Spo13061.1 (mRNA) | SpinachBase

Overview


Name	Spo13061.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	60S ribosomal protein L30
Location	SpoScf_00561 : 352006 .. 354512 (-)
Sequence length	973

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGGGAGAGCCCAACATAAAACTCTTACTAGTATGAGTCAGCTTTTGTTCACTCGTTCCTGTGTTGTTCATCTTTATTTTTGAAGCATTCTCTCCCTCACCAGGCGCCGCCGCCGCCGACGTCGAGATGGCTCCATCTAAGAAGACGGTAGCCCTAACTTTCTCTCTCGAATATTCTCATCATCGTTTCCCTTTTCATTTACTTGATTGATGATAAAATCAAAAATTAATGGAGGTTGGTTGAATTTGCAGAAGAAGACTCATGAGAGCATCAACAACAGGTTGGCTCTTGTCATGAAGAGTGGCAAGTTCACTCTTGGTTACAAAACGGTCCTCAAAACCCTTAGATCTTCAAAGGGTAAACCCTGTCCTTTTAACATTTCCCAGTTTGTACATTTTTGCAATTTTTTTTTGTAAAAGGTCCCTGTTTCCTTGTTCTATTTTTTAAGAAATGACGTATAAAACTGTATTATTGTATGATATTAACCTGATTGGGGTTATTTAGATCTGCGTGTATTTAAAATTTCGGGGTAATTGTTCATTTTCTGGATTTTAAGTAAGGGTTCAGTTTAGGGTTTTGGAGTTTGTAGCTTTGTTAATATGTTAATATTCAATTCTTGGCATCGTAGATTTGTAAAATCGCAACATTTTATTTGAAACTTGATTTGTGAAATTACTGATCTTCAGTGGTTTTCAGCTGATAGGTTTAGCATACTCGACAATTGGTTATAGTACACATTGTTTAGAAAAGAATCAATGATGTGTCTAGTGTACTACGGAGTAGTGCTGTAGCGTTCTAGTGTTCTAGTGCTGTAGCGTTCTAGTGTTCTAGTGCTGTAGCGTTCTAGTATTACAGGGCTGTATCAGATTAAGCCAGCAAAGTGATAACATCAAACTATGTCGAGAGCTTTACAGATAGTCCACCCTAGCATGCCTAGTTAGAACAAAATAGAACCTTGCTTGCCCCTCACTTTCTTGGTTTCTTTGTTTAGGATCACTCTAACGTGTATAGAACAAGACAACATTTTGCATTCATTGGATATAACTGCTGGGAAAATCTGGTTACTGGATGCATGTTTGGTCTTCTATTATAGTGGTTCGTAGGTTGATATTTATATAATTGTTATTTTTTACGAGGTTTCTGATTAGAATTATGGAGTTATACTGGTGTGAATGTTCGCAGTAATGTAGTGTTTTGGTCAATACTATGTTATAACATTGATACTTTACTTTAATTTGTTAGAATATTTATGGGGAATAGGGGAGAAATTGCAATTTTTTTGTATCTTTTGGCTATGATTTGTATTGCTAAACTGTGCAAGATAGGGTATAGAAACATTTTGTTGAGATGGTTCGGAAATGTTTTGTTGATGCTGTACTCTGGGTTGTGACGGCCTGATTGTTTGCAGTCATGTATAATTGGTGTTGTTGGATATGTGGTTTATTCTACTTTTTATTGCCCATTTCGTCAATGTTGCCATCGAATTAGTCTTAGTTTGGTCTCACATTTATTGGGTTTCCTGTTTCATGGCTTTTTGAATTTGGTGTAAGATCTTTTTTTAAAAAATTGAACTTGCTGTTTTATTCTTGACTTGTGTGAAATGTAATGGTAAGATATGCACTTGTTATTTCTTTCAGCAAAGTTGATCATCATCTCAAACAATTGCCCACCCCTAAGGAAGTCTGAGATTGAGTACTATGCTATGTTGGCTAAGGTCGGAGTTCACCATTACAACGGAAGTAAGTGTTTCTTGGTATTGAATGGTATTTTGTTATTAATAAACCTTCCTTTGATATTTAGACATGTTTTTATCTGATTCCTTGTCTTGAATTCTCTCCCCGAACCCAATGTCAGTAGGATGTTAAACTTATGATGATGTTGGTTTACAGACAATGTTGATCTTGGAACTGCTTGCGGGAAGTATTACAGGGTGTGCTGCCTCAGCATTATTGATGCAGGTGACTCAGATATCATCAAGAGCATGCCCGACCACTAAATTTGCTGCCTTGTAGAAAGAAGTTTTGAGGTTTATTCATAGGAGCTTTGTTTCTGTTTCAGTCTCTTGGACCCGTTTGTTTGTAGACATTCGACTTCTATAGATTCATGTATCTCGTTTAAACTTGGATGCCACTTTTCTCTTGTGCTCTTTTGATATGAGTCTCTTGCTGATCAAGTAATATGGGTTTACAATGGTCTGTCACTGTTGTCATGAACTCATTGGTTGGGACACTGATGGACTCCTCTAAGCTATATCCCATGTTTTTATTAACGTCTGAAACTTTCTCATATGCACAAGTCCAACATTCCGTCAATTTGGAGTAGTCGAGTAGACCTACTACATGTATGTAGATCATTTGACCTTTTTATTAACGTCTGAAACTAACTTGAGGTTTGGTGTTTGATCCTTGCTTCTACCTCTTTGGGTGTAATATTTTAACGTGGAAGTTACTAAAAAGATAATGTAATTCCTAAAAATACAGCCATAAATGGTATACGTAACTCCCG

mRNA sequence

GAAAGGGAGAGCCCAACATAAAACTCTTACTAGTATGAGTCAGCTTTTGTTCACTCGTTCCTGTGTTGTTCATCTTTATTTTTGAAGCATTCTCTCCCTCACCAGGCGCCGCCGCCGCCGACGTCGAGATGGCTCCATCTAAGAAGACGAAGAAGACTCATGAGAGCATCAACAACAGGTTGGCTCTTGTCATGAAGAGTGGCAAGTTCACTCTTGGTTACAAAACGGTCCTCAAAACCCTTAGATCTTCAAAGGCAAAGTTGATCATCATCTCAAACAATTGCCCACCCCTAAGGAAGTCTGAGATTGAGTACTATGCTATGTTGGCTAAGGTCGGAGTTCACCATTACAACGGAAACAATGTTGATCTTGGAACTGCTTGCGGGAAGTATTACAGGGTGTGCTGCCTCAGCATTATTGATGCAGGTGACTCAGATATCATCAAGAGCATGCCCGACCACTAAATTTGCTGCCTTGTAGAAAGAAGTTTTGAGGTTTATTCATAGGAGCTTTGTTTCTGTTTCAGTCTCTTGGACCCGTTTGTTTGTAGACATTCGACTTCTATAGATTCATGTATCTCGTTTAAACTTGGATGCCACTTTTCTCTTGTGCTCTTTTGATATGAGTCTCTTGCTGATCAAGTAATATGGGTTTACAATGGTCTGTCACTGTTGTCATGAACTCATTGGTTGGGACACTGATGGACTCCTCTAAGCTATATCCCATGTTTTTATTAACGTCTGAAACTTTCTCATATGCACAAGTCCAACATTCCGTCAATTTGGAGTAGTCGAGTAGACCTACTACATGTATGTAGATCATTTGACCTTTTTATTAACGTCTGAAACTAACTTGAGGTTTGGTGTTTGATCCTTGCTTCTACCTCTTTGGGTGTAATATTTTAACGTGGAAGTTACTAAAAAGATAATGTAATTCCTAAAAATACAGCCATAAATGGTATACGTAACTCCCG

Coding sequence (CDS)

ATGGCTCCATCTAAGAAGACGAAGAAGACTCATGAGAGCATCAACAACAGGTTGGCTCTTGTCATGAAGAGTGGCAAGTTCACTCTTGGTTACAAAACGGTCCTCAAAACCCTTAGATCTTCAAAGGCAAAGTTGATCATCATCTCAAACAATTGCCCACCCCTAAGGAAGTCTGAGATTGAGTACTATGCTATGTTGGCTAAGGTCGGAGTTCACCATTACAACGGAAACAATGTTGATCTTGGAACTGCTTGCGGGAAGTATTACAGGGTGTGCTGCCTCAGCATTATTGATGCAGGTGACTCAGATATCATCAAGAGCATGCCCGACCACTAA

Protein sequence

MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo13061	Spo13061	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo13061.1	Spo13061.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13061.1.utr5p.1	Spo13061.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13061.1.CDS.4	Spo13061.1.CDS.4	CDS
Spo13061.1.CDS.3	Spo13061.1.CDS.3	CDS
Spo13061.1.CDS.2	Spo13061.1.CDS.2	CDS
Spo13061.1.CDS.1	Spo13061.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13061.1.utr3p.1	Spo13061.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13061.1.exon.4	Spo13061.1.exon.4	exon
Spo13061.1.exon.3	Spo13061.1.exon.3	exon
Spo13061.1.exon.2	Spo13061.1.exon.2	exon
Spo13061.1.exon.1	Spo13061.1.exon.1	exon

Homology

[Close]

BLAST of Spo13061.1 vs. NCBI nr
Match: gi|902209349|gb|KNA16188.1| (hypothetical protein SOVF_091420, partial [Spinacia oleracea])

HSP 1 Score: 227.6 bits (579), Expect = 1.000e-56
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI
Sbjct: 14  MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 73

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH
Sbjct: 74  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH 124

[Close]

BLAST of Spo13061.1 vs. NCBI nr
Match: gi|902197326|gb|KNA13384.1| (hypothetical protein SOVF_117400 [Spinacia oleracea])

HSP 1 Score: 227.6 bits (579), Expect = 1.000e-56
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI
Sbjct: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH 111

[Close]

BLAST of Spo13061.1 vs. NCBI nr
Match: gi|731348503|ref|XP_010685518.1| (PREDICTED: 60S ribosomal protein L30 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 213.8 bits (543), Expect = 1.600e-52
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  SKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLR+SKAKLIIISNNCPPLRKSEI
Sbjct: 1   MVSSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRTSKAKLIIISNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP-DH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSII+ GDSDIIKSMP DH
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIEPGDSDIIKSMPGDH 112

[Close]

BLAST of Spo13061.1 vs. NCBI nr
Match: gi|697155155|ref|XP_009631814.1| (PREDICTED: 60S ribosomal protein L30-like [Nicotiana tomentosiformis])

HSP 1 Score: 209.9 bits (533), Expect = 2.200e-51
Identity = 101/110 (91.82%), Postives = 106/110 (96.36%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  +KKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLR+SK KLIII+NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPD 111
           EYYAMLAKVGVHHYNGNNVDLGTACGKY+RVCCLSIID GDSDIIKSMPD
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKSMPD 110

[Close]

BLAST of Spo13061.1 vs. NCBI nr
Match: gi|702279726|ref|XP_010045139.1| (PREDICTED: 60S ribosomal protein L30 [Eucalyptus grandis])

HSP 1 Score: 209.5 bits (532), Expect = 2.900e-51
Identity = 102/113 (90.27%), Postives = 107/113 (94.69%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  +KKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLR+SK KL+II+NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLVIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP--DH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIID GDSDIIKSMP  DH
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGGDH 113

[Close]

BLAST of Spo13061.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R367_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_117400 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 7.300e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI
Sbjct: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH 111

[Close]

BLAST of Spo13061.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R9J9_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_091420 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 7.300e-57
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI
Sbjct: 14  MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 73

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH
Sbjct: 74  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMPDH 124

[Close]

BLAST of Spo13061.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BU14_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g171800 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.100e-52
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  SKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLR+SKAKLIIISNNCPPLRKSEI
Sbjct: 1   MVSSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRTSKAKLIIISNNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP-DH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSII+ GDSDIIKSMP DH
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIEPGDSDIIKSMPGDH 112

[Close]

BLAST of Spo13061.1 vs. UniProtKB/TrEMBL
Match: A0A059D9M8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03786 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 2.000e-51
Identity = 102/113 (90.27%), Postives = 107/113 (94.69%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  +KKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLR+SK KL+II+NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLVIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP--DH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIID GDSDIIKSMP  DH
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPGGDH 113

[Close]

BLAST of Spo13061.1 vs. UniProtKB/TrEMBL
Match: K4DAK6_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 2.700e-51
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  +KKTKKTHESINNRLALVMKSGK+TLGYKTVLKTLR+SK KLIII+NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRNSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP 110
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIID GDSDIIKSMP
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMP 109

[Close]

BLAST of Spo13061.1 vs. ExPASy Swiss-Prot
Match: RL30_LUPLU (60S ribosomal protein L30 OS=Lupinus luteus GN=RPL30 PE=3 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 2.000e-52
Identity = 98/109 (89.91%), Postives = 105/109 (96.33%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  +KKTKKTHESINNRLALVMKSGK+TLGYKTVLK+LRSSK KLIII+NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP 110
           EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSI+D GDSDIIK++P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIVDPGDSDIIKTLP 109

[Close]

BLAST of Spo13061.1 vs. ExPASy Swiss-Prot
Match: RL30_EUPES (60S ribosomal protein L30 OS=Euphorbia esula GN=RPL30 PE=3 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 3.500e-52
Identity = 100/112 (89.29%), Postives = 108/112 (96.43%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  +KKTKKTHESIN+RLALVMKSGKFTLGYKTVL++LRS+K KLIII+NNCPPLRKSEI
Sbjct: 1   MVAAKKTKKTHESINSRLALVMKSGKFTLGYKTVLESLRSNKGKLIIIANNCPPLRKSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP-DH 112
           EYYAMLAKVGVHHYNGNNVDLGTACGKY+RVCCLSIIDAGDSDIIKS+P DH
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVCCLSIIDAGDSDIIKSIPGDH 112

[Close]

BLAST of Spo13061.1 vs. ExPASy Swiss-Prot
Match: RL302_ARATH (60S ribosomal protein L30-2 OS=Arabidopsis thaliana GN=RPL30B PE=3 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.500e-47
Identity = 90/109 (82.57%), Postives = 100/109 (91.74%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGK+TLGYK+VLK+LR SK KLI+IS NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP 110
           EYYAMLAKVGVHHYNGNNVDLGTACGKY+RV CLSI+D GDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIP 109

[Close]

BLAST of Spo13061.1 vs. ExPASy Swiss-Prot
Match: RL301_ARATH (Putative 60S ribosomal protein L30-1 OS=Arabidopsis thaliana GN=RPL30A PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.000e-47
Identity = 90/109 (82.57%), Postives = 102/109 (93.58%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  +KKTKK+HE IN+RLALVMKSGK+TLGYK+VLK+LRSSK KLI+IS+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP 110
           EYYAMLAKVGVHHYN NNVDLGTACGKY+RV CLSI+D GDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLP 109

[Close]

BLAST of Spo13061.1 vs. ExPASy Swiss-Prot
Match: RL303_ARATH (60S ribosomal protein L30-3 OS=Arabidopsis thaliana GN=RPL30C PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.200e-46
Identity = 88/109 (80.73%), Postives = 100/109 (91.74%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGK+TLGYK+VLK+LRSSK KLI+IS+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP 110
           EYYAMLAKVGVH YNGNNVDLGTACGKY+RV CLSI+D GDSDIIK++P
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLP 109

[Close]

BLAST of Spo13061.1 vs. TAIR (Arabidopsis)
Match: AT1G77940.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 189.9 bits (481), Expect = 8.500e-49
Identity = 90/109 (82.57%), Postives = 100/109 (91.74%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M   KKTKK+HE IN+RLALVMKSGK+TLGYK+VLK+LR SK KLI+IS NCPPLR+SEI
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP 110
           EYYAMLAKVGVHHYNGNNVDLGTACGKY+RV CLSI+D GDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIP 109

[Close]

BLAST of Spo13061.1 vs. TAIR (Arabidopsis)
Match: AT1G36240.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 189.5 bits (480), Expect = 1.100e-48
Identity = 90/109 (82.57%), Postives = 102/109 (93.58%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M  +KKTKK+HE IN+RLALVMKSGK+TLGYK+VLK+LRSSK KLI+IS+NCPPLR+SEI
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP 110
           EYYAMLAKVGVHHYN NNVDLGTACGKY+RV CLSI+D GDSDIIKS+P
Sbjct: 61  EYYAMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLP 109

[Close]

BLAST of Spo13061.1 vs. TAIR (Arabidopsis)
Match: AT3G18740.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein)

HSP 1 Score: 186.0 bits (471), Expect = 1.200e-47
Identity = 88/109 (80.73%), Postives = 100/109 (91.74%), Query Frame = 1


		  
Query: 1   MAPSKKTKKTHESINNRLALVMKSGKFTLGYKTVLKTLRSSKAKLIIISNNCPPLRKSEI 60
           M   KK KK+HE IN+RLALVMKSGK+TLGYK+VLK+LRSSK KLI+IS+NCPPLR+SEI
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEI 60

Query: 61  EYYAMLAKVGVHHYNGNNVDLGTACGKYYRVCCLSIIDAGDSDIIKSMP 110
           EYYAMLAKVGVH YNGNNVDLGTACGKY+RV CLSI+D GDSDIIK++P
Sbjct: 61  EYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLP 109

The following BLAST results are available for this feature:

BLAST of Spo13061.1 vs. NCBI nr
BLAST of Spo13061.1 vs. UniProtKB/TrEMBL
BLAST of Spo13061.1 vs. ExPASy Swiss-Prot
BLAST of Spo13061.1 vs. TAIR (Arabidopsis)

BLAST of Spo13061.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902209349\|gb\|KNA16188.1\|	1.0e-56	100.	hypothetical protein SOVF_0914...	[more]
gi\|902197326\|gb\|KNA13384.1\|	1.0e-56	100.	hypothetical protein SOVF_1174...	[more]
gi\|731348503\|ref\|XP_010685518.1\|	1.6e-52	94.6	PREDICTED: 60S ribosomal prote...	[more]
gi\|697155155\|ref\|XP_009631814.1\|	2.2e-51	91.8	PREDICTED: 60S ribosomal prote...	[more]
gi\|702279726\|ref\|XP_010045139.1\|	2.9e-51	90.2	PREDICTED: 60S ribosomal prote...	[more]

BLAST of Spo13061.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R367_SPIOL	7.3e-57	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9R9J9_SPIOL	7.3e-57	100.	Uncharacterized protein (Fragm...	[more]
A0A0J8BU14_BETVU	1.1e-52	94.6	Uncharacterized protein OS=Bet...	[more]
A0A059D9M8_EUCGR	2.0e-51	90.2	Uncharacterized protein OS=Euc...	[more]
K4DAK6_SOLLC	2.7e-51	92.6	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo13061.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RL30_LUPLU	2.0e-52	89.9	60S ribosomal protein L30 OS=L...	[more]
RL30_EUPES	3.5e-52	89.2	60S ribosomal protein L30 OS=E...	[more]
RL302_ARATH	1.5e-47	82.5	60S ribosomal protein L30-2 OS...	[more]
RL301_ARATH	2.0e-47	82.5	Putative 60S ribosomal protein...	[more]
RL303_ARATH	2.2e-46	80.7	60S ribosomal protein L30-3 OS...	[more]

BLAST of Spo13061.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT1G77940.1	8.5e-49	82.5	Ribosomal protein L7Ae/L30e/S1...	[more]
AT1G36240.1	1.1e-48	82.5	Ribosomal protein L7Ae/L30e/S1...	[more]
AT3G18740.1	1.2e-47	80.7	Ribosomal protein L7Ae/L30e/S1...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000231	Ribosomal protein L30e	PANTHER	PTHR11449	RIBOSOMAL PROTEIN L30	coord: 2..110 score: 1.6
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 13..105 score: 1.4
IPR022991	Ribosomal protein L30e, conserved site	PROSITE	PS00709	RIBOSOMAL_L30E_1	coord: 24..48 scor
IPR022991	Ribosomal protein L30e, conserved site	PROSITE	PS00993	RIBOSOMAL_L30E_2	coord: 80..100 scor

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome