Spo13230.1 (mRNA) | SpinachBase

Overview


Name	Spo13230.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr4 : 12082385 .. 12082894 (-)
Sequence length	510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCAACTAATGGAAGGAGAGACAAGGAAGAGGAAGATAACAAACATTTGCGGTGAAGACGAAGAAGAAGATGAAGATATAAAGATGGAGAAATTCTTTGCTCTTATAAGGAGTGCAAAGGATATCCGTGATCAGCTTCTTGATGCAGAAGGATCATCCAAAGAGAGAGCGAAGAAGGCGGTCGCTACGGCGGAGAAGAAGGCGGAGGTGGCGGTGGCTGGTAGAGCCGCTCAAAGGAATAATGAAAAGGGTTTTGCTAGTTTCGCAACCGCAACAGCAGCAGCAGTTGATGCAGACGCGGTTGTTCCTAATAAAAAAGCTGCGGCTGCGGCGGCGGCGGCGGCTGCTGCTGCGGCGGCAGATTCTGCTGCTAGGATTAGCAGATCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAGAACAGCAAAAAAGCAGCAGATCAGAAGAATGAATTTAAAGGGGGTAGGATTTTCTTGGATCTTAATCTTTCCCTTTAA

mRNA sequence

ATGAGGCAACTAATGGAAGGAGAGACAAGGAAGAGGAAGATAACAAACATTTGCGGTGAAGACGAAGAAGAAGATGAAGATATAAAGATGGAGAAATTCTTTGCTCTTATAAGGAGTGCAAAGGATATCCGTGATCAGCTTCTTGATGCAGAAGGATCATCCAAAGAGAGAGCGAAGAAGGCGGTCGCTACGGCGGAGAAGAAGGCGGAGGTGGCGGTGGCTGGTAGAGCCGCTCAAAGGAATAATGAAAAGGGTTTTGCTAGTTTCGCAACCGCAACAGCAGCAGCAGTTGATGCAGACGCGGTTGTTCCTAATAAAAAAGCTGCGGCTGCGGCGGCGGCGGCGGCTGCTGCTGCGGCGGCAGATTCTGCTGCTAGGATTAGCAGATCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAGAACAGCAAAAAAGCAGCAGATCAGAAGAATGAATTTAAAGGGGGTAGGATTTTCTTGGATCTTAATCTTTCCCTTTAA

Coding sequence (CDS)

ATGAGGCAACTAATGGAAGGAGAGACAAGGAAGAGGAAGATAACAAACATTTGCGGTGAAGACGAAGAAGAAGATGAAGATATAAAGATGGAGAAATTCTTTGCTCTTATAAGGAGTGCAAAGGATATCCGTGATCAGCTTCTTGATGCAGAAGGATCATCCAAAGAGAGAGCGAAGAAGGCGGTCGCTACGGCGGAGAAGAAGGCGGAGGTGGCGGTGGCTGGTAGAGCCGCTCAAAGGAATAATGAAAAGGGTTTTGCTAGTTTCGCAACCGCAACAGCAGCAGCAGTTGATGCAGACGCGGTTGTTCCTAATAAAAAAGCTGCGGCTGCGGCGGCGGCGGCGGCTGCTGCTGCGGCGGCAGATTCTGCTGCTAGGATTAGCAGATCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAGAACAGCAAAAAAGCAGCAGATCAGAAGAATGAATTTAAAGGGGGTAGGATTTTCTTGGATCTTAATCTTTCCCTTTAA

Protein sequence

MRQLMEGETRKRKITNICGEDEEEDEDIKMEKFFALIRSAKDIRDQLLDAEGSSKERAKKAVATAEKKAEVAVAGRAAQRNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAAADSAARISRSAAATAAAAAAAAEENSKKAADQKNEFKGGRIFLDLNLSL

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo13230	Spo13230	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo13230.1	Spo13230.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13230.1.CDS.1	Spo13230.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13230.1.exon.1	Spo13230.1.exon.1	exon

Homology

[Close]

BLAST of Spo13230.1 vs. NCBI nr
Match: gi|902222537|gb|KNA19200.1| (hypothetical protein SOVF_063840 [Spinacia oleracea])

HSP 1 Score: 260.8 bits (665), Expect = 1.700e-66
Identity = 163/169 (96.45%), Postives = 163/169 (96.45%), Query Frame = 1


		  
Query: 1   MRQLMEGETRKRKITNICGEDEEEDEDIKMEKFFALIRSAKDIRDQLLDAEGSSKERAKK 60
           MRQLMEGETRKRKITNICGEDEEEDEDIKMEKFFALIRSA DIRDQLLDAEGSSKERAKK
Sbjct: 1   MRQLMEGETRKRKITNICGEDEEEDEDIKMEKFFALIRSANDIRDQLLDAEGSSKERAKK 60

Query: 61  AVATAEKKAEVAVAGRAAQRNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAA 120
           AVATAEKKAEVAVAGRAAQRNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAA
Sbjct: 61  AVATAEKKAEVAVAGRAAQRNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAA 120

Query: 121 ADSAARISRSAAATAAAAAAAAEENSKKAADQKNEFKGGRIFLDLNLSL 170
           ADSAARISRS     AAAAAAAEENSKKAADQKNEFKGGRIFLDLNLSL
Sbjct: 121 ADSAARISRS-----AAAAAAAEENSKKAADQKNEFKGGRIFLDLNLSL 164

[Close]

BLAST of Spo13230.1 vs. NCBI nr
Match: gi|731327476|ref|XP_010674540.1| (PREDICTED: uncharacterized protein LOC104890664 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 107.1 bits (266), Expect = 3.100e-20
Identity = 87/175 (49.71%), Postives = 101/175 (57.71%), Query Frame = 1


		  
Query: 1   MRQLMEGETRKRKITNICGEDEEEDEDIKMEKFFALIRSAKDIRDQLLDAEGSSKERAKK 60
           MR +MEGET+KRKI N+  ED+EEDEDIK+EKFFALIRSAKDIRDQL DAEG SK R KK
Sbjct: 1   MRLIMEGETKKRKIINMA-EDDEEDEDIKIEKFFALIRSAKDIRDQLFDAEG-SKHRVKK 60

Query: 61  AVATAEKKAEVAVAGRAAQRNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAA 120
           AV T +KK+E+AV        N+  F   A     A D                   + A
Sbjct: 61  AVTTEKKKSEIAV----KTVKNDNSFTEVAVKQVVAAD-------------------STA 120

Query: 121 ADSAARISRSAAATAAAAAAAAEENSKKAADQKN------EFKGGRIFLDLNLSL 170
           A + A+ISRS          + EENS K A   N       +KGGRIFLDLNLSL
Sbjct: 121 AGANAKISRS----------SPEENSNKTATDYNSINNNSNYKGGRIFLDLNLSL 140

[Close]

BLAST of Spo13230.1 vs. NCBI nr
Match: gi|870862981|gb|KMT14169.1| (hypothetical protein BVRB_4g079870 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 88.2 bits (217), Expect = 1.500e-14
Identity = 75/156 (48.08%), Postives = 86/156 (55.13%), Query Frame = 1


		  
Query: 20  EDEEEDEDIKMEKFFALIRSAKDIRDQLLDAEGSSKERAKKAVATAEKKAEVAVAGRAAQ 79
           ED+EEDEDIK+EKFFALIRSAKDIRDQL DAEG SK R KKAV T +KK+E+AV      
Sbjct: 3   EDDEEDEDIKIEKFFALIRSAKDIRDQLFDAEG-SKHRVKKAVTTEKKKSEIAV----KT 62

Query: 80  RNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAAADSAARISRSAAATAAAAA 139
             N+  F   A     A D                   + AA + A+ISRS         
Sbjct: 63  VKNDNSFTEVAVKQVVAAD-------------------STAAGANAKISRS--------- 122

Query: 140 AAAEENSKKAADQKN------EFKGGRIFLDLNLSL 170
            + EENS K A   N       +KGGRIFLDLNLSL
Sbjct: 123 -SPEENSNKTATDYNSINNNSNYKGGRIFLDLNLSL 124

[Close]

BLAST of Spo13230.1 vs. NCBI nr
Match: gi|870839985|gb|KMS94749.1| (hypothetical protein BVRB_015670 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 65.5 bits (158), Expect = 1.000e-7
Identity = 66/135 (48.89%), Postives = 75/135 (55.56%), Query Frame = 1


		  
Query: 20  EDEEEDEDIKMEKFFALIRSAKDIRDQLLDAEGSSKERAKKAVATAEKKAEVAVAGRAAQ 79
           ED+EEDED+K+EKFFALIRSAKDI DQL DAEG SK R KKAV T +KK+EVAV      
Sbjct: 3   EDDEEDEDVKIEKFFALIRSAKDISDQLFDAEG-SKHRVKKAVTTEKKKSEVAV----KT 62

Query: 80  RNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAAADSAARISRSAAATAAAAA 139
             N+  F          VD   VV           AA +  ADS A+ISRS         
Sbjct: 63  VKNDNNFTE--------VDVKQVV-----------AADSTVADS-AKISRS--------- 102

Query: 140 AAAEENSKKAADQKN 155
            + EENS KAA   N
Sbjct: 123 -SPEENSNKAAADYN 102

[Close]

BLAST of Spo13230.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RI94_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_063840 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.200e-66
Identity = 163/169 (96.45%), Postives = 163/169 (96.45%), Query Frame = 1


		  
Query: 1   MRQLMEGETRKRKITNICGEDEEEDEDIKMEKFFALIRSAKDIRDQLLDAEGSSKERAKK 60
           MRQLMEGETRKRKITNICGEDEEEDEDIKMEKFFALIRSA DIRDQLLDAEGSSKERAKK
Sbjct: 1   MRQLMEGETRKRKITNICGEDEEEDEDIKMEKFFALIRSANDIRDQLLDAEGSSKERAKK 60

Query: 61  AVATAEKKAEVAVAGRAAQRNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAA 120
           AVATAEKKAEVAVAGRAAQRNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAA
Sbjct: 61  AVATAEKKAEVAVAGRAAQRNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAA 120

Query: 121 ADSAARISRSAAATAAAAAAAAEENSKKAADQKNEFKGGRIFLDLNLSL 170
           ADSAARISRS     AAAAAAAEENSKKAADQKNEFKGGRIFLDLNLSL
Sbjct: 121 ADSAARISRS-----AAAAAAAEENSKKAADQKNEFKGGRIFLDLNLSL 164

[Close]

BLAST of Spo13230.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CQ89_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g079870 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.000e-14
Identity = 75/156 (48.08%), Postives = 86/156 (55.13%), Query Frame = 1


		  
Query: 20  EDEEEDEDIKMEKFFALIRSAKDIRDQLLDAEGSSKERAKKAVATAEKKAEVAVAGRAAQ 79
           ED+EEDEDIK+EKFFALIRSAKDIRDQL DAEG SK R KKAV T +KK+E+AV      
Sbjct: 3   EDDEEDEDIKIEKFFALIRSAKDIRDQLFDAEG-SKHRVKKAVTTEKKKSEIAV----KT 62

Query: 80  RNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAAADSAARISRSAAATAAAAA 139
             N+  F   A     A D                   + AA + A+ISRS         
Sbjct: 63  VKNDNSFTEVAVKQVVAAD-------------------STAAGANAKISRS--------- 122

Query: 140 AAAEENSKKAADQKN------EFKGGRIFLDLNLSL 170
            + EENS K A   N       +KGGRIFLDLNLSL
Sbjct: 123 -SPEENSNKTATDYNSINNNSNYKGGRIFLDLNLSL 124

[Close]

BLAST of Spo13230.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B164_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_015670 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.300e-8
Identity = 66/135 (48.89%), Postives = 75/135 (55.56%), Query Frame = 1


		  
Query: 20  EDEEEDEDIKMEKFFALIRSAKDIRDQLLDAEGSSKERAKKAVATAEKKAEVAVAGRAAQ 79
           ED+EEDED+K+EKFFALIRSAKDI DQL DAEG SK R KKAV T +KK+EVAV      
Sbjct: 3   EDDEEDEDVKIEKFFALIRSAKDISDQLFDAEG-SKHRVKKAVTTEKKKSEVAV----KT 62

Query: 80  RNNEKGFASFATATAAAVDADAVVPNKKAAAAAAAAAAAAAADSAARISRSAAATAAAAA 139
             N+  F          VD   VV           AA +  ADS A+ISRS         
Sbjct: 63  VKNDNNFTE--------VDVKQVV-----------AADSTVADS-AKISRS--------- 102

Query: 140 AAAEENSKKAADQKN 155
            + EENS KAA   N
Sbjct: 123 -SPEENSNKAAADYN 102

The following BLAST results are available for this feature:

BLAST of Spo13230.1 vs. NCBI nr
BLAST of Spo13230.1 vs. UniProtKB/TrEMBL
BLAST of Spo13230.1 vs. ExPASy Swiss-Prot
BLAST of Spo13230.1 vs. TAIR (Arabidopsis)

BLAST of Spo13230.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 4


Match Name	E-value	Identity	Description
gi\|902222537\|gb\|KNA19200.1\|	1.7e-66	96.4	hypothetical protein SOVF_0638...	[more]
gi\|731327476\|ref\|XP_010674540.1\|	3.1e-20	49.7	PREDICTED: uncharacterized pro...	[more]
gi\|870862981\|gb\|KMT14169.1\|	1.5e-14	48.0	hypothetical protein BVRB_4g07...	[more]
gi\|870839985\|gb\|KMS94749.1\|	1.0e-7	48.8	hypothetical protein BVRB_0156...	[more]

BLAST of Spo13230.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3


Match Name	E-value	Identity	Description
A0A0K9RI94_SPIOL	1.2e-66	96.4	Uncharacterized protein OS=Spi...	[more]
A0A0J8CQ89_BETVU	1.0e-14	48.0	Uncharacterized protein OS=Bet...	[more]
A0A0J8B164_BETVU	7.3e-8	48.8	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo13230.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo13230.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
No results

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance