACCTCGTGGGATTGACTCTCATCTACCTATTCAACTGCCCAAGTTCCAACCCACCAATAAACCATCTATCTGTTCTCCCATTCTCCCACCTCCATCCGGCCATCCATCTTCATCACTCTCCTCACCAAATCCCAACACTTTTTCTCTCTCCTCAATCCTCATAAGTCAGAGAGTCACAGACCCCAAATTCAACCCGAACTCTCACAAATTCACAATTAACACACACCTTCTTCAACCTCAACAACCCCTCCATCCTCAAAACCTCACAAAAAATGGCTCTGGAATTATGGGGAACACTCAAAGAAGCAATCACAACATACACAGGTCTTTCTCCAACAACTTTCTTCACTGTAGTTGTTTTAAGTTTAGCCTTTTACCATATGGTTTTTGGGTTGTTTGGATCAACCCCTTCTCCGCATCAACGCCATAGGTCTATGGAGGAAGAGATGGAGCCCTTGCCACCACCGGTTCAGCTTGGGGAGATTGAGGAAGATGAGTTGAAACTCTATGATGGCACTGATCCCAAGAAACCCTTGCTTATGGCTATTAAGGGTCAGATCTACGATGTTTCCCAGAGCAGGATGTTCTATGGTCCAGGTGGGCCCTACGCTTTATTCGCCGGCAAAGACGCCAGCCGAGCTCTAGCCAAGATGTCGTTCGAAGATAGCGATTTGACAGGGGATATTTCCGGCCTTGGTCCTTTCGAGCTCGATGCACTACAAGACTGGGAATACAAGTTTATGAGTAAATATGTTAAGGTCGGAACTATTAAGTCAAAGGATGCTCCGGTAACTGATGTATCCTCTCCTACCGAAGCAGCCGAAGCTACTGACGGCGTGTCAGAGAAGCCTGAAGCAGAGACTGTAGAGACACCGGCTACCGATGCTGAGAATAAAGACGAGTAAAACAAACAAAAAACTATGCCGTTGGCTGTATACCGAGTTTTGGAAGAAAAAAAAAAGTTTTTAAGAAGCATGGAAAAAGATATAGAAGGGGGGGCTAAGTAGGTTTGGGGTTAAAGAAGTGTGGAATGATGTGATAAATTGGATCCTTGTTACAAGAACTTGTTTACTTGAATTGCTATTGTAAATAAGCATGCTTGTCTGTGGACTCCATTGAATAAGTTTGATGGTAATACAGCTGAAATTGTTGCAATCTCTCTTTTATTTGGCTTATGTAAGATGGTTGTGAGTTGGGCTGGGCTGGGCTAAGCTTTGTGTTGAGCCCACGTGTTTTCGGTGAACAGGGCCGACTCACGCCAAATCCACTTATTTCATATGGGTTGGCTGTATCGAAATTTTCAAAAAAAATGGCCTAGGCACGGCCCAAACCACGTACCCTCGTGTTGGGTCGG ATGGCTCTGGAATTATGGGGAACACTCAAAGAAGCAATCACAACATACACAGGTCTTTCTCCAACAACTTTCTTCACTGTAGTTGTTTTAAGTTTAGCCTTTTACCATATGGTTTTTGGGTTGTTTGGATCAACCCCTTCTCCGCATCAACGCCATAGGTCTATGGAGGAAGAGATGGAGCCCTTGCCACCACCGGTTCAGCTTGGGGAGATTGAGGAAGATGAGTTGAAACTCTATGATGGCACTGATCCCAAGAAACCCTTGCTTATGGCTATTAAGGGTCAGATCTACGATGTTTCCCAGAGCAGGATGTTCTATGGTCCAGGTGGGCCCTACGCTTTATTCGCCGGCAAAGACGCCAGCCGAGCTCTAGCCAAGATGTCGTTCGAAGATAGCGATTTGACAGGGGATATTTCCGGCCTTGGTCCTTTCGAGCTCGATGCACTACAAGACTGGGAATACAAGTTTATGAGTAAATATGTTAAGGTCGGAACTATTAAGTCAAAGGATGCTCCGGTAACTGATGTATCCTCTCCTACCGAAGCAGCCGAAGCTACTGACGGCGTGTCAGAGAAGCCTGAAGCAGAGACTGTAGAGACACCGGCTACCGATGCTGAGAATAAAGACGAGTAA MALELWGTLKEAITTYTGLSPTTFFTVVVLSLAFYHMVFGLFGSTPSPHQRHRSMEEEMEPLPPPVQLGEIEEDELKLYDGTDPKKPLLMAIKGQIYDVSQSRMFYGPGGPYALFAGKDASRALAKMSFEDSDLTGDISGLGPFELDALQDWEYKFMSKYVKVGTIKSKDAPVTDVSSPTEAAEATDGVSEKPEAETVETPATDAENKDE Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo12965.1 vs. NCBI nr
Match: gi|902235440|gb|KNA23910.1| (hypothetical protein SOVF_019540 [Spinacia oleracea]) HSP 1 Score: 411.0 bits (1055), Expect = 1.300e-111 Identity = 209/210 (99.52%), Postives = 209/210 (99.52%), Query Frame = 1
BLAST of Spo12965.1 vs. NCBI nr
Match: gi|731363620|ref|XP_010693524.1| (PREDICTED: membrane steroid-binding protein 2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 320.5 bits (820), Expect = 2.200e-84 Identity = 170/227 (74.89%), Postives = 182/227 (80.18%), Query Frame = 1
BLAST of Spo12965.1 vs. NCBI nr
Match: gi|702488501|ref|XP_010035120.1| (PREDICTED: membrane steroid-binding protein 2 [Eucalyptus grandis]) HSP 1 Score: 289.3 bits (739), Expect = 5.500e-75 Identity = 153/212 (72.17%), Postives = 168/212 (79.25%), Query Frame = 1
BLAST of Spo12965.1 vs. NCBI nr
Match: gi|743857017|ref|XP_011030067.1| (PREDICTED: membrane steroid-binding protein 2-like [Populus euphratica]) HSP 1 Score: 288.1 bits (736), Expect = 1.200e-74 Identity = 157/217 (72.35%), Postives = 175/217 (80.65%), Query Frame = 1
BLAST of Spo12965.1 vs. NCBI nr
Match: gi|255539487|ref|XP_002510808.1| (PREDICTED: membrane steroid-binding protein 1 [Ricinus communis]) HSP 1 Score: 287.3 bits (734), Expect = 2.100e-74 Identity = 154/219 (70.32%), Postives = 173/219 (79.00%), Query Frame = 1
BLAST of Spo12965.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWJ8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_019540 PE=3 SV=1) HSP 1 Score: 411.0 bits (1055), Expect = 8.800e-112 Identity = 209/210 (99.52%), Postives = 209/210 (99.52%), Query Frame = 1
BLAST of Spo12965.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BDV2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g066760 PE=3 SV=1) HSP 1 Score: 320.5 bits (820), Expect = 1.600e-84 Identity = 170/227 (74.89%), Postives = 182/227 (80.18%), Query Frame = 1
BLAST of Spo12965.1 vs. UniProtKB/TrEMBL
Match: G5DXK7_SILLA (Membrane steroid-binding protein (Fragment) OS=Silene latifolia PE=2 SV=1) HSP 1 Score: 300.4 bits (768), Expect = 1.700e-78 Identity = 163/210 (77.62%), Postives = 172/210 (81.90%), Query Frame = 1
BLAST of Spo12965.1 vs. UniProtKB/TrEMBL
Match: A0A058ZX73_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00245 PE=3 SV=1) HSP 1 Score: 289.3 bits (739), Expect = 3.800e-75 Identity = 153/212 (72.17%), Postives = 168/212 (79.25%), Query Frame = 1
BLAST of Spo12965.1 vs. UniProtKB/TrEMBL
Match: B9R9D3_RICCO (Steroid binding protein, putative OS=Ricinus communis GN=RCOM_1496460 PE=3 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 1.500e-74 Identity = 154/219 (70.32%), Postives = 173/219 (79.00%), Query Frame = 1
BLAST of Spo12965.1 vs. ExPASy Swiss-Prot
Match: MSBP2_ARATH (Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1) HSP 1 Score: 261.5 bits (667), Expect = 7.700e-69 Identity = 135/191 (70.68%), Postives = 152/191 (79.58%), Query Frame = 1
BLAST of Spo12965.1 vs. ExPASy Swiss-Prot
Match: MSBP1_ARATH (Membrane steroid-binding protein 1 OS=Arabidopsis thaliana GN=MSBP1 PE=1 SV=2) HSP 1 Score: 246.9 bits (629), Expect = 2.000e-64 Identity = 138/220 (62.73%), Postives = 158/220 (71.82%), Query Frame = 1
BLAST of Spo12965.1 vs. ExPASy Swiss-Prot
Match: SBP3_ARATH (Probable steroid-binding protein 3 OS=Arabidopsis thaliana GN=MP3 PE=1 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 5.400e-22 Identity = 48/99 (48.48%), Postives = 68/99 (68.69%), Query Frame = 1
BLAST of Spo12965.1 vs. ExPASy Swiss-Prot
Match: NENF_RAT (Neudesin OS=Rattus norvegicus GN=Nenf PE=2 SV=1) HSP 1 Score: 93.2 bits (230), Expect = 3.600e-18 Identity = 55/138 (39.86%), Postives = 78/138 (56.52%), Query Frame = 1
BLAST of Spo12965.1 vs. ExPASy Swiss-Prot
Match: NENF_MOUSE (Neudesin OS=Mus musculus GN=Nenf PE=1 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 4.700e-18 Identity = 55/138 (39.86%), Postives = 79/138 (57.25%), Query Frame = 1
BLAST of Spo12965.1 vs. TAIR (Arabidopsis)
Match: AT3G48890.1 (membrane-associated progesterone binding protein 3) HSP 1 Score: 261.5 bits (667), Expect = 4.300e-70 Identity = 135/191 (70.68%), Postives = 152/191 (79.58%), Query Frame = 1
BLAST of Spo12965.1 vs. TAIR (Arabidopsis)
Match: AT5G52240.1 (membrane steroid binding protein 1) HSP 1 Score: 246.9 bits (629), Expect = 1.100e-65 Identity = 138/220 (62.73%), Postives = 158/220 (71.82%), Query Frame = 1
BLAST of Spo12965.1 vs. TAIR (Arabidopsis)
Match: AT2G24940.1 (membrane-associated progesterone binding protein 2) HSP 1 Score: 105.9 bits (263), Expect = 3.000e-23 Identity = 48/99 (48.48%), Postives = 68/99 (68.69%), Query Frame = 1
BLAST of Spo12965.1 vs. TAIR (Arabidopsis)
Match: AT4G14965.1 (membrane-associated progesterone binding protein 4) HSP 1 Score: 81.3 bits (199), Expect = 8.000e-16 Identity = 37/93 (39.78%), Postives = 54/93 (58.06%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo12965.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo12965.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo12965.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo12965.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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