Spo13270.1 (mRNA) | SpinachBase

Overview


Name	Spo13270.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RING/FYVE/PHD zinc finger superfamily protein
Location	SpoScf_03172 : 1214 .. 2965 (-)
Sequence length	1037

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTGAATGGTGGGTCGTTCCCTAGAAAACTAGCACAGTGTAGGATTTGCCATGATGAAGATGAATCTTCGAACATGGAATCGCCATGTTCTTGTTGCGGTAGCTTGAAGGTTTGTTTCTTTGGAACATATTCAAGTTGATAATGTCATGTAGTAGTTGATCATAACTCGTATATCACTGAAGTTGTTTGTGTTGGCTTGTTTACAAGATTATTCTGATATAGGAGGATGTGTTGTATTGTTTTCCGGCTATCATTCTTATTGCCTATTGAATGGGTTATGGTGATGATAATTGAATCTTAATTTTTGAATGAATGCAGTATGCTCACCATAGATGTGTACAGATGTGGTGCAACCAAAAGGGTGACACTGTCTGTGAGATCTGCCTGCAGGTTCTCTTTAACCTTCTCTGATATTTTTTTTCCTGTTTGTGGTTTAATAGTTTGGTTAACAAAGATAACTATCCACTCTATTTACTATTTAGTATCTTTGATTTTATGAGGCTGCAGCCATTCAAGGCTGGTTATACCGTGCCACCCCCTAGATTGCCCTTTGCTGTCATTCCAGTGCGTTTGAGGTACCTCTCGCCTCTGTGTACTTCCATGCCAAGATGTCTTGTGTCTGAGTAACTTGTATATCTCTACAATGATGTGCTTGTATGCCATTAAACATTTCTTCTAACTTGTACAGGGAACCTTGGGAGTTCTCAACGAGTAATCAATATGCTCATCCATCAATAGTTGCTGCTGAAAATTTCTTCGATCATAGAGTTGATGACTTTACAGCTCCGACTGCAAGCATAATCTGTTGTCGGATCATTACAATCATAGTAATCTCTCTTCCTCATTGTTTTCTGCTGATTAACACCAATCCTATCCTTATTGGGGTTTTGGAGTATCAAACATCAACATTCTACAAATTTTATTATGTTCTCAGTCGATACAGTCATGTTTAGTAGCAATTAATATATAATATGGAATCAAACTGATAATGCTGTTGTTGTTTGCAAGCAGTTTATGGTTCTGGTTGTTCTACGCCATACTCTTCCTATTGTATATAACGGGGCTGGAGAATACTCTTTTACCTTATACACGGTGAGTCGTGAGTTACCTTCAATTCATCCCTTTTATAAATGCATAATTCACTATAATGTTGAGTATATTAAGATGCCTGAAACCGCTTGCAGTTATTGATGCTGAGGACCATTGCGATTCTTCTGCCAATGTTTGTCATGCTTAAAGCATGCAGCGTTGTTCGGCATCATCGGAGACACCGACACGCACTTTATCATGCTACATCAGATGAAGAAAATGAGCTAGCGCAGACGCAGATATCAGCTCATATTATCCGTATTCAGTAATTACCATGATCATCTAAAGTGAAGACATTCACTGTGGCAATTTAAGATTCATCAGAATTGCCAACTCAACTGAATGTTCTTTTGTCAAACAACGGAATGTATATATTCTTGACAAAAGCGCTATTGTGGAAGTCAGAGGAAACAAGGATTAAATTGGCCAACATATGACTTCATCCGAGGATTCTCCAGATGTAAATAGTAATAGTAGTACTCAGAATCTGTATATAAAACTCAGCTAACAGTAGTATTGATTGATTCAAATGGCTATAAAATATCAACCATTATGTGTATACGGTTCCGTTTCCCTGGGATAATCAGGCTGGAAGTTACCAACATACAAGCACAACATGTTGCTATGGCTAATGTACCACTCCAAACAACTTCCCTCC

mRNA sequence

ATGGATGTGAATGGTGGGTCGTTCCCTAGAAAACTAGCACAGTGTAGGATTTGCCATGATGAAGATGAATCTTCGAACATGGAATCGCCATGTTCTTGTTGCGGTAGCTTGAAGTATGCTCACCATAGATGTGTACAGATGTGGTGCAACCAAAAGGGTGACACTGTCTGTGAGATCTGCCTGCAGCCATTCAAGGCTGGTTATACCGTGCCACCCCCTAGATTGCCCTTTGCTGTCATTCCAGTGCGTTTGAGGGAACCTTGGGAGTTCTCAACGAGTAATCAATATGCTCATCCATCAATAGTTGCTGCTGAAAATTTCTTCGATCATAGAGTTGATGACTTTACAGCTCCGACTGCAAGCATAATCTGTTGTCGGATCATTACAATCATATTTATGGTTCTGGTTGTTCTACGCCATACTCTTCCTATTGTATATAACGGGGCTGGAGAATACTCTTTTACCTTATACACGTTATTGATGCTGAGGACCATTGCGATTCTTCTGCCAATGTTTGTCATGCTTAAAGCATGCAGCGTTGTTCGGCATCATCGGAGACACCGACACGCACTTTATCATGCTACATCAGATGAAGAAAATGAGCTAGCGCAGACGCAGATATCAGCTCATATTATCCGTATTCAGTAATTACCATGATCATCTAAAGTGAAGACATTCACTGTGGCAATTTAAGATTCATCAGAATTGCCAACTCAACTGAATGTTCTTTTGTCAAACAACGGAATGTATATATTCTTGACAAAAGCGCTATTGTGGAAGTCAGAGGAAACAAGGATTAAATTGGCCAACATATGACTTCATCCGAGGATTCTCCAGATGTAAATAGTAATAGTAGTACTCAGAATCTGTATATAAAACTCAGCTAACAGTAGTATTGATTGATTCAAATGGCTATAAAATATCAACCATTATGTGTATACGGTTCCGTTTCCCTGGGATAATCAGGCTGGAAGTTACCAACATACAAGCACAACATGTTGCTATGGCTAATGTACCACTCCAAACAACTTCCCTCC

Coding sequence (CDS)

ATGGATGTGAATGGTGGGTCGTTCCCTAGAAAACTAGCACAGTGTAGGATTTGCCATGATGAAGATGAATCTTCGAACATGGAATCGCCATGTTCTTGTTGCGGTAGCTTGAAGTATGCTCACCATAGATGTGTACAGATGTGGTGCAACCAAAAGGGTGACACTGTCTGTGAGATCTGCCTGCAGCCATTCAAGGCTGGTTATACCGTGCCACCCCCTAGATTGCCCTTTGCTGTCATTCCAGTGCGTTTGAGGGAACCTTGGGAGTTCTCAACGAGTAATCAATATGCTCATCCATCAATAGTTGCTGCTGAAAATTTCTTCGATCATAGAGTTGATGACTTTACAGCTCCGACTGCAAGCATAATCTGTTGTCGGATCATTACAATCATATTTATGGTTCTGGTTGTTCTACGCCATACTCTTCCTATTGTATATAACGGGGCTGGAGAATACTCTTTTACCTTATACACGTTATTGATGCTGAGGACCATTGCGATTCTTCTGCCAATGTTTGTCATGCTTAAAGCATGCAGCGTTGTTCGGCATCATCGGAGACACCGACACGCACTTTATCATGCTACATCAGATGAAGAAAATGAGCTAGCGCAGACGCAGATATCAGCTCATATTATCCGTATTCAGTAA

Protein sequence

MDVNGGSFPRKLAQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEICLQPFKAGYTVPPPRLPFAVIPVRLREPWEFSTSNQYAHPSIVAAENFFDHRVDDFTAPTASIICCRIITIIFMVLVVLRHTLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVMLKACSVVRHHRRHRHALYHATSDEENELAQTQISAHIIRIQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo13270	Spo13270	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo13270.1	Spo13270.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13270.1.CDS.6	Spo13270.1.CDS.6	CDS
Spo13270.1.CDS.5	Spo13270.1.CDS.5	CDS
Spo13270.1.CDS.4	Spo13270.1.CDS.4	CDS
Spo13270.1.CDS.3	Spo13270.1.CDS.3	CDS
Spo13270.1.CDS.2	Spo13270.1.CDS.2	CDS
Spo13270.1.CDS.1	Spo13270.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13270.1.utr3p.1	Spo13270.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13270.1.exon.6	Spo13270.1.exon.6	exon
Spo13270.1.exon.5	Spo13270.1.exon.5	exon
Spo13270.1.exon.4	Spo13270.1.exon.4	exon
Spo13270.1.exon.3	Spo13270.1.exon.3	exon
Spo13270.1.exon.2	Spo13270.1.exon.2	exon
Spo13270.1.exon.1	Spo13270.1.exon.1	exon

Homology

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BLAST of Spo13270.1 vs. NCBI nr
Match: gi|902191112|gb|KNA11771.1| (hypothetical protein SOVF_132070 [Spinacia oleracea])

HSP 1 Score: 445.7 bits (1145), Expect = 4.700e-122
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1


		  
Query: 1   MDVNGGSFPRKLAQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEIC 60
           MDVNGGSFPRKLAQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEIC
Sbjct: 1   MDVNGGSFPRKLAQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEIC 60

Query: 61  LQPFKAGYTVPPPRLPFAVIPVRLREPWEFSTSNQYAHPSIVAAENFFDHRVDDFTAPTA 120
           LQPFKAGYTVPPPRLPFAVIPVRLREPWEFSTSNQYAHPSIVAAENFFDHRVDDFTAPTA
Sbjct: 61  LQPFKAGYTVPPPRLPFAVIPVRLREPWEFSTSNQYAHPSIVAAENFFDHRVDDFTAPTA 120

Query: 121 SIICCRIITIIFMVLVVLRHTLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVMLKACSV 180
           SIICCRIITIIFMVLVVLRHTLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVMLKACSV
Sbjct: 121 SIICCRIITIIFMVLVVLRHTLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVMLKACSV 180

Query: 181 VRHHRRHRHALYHATSDEENELAQTQISAHIIRIQ 216
           VRHHRRHRHALYHATSDEENELAQTQISAHIIRIQ
Sbjct: 181 VRHHRRHRHALYHATSDEENELAQTQISAHIIRIQ 215

[Close]

BLAST of Spo13270.1 vs. NCBI nr
Match: gi|731315954|ref|XP_010693624.1| (PREDICTED: E3 ubiquitin-protein ligase MARCH8 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 379.0 bits (972), Expect = 5.400e-102
Identity = 179/218 (82.11%), Postives = 196/218 (89.91%), Query Frame = 1


		  
Query: 1   MDVNGGSFPRKLAQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEIC 60
           MDVNGGSFPRKLAQCRICHDEDE S ME+PC+CCGSLKYAH RCVQMWCNQKG+TVCEIC
Sbjct: 10  MDVNGGSFPRKLAQCRICHDEDEPSKMEAPCACCGSLKYAHRRCVQMWCNQKGNTVCEIC 69

Query: 61  LQPFKAGYTVPPPRLPFAVIPVRLREPWEFSTSNQYAHPSIVAAENFFDHRVDDFTAPTA 120
            Q F  GYTVPPPRLPFAVIPV LREPWE++ SNQY HPSIVAA+ FFDHR+DD+TAPTA
Sbjct: 70  QQQFMPGYTVPPPRLPFAVIPVPLREPWEYARSNQYNHPSIVAAQTFFDHRLDDYTAPTA 129

Query: 121 SIICCRIITIIFMVLVVLRHTLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVMLKACSV 180
           SIICCRIITIIF+VLVV+RHTLP+V NGAG+YSFTLY LLMLRTI +LLPMFVMLKACS+
Sbjct: 130 SIICCRIITIIFIVLVVVRHTLPVVLNGAGDYSFTLYMLLMLRTIGVLLPMFVMLKACSI 189

Query: 181 VRHHRRHRH---ALYHATSDEENELAQTQISAHIIRIQ 216
           +RHHRRHR     LYH TSDEENEL Q +I+AHIIRIQ
Sbjct: 190 IRHHRRHRQIPAVLYHGTSDEENELVQPEIAAHIIRIQ 227

[Close]

BLAST of Spo13270.1 vs. NCBI nr
Match: gi|747098290|ref|XP_011097148.1| (PREDICTED: uncharacterized protein LOC105176135 isoform X1 [Sesamum indicum])

HSP 1 Score: 238.4 bits (607), Expect = 1.100e-59
Identity = 117/222 (52.70%), Postives = 156/222 (70.27%), Query Frame = 1


		  
Query: 1   MDVNGGSFPRKLAQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEIC 60
           +D+N GS P KLA+CRICHDEDE SNME PCSC GSLKYAHH+CVQ WCN+KGDT+CEIC
Sbjct: 33  LDLNLGSSPGKLAECRICHDEDEDSNMEIPCSCRGSLKYAHHKCVQRWCNEKGDTICEIC 92

Query: 61  LQPFKAGYTVPPPRLPFAVIPVRLREPWEFSTSNQYAHPSIVAA-----ENFFDHRVDDF 120
            Q FK GYT PPP   +  +P+  R  W  S S+   H S +A      ENF D   D++
Sbjct: 93  HQQFKPGYTAPPPLFHYGGVPMNFRGDWTISRSDM--HDSELAEMVSRDENFLDPYFDEY 152

Query: 121 TAPTA-SIICCRIITIIFMVLVVLRHTLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVM 180
             PT+ S+ICCR++ +I +VL+ LRHTLP +  GAGEYS +L+TLLMLR + ILLP+++M
Sbjct: 153 PIPTSRSLICCRVVAVILIVLLALRHTLPFIIYGAGEYSISLFTLLMLRMVGILLPIYIM 212

Query: 181 LKACSVVRHHRRHRHALYH--ATSDEENELAQTQISAHIIRI 215
           +KA + ++  R H+ +      +S++ENELAQ Q  +H+I +
Sbjct: 213 VKALTAIQRRRNHQESPIFPLPSSEKENELAQHQQHSHLIHV 252

[Close]

BLAST of Spo13270.1 vs. NCBI nr
Match: gi|1009128326|ref|XP_015881170.1| (PREDICTED: uncharacterized protein LOC107417121 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 236.9 bits (603), Expect = 3.300e-59
Identity = 121/208 (58.17%), Postives = 155/208 (74.52%), Query Frame = 1


		  
Query: 1   MDVNGGSFPRKLAQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEIC 60
           +DVN  S P KL +CRICHDEDE+SNME+PCSCCGSLKYAH +CVQ WCN+KGDT+CEIC
Sbjct: 46  IDVNMRS-PCKLVECRICHDEDEASNMETPCSCCGSLKYAHRKCVQRWCNEKGDTICEIC 105

Query: 61  LQPFKAGYTVPPPRLPFAVIPVRLREPWEFSTSNQYAHPSIV----AAENFFDHRVDDFT 120
            Q F+ GYT PPP   +  IP+  R  WE S  + + +P  +    A  ++ D   D++ 
Sbjct: 106 RQQFRPGYTAPPPLFHYGGIPMNFRGNWEVSRRDLH-NPGFIAMVSAERDYMDTDFDEYA 165

Query: 121 APTA-SIICCRIITIIFMVLVVLRHTLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVML 180
           AP++ S+ICCRI+ IIFMVL+VLRHTLPI+ +GAGEYS TL+TLLMLRTI ILLP+++M+
Sbjct: 166 APSSRSLICCRIVAIIFMVLLVLRHTLPIIISGAGEYSMTLFTLLMLRTIGILLPVYIMV 225

Query: 181 KACSVV--RHHRRHRHALYHATSDEENE 202
           KA + +  R HR+  H L  ATSDEEN+
Sbjct: 226 KAFTAIQRRRHRQDSH-LPLATSDEEND 250

[Close]

BLAST of Spo13270.1 vs. NCBI nr
Match: gi|590652324|ref|XP_007033119.1| (RING/FYVE/PHD zinc finger superfamily protein [Theobroma cacao])

HSP 1 Score: 236.5 bits (602), Expect = 4.300e-59
Identity = 116/211 (54.98%), Postives = 150/211 (71.09%), Query Frame = 1


		  
Query: 1   MDVNGGSFPRKLAQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEIC 60
           MD N GS P KL +CRICHDEDE  NME PCSC GSLKYAH +CVQ WCN+KGDT+CEIC
Sbjct: 48  MDENVGSSPSKLVECRICHDEDEDLNMEIPCSCRGSLKYAHRKCVQRWCNEKGDTICEIC 107

Query: 61  LQPFKAGYTVPPPRLPFAVIPVRLREPWEFSTSNQYAH---PSIVAAENFFDHRVDDFTA 120
            Q F+ GYT PPP   +  +P+  R  WE S  +  A      +    +F +   DD++A
Sbjct: 108 HQQFRPGYTAPPPLFHYGGVPMNFRGNWEISRRDLPAPRFITMVTTDRDFLESDFDDYSA 167

Query: 121 PTA-SIICCRIITIIFMVLVVLRHTLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVMLK 180
           P++ S+ICCR+I IIFMVL+VLRHTLPI+ +GAG+YS TL+TLLMLRT+ ILLP+++M+K
Sbjct: 168 PSSRSLICCRVIAIIFMVLLVLRHTLPIIISGAGDYSLTLFTLLMLRTVGILLPIYIMVK 227

Query: 181 ACSVVRHHRRHRHALYH-ATSDEENELAQTQ 207
           A + ++  R H+   +  A SDEE+EL Q Q
Sbjct: 228 AFTAIQRRRHHQDPRFSLAASDEESELPQLQ 258

[Close]

BLAST of Spo13270.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QZ17_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_132070 PE=4 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 3.300e-122
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1


		  
Query: 1   MDVNGGSFPRKLAQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEIC 60
           MDVNGGSFPRKLAQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEIC
Sbjct: 1   MDVNGGSFPRKLAQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEIC 60

Query: 61  LQPFKAGYTVPPPRLPFAVIPVRLREPWEFSTSNQYAHPSIVAAENFFDHRVDDFTAPTA 120
           LQPFKAGYTVPPPRLPFAVIPVRLREPWEFSTSNQYAHPSIVAAENFFDHRVDDFTAPTA
Sbjct: 61  LQPFKAGYTVPPPRLPFAVIPVRLREPWEFSTSNQYAHPSIVAAENFFDHRVDDFTAPTA 120

Query: 121 SIICCRIITIIFMVLVVLRHTLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVMLKACSV 180
           SIICCRIITIIFMVLVVLRHTLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVMLKACSV
Sbjct: 121 SIICCRIITIIFMVLVVLRHTLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVMLKACSV 180

Query: 181 VRHHRRHRHALYHATSDEENELAQTQISAHIIRIQ 216
           VRHHRRHRHALYHATSDEENELAQTQISAHIIRIQ
Sbjct: 181 VRHHRRHRHALYHATSDEENELAQTQISAHIIRIQ 215

[Close]

BLAST of Spo13270.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CY04_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g027450 PE=4 SV=1)

HSP 1 Score: 379.0 bits (972), Expect = 3.800e-102
Identity = 179/218 (82.11%), Postives = 196/218 (89.91%), Query Frame = 1


		  
Query: 1   MDVNGGSFPRKLAQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEIC 60
           MDVNGGSFPRKLAQCRICHDEDE S ME+PC+CCGSLKYAH RCVQMWCNQKG+TVCEIC
Sbjct: 10  MDVNGGSFPRKLAQCRICHDEDEPSKMEAPCACCGSLKYAHRRCVQMWCNQKGNTVCEIC 69

Query: 61  LQPFKAGYTVPPPRLPFAVIPVRLREPWEFSTSNQYAHPSIVAAENFFDHRVDDFTAPTA 120
            Q F  GYTVPPPRLPFAVIPV LREPWE++ SNQY HPSIVAA+ FFDHR+DD+TAPTA
Sbjct: 70  QQQFMPGYTVPPPRLPFAVIPVPLREPWEYARSNQYNHPSIVAAQTFFDHRLDDYTAPTA 129

Query: 121 SIICCRIITIIFMVLVVLRHTLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVMLKACSV 180
           SIICCRIITIIF+VLVV+RHTLP+V NGAG+YSFTLY LLMLRTI +LLPMFVMLKACS+
Sbjct: 130 SIICCRIITIIFIVLVVVRHTLPVVLNGAGDYSFTLYMLLMLRTIGVLLPMFVMLKACSI 189

Query: 181 VRHHRRHRH---ALYHATSDEENELAQTQISAHIIRIQ 216
           +RHHRRHR     LYH TSDEENEL Q +I+AHIIRIQ
Sbjct: 190 IRHHRRHRQIPAVLYHGTSDEENELVQPEIAAHIIRIQ 227

[Close]

BLAST of Spo13270.1 vs. UniProtKB/TrEMBL
Match: A0A061EGA0_THECC (RING/FYVE/PHD zinc finger superfamily protein OS=Theobroma cacao GN=TCM_019300 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 3.000e-59
Identity = 116/211 (54.98%), Postives = 150/211 (71.09%), Query Frame = 1


		  
Query: 1   MDVNGGSFPRKLAQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEIC 60
           MD N GS P KL +CRICHDEDE  NME PCSC GSLKYAH +CVQ WCN+KGDT+CEIC
Sbjct: 48  MDENVGSSPSKLVECRICHDEDEDLNMEIPCSCRGSLKYAHRKCVQRWCNEKGDTICEIC 107

Query: 61  LQPFKAGYTVPPPRLPFAVIPVRLREPWEFSTSNQYAH---PSIVAAENFFDHRVDDFTA 120
            Q F+ GYT PPP   +  +P+  R  WE S  +  A      +    +F +   DD++A
Sbjct: 108 HQQFRPGYTAPPPLFHYGGVPMNFRGNWEISRRDLPAPRFITMVTTDRDFLESDFDDYSA 167

Query: 121 PTA-SIICCRIITIIFMVLVVLRHTLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVMLK 180
           P++ S+ICCR+I IIFMVL+VLRHTLPI+ +GAG+YS TL+TLLMLRT+ ILLP+++M+K
Sbjct: 168 PSSRSLICCRVIAIIFMVLLVLRHTLPIIISGAGDYSLTLFTLLMLRTVGILLPIYIMVK 227

Query: 181 ACSVVRHHRRHRHALYH-ATSDEENELAQTQ 207
           A + ++  R H+   +  A SDEE+EL Q Q
Sbjct: 228 AFTAIQRRRHHQDPRFSLAASDEESELPQLQ 258

[Close]

BLAST of Spo13270.1 vs. UniProtKB/TrEMBL
Match: D7TSV4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0006g01980 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 5.200e-59
Identity = 122/220 (55.45%), Postives = 152/220 (69.09%), Query Frame = 1


		  
Query: 1   MDVNGGSFPRKLAQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEIC 60
           MDV+ G   R L QCRICHDEDE SNME PCSC GSLKYAH  CVQ WCN+KG+T CEIC
Sbjct: 48  MDVDIGPSQRILVQCRICHDEDEDSNMEVPCSCAGSLKYAHRGCVQRWCNEKGNTTCEIC 107

Query: 61  LQPFKAGYTVPPPRLPFAVIPVRLREPWEFSTSNQYAHPSIVAA----ENFFDHRVDDFT 120
            Q F+  YT PPP   +  IP+  R  WE S  +   HP  +A      NF D  +D++ 
Sbjct: 108 HQQFRPNYTAPPPLFHYGGIPMNFRGNWEVSRRDA-NHPRFIAMVASDRNFLDTDIDEYP 167

Query: 121 APTA-SIICCRIITIIFMVLVVLRHTLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVML 180
           AP + S+ICCRI+ IIFM+L+VLRHTLPI+ +GAGEYSFTL+TLLMLR I ILLP+++M+
Sbjct: 168 APNSRSVICCRIVAIIFMILLVLRHTLPIIISGAGEYSFTLFTLLMLRAIGILLPVYIMV 227

Query: 181 KACSVVRHHRRHRHALYHATSDEENELAQTQISAHIIRIQ 216
           KAC+  +  RRH+    +  SDEENE+   Q    II+I+
Sbjct: 228 KACTAFQ-RRRHQQDARNLPSDEENEM---QPQPRIIQIR 262

[Close]

BLAST of Spo13270.1 vs. UniProtKB/TrEMBL
Match: D7T8W0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g04590 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.800e-56
Identity = 114/220 (51.82%), Postives = 149/220 (67.73%), Query Frame = 1


		  
Query: 1   MDVNGGSFPRKLAQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEIC 60
           MD   GS PRKL +CRIC DEDE SNME+PCSCCGSLKYAH  CVQ WCN+KG+T+CEIC
Sbjct: 58  MDFKHGSSPRKLVECRICQDEDEDSNMETPCSCCGSLKYAHRSCVQRWCNEKGNTMCEIC 117

Query: 61  LQPFKAGYTVPPPRLPFAVIPVRLREPWEFSTSNQYAHPSIVAA----ENFFDHRVDDFT 120
            Q FK GYT PPP   F  IP+ LR  WE S   +  +P  +A      NF D   ++FT
Sbjct: 118 QQQFKPGYTAPPPLFQFRGIPINLRGNWEIS-RGELNNPRFIAMVSTDRNFLDPDYNEFT 177

Query: 121 APTA-SIICCRIITIIFMVLVVLRHTLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVML 180
             T+ S++CCR + IIFMVL++LRHTLP++ NGA EY+F L+ L++LRT  I+LP+++ML
Sbjct: 178 TSTSRSMMCCRSVAIIFMVLLILRHTLPVMINGAEEYTFPLFMLVLLRTAGIILPIYIML 237

Query: 181 KACSVV-RHHRRHRHALYHATSDEENELAQTQISAHIIRI 215
           +A + + R  R+      +A++DEE E    Q   HII +
Sbjct: 238 RAVTAIQRRPRQQDPPTPYASTDEETEQPALQPQTHIIHV 276

[Close]

BLAST of Spo13270.1 vs. ExPASy Swiss-Prot
Match: MARH2_RAT (E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.600e-6
Identity = 19/50 (38.00%), Postives = 27/50 (54.00%), Query Frame = 1


		  
Query: 15  CRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEICLQPF 65
           CRICH+     N+ SPC C G+L   H  C++ W +    + CE+C   F
Sbjct: 64  CRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113

[Close]

BLAST of Spo13270.1 vs. ExPASy Swiss-Prot
Match: MARH2_MOUSE (E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.600e-6
Identity = 19/50 (38.00%), Postives = 27/50 (54.00%), Query Frame = 1


		  
Query: 15  CRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEICLQPF 65
           CRICH+     N+ SPC C G+L   H  C++ W +    + CE+C   F
Sbjct: 64  CRICHEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113

[Close]

BLAST of Spo13270.1 vs. ExPASy Swiss-Prot
Match: MARHB_HUMAN (E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2 SV=3)

HSP 1 Score: 52.0 bits (123), Expect = 9.500e-6
Identity = 20/78 (25.64%), Postives = 39/78 (50.00%), Query Frame = 1


		  
Query: 15  CRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEICLQPFKAGYTVPPPR 74
           C+IC    E   + +PC C GS++Y H  C+  W +++G   CE+C   +          
Sbjct: 170 CKICFQGAEQGELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYH--------- 229

Query: 75  LPFAVIPVRLREPWEFST 93
               VI +++++P ++ +
Sbjct: 230 ----VIAIKMKQPCQWQS 234

[Close]

BLAST of Spo13270.1 vs. TAIR (Arabidopsis)
Match: AT2G01275.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 182.2 bits (461), Expect = 3.400e-46
Identity = 96/199 (48.24%), Postives = 129/199 (64.82%), Query Frame = 1


		  
Query: 12  LAQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEICLQPFKAGYTVP 71
           +A+CRICHDED  SNME+PCSC GS+KYAH RCVQ WCN+KGDT CEIC Q FK  YT P
Sbjct: 56  MAECRICHDEDLDSNMETPCSCSGSVKYAHRRCVQRWCNEKGDTTCEICHQEFKPDYTAP 115

Query: 72  PPRLPFAVIPVRLREPWEFSTSNQYAHPSIVAAENFFDHRVDDFTAPTASIICCRIITII 131
           PP L    +P+  R  W  S   ++   ++V A++ F  +    ++ T S ICCR + +I
Sbjct: 116 PPLLELGHVPLHFRGNWGIS-QREHRFITVVPADSTFIDQPYPLSS-TTSFICCRSLVLI 175

Query: 132 FMVLVVLRHTLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVMLKACSVVRHHRRHRH-A 191
           FM L++LRHTLP+V  G+  + F L+TLL LR + I+LP++V+ KA +  R H R    +
Sbjct: 176 FMALLILRHTLPLVLTGSNLHVFPLFTLLFLRILGIMLPIYVVTKAVATCRRHSRTLDTS 235

Query: 192 LYHATSDEENE---LAQTQ 207
               +SDEE +   L QTQ
Sbjct: 236 PSDDSSDEETDSWRLPQTQ 252

[Close]

BLAST of Spo13270.1 vs. TAIR (Arabidopsis)
Match: AT5G38070.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 166.0 bits (419), Expect = 2.500e-41
Identity = 84/190 (44.21%), Postives = 119/190 (62.63%), Query Frame = 1


		  
Query: 11  KLAQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEICLQPFKAGYTV 70
           K  QCRICHDEDE +NM++PCSC G+LK+AHH CVQ WCN+KGDTVCEIC Q +K GYT 
Sbjct: 50  KFVQCRICHDEDEDTNMDTPCSCSGTLKFAHHNCVQRWCNEKGDTVCEICRQQYKPGYTA 109

Query: 71  PPPRLPFAVIPVRLREPWEFSTSNQYAHPSIVAAENFFDHRVDDFTAPTASIICCRIITI 130
           P     +  I +     W     +      +   +   DH +  F +PT S+ICCR+I +
Sbjct: 110 PRQLFHYTGISMNFGSDWGIEGLDLRNPYFLTWGDADDDHDLYSFHSPT-SLICCRLIAL 169

Query: 131 IFMVLVVLRHTLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVMLKACSVVRHHRRHRHA 190
           +F++L+ LRH+LP++  G  ++S TL  L ++RT+ ILL  +V  K+  V++  R+ R  
Sbjct: 170 LFVLLLFLRHSLPVLLGGVDDFSITLLMLPLVRTLGILLIAYVFFKSFIVIQRCRQERDT 229

Query: 191 -LYHATSDEE 200
            L   +SDEE
Sbjct: 230 RLSGFSSDEE 238

[Close]

BLAST of Spo13270.1 vs. TAIR (Arabidopsis)
Match: AT5G62460.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 132.5 bits (332), Expect = 3.100e-31
Identity = 74/192 (38.54%), Postives = 105/192 (54.69%), Query Frame = 1


		  
Query: 14  QCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEICLQPFKAGYTVPPP 73
           +CRIC +ED   N+ESPCSC GSLKYAH +CVQ WCN+KGDT CEIC + ++ GYT PPP
Sbjct: 77  ECRICQEEDSVKNLESPCSCSGSLKYAHRKCVQRWCNEKGDTTCEICHKSYQPGYTAPPP 136

Query: 74  RLPFAVIPVRLREPWEFSTSNQYAHPSIV----AAENFFDHRVDDFTAPTAS-IICCRII 133
             P     + + E W          P I+    A  +FFD   D++    +S    CR  
Sbjct: 137 P-PADDTIIDIGEDWGNGVHLDLNDPRILAMAAAERHFFDADYDEYADSNSSGAAFCRSA 196

Query: 134 TIIFMVLVVLRHTLPIVYNGAGEYS---FTLYTLLMLRTIAILLPMFVMLKACSVVRHHR 193
            +I M L++LRH L +  N + +        + L MLR    LLP ++M  A S+++  R
Sbjct: 197 ALILMALLLLRHALNLTNNNSDDEEDDPSAFFFLFMLRAAGFLLPCYIMAWAISILQRRR 256

Query: 194 RHRHALYHATSD 198
           + + A   A ++
Sbjct: 257 QRQEAAALAAAE 267

[Close]

BLAST of Spo13270.1 vs. TAIR (Arabidopsis)
Match: AT3G47550.3 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 131.3 bits (329), Expect = 6.900e-31
Identity = 71/190 (37.37%), Postives = 107/190 (56.32%), Query Frame = 1


		  
Query: 14  QCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEICLQPFKAGYTVPPP 73
           +CRIC +ED + N+E+PC+C GSLKYAH +CVQ WCN+KGD  CEIC QP++ GYT PPP
Sbjct: 68  ECRICQEEDSTKNLEAPCACNGSLKYAHRKCVQRWCNEKGDITCEICHQPYQHGYTAPPP 127

Query: 74  RLPFAVIPVRLREPWEFSTSNQYAHPSIV----AAENFFDHRVDDFTAPTAS-IICCRII 133
             P   I + + + WE         P I+    A  +F +   D+++   +S    CR  
Sbjct: 128 PPPDETI-IHIGDDWENGVPLDLTDPRILAMAAAERHFLEADYDEYSENNSSGAAFCRSA 187

Query: 134 TIIFMVLVVLRHTLPIVYNGAGEYSFT-LYTLLMLRTIAILLPMFVMLKACSVVRHHRRH 193
            +I M L++LR  L +  N   E   T  ++L +LR    LLP ++M  A  +++  R+ 
Sbjct: 188 ALILMALLLLRDALNLTTNPDDEDDPTAFFSLFLLRAAGFLLPCYIMAWAIGILQRRRQR 247

Query: 194 RHALYHATSD 198
           + A   A ++
Sbjct: 248 QEAAALAAAE 256

[Close]

BLAST of Spo13270.1 vs. TAIR (Arabidopsis)
Match: AT1G14260.1 (RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 131.0 bits (328), Expect = 9.100e-31
Identity = 73/189 (38.62%), Postives = 107/189 (56.61%), Query Frame = 1


		  
Query: 13  AQCRICHDEDESSNMESPCSCCGSLKYAHHRCVQMWCNQKGDTVCEICLQPFKAGYTVPP 72
           A+CRIC DE +  N+ESPC+C GSLKYAH +CVQ WCN+KG+T+CEIC QP++AGYT PP
Sbjct: 55  AECRICQDECDIKNLESPCACNGSLKYAHRKCVQRWCNEKGNTICEICHQPYQAGYTSPP 114

Query: 73  PRLPFAVIPVRLREPWEFSTSNQYAHPSIVAAE---NFFDHRVDDFTA-PTASIICCRII 132
           P        + +   W  S  +      +  AE      +   DD+TA  T+     R  
Sbjct: 115 PPPQSEETTIDIGGGWRISGLDLDDPRLLAIAEAERQILESEYDDYTASDTSGAAFFRSA 174

Query: 133 TIIFMVLVVLRH--TLPIVYNGAGEYSFTLYTLLMLRTIAILLPMFVMLKACSVVRHHRR 192
            +I M L++LRH  T+P   +   +   ++ +L +LR  + LLP ++M  A S++   R+
Sbjct: 175 ALILMTLLLLRHALTIPDYSDSEDDDPSSILSLFLLRAASFLLPCYIMASAISILHRRRQ 234

Query: 193 HRHALYHAT 196
            + A   AT
Sbjct: 235 RQEAADLAT 243

The following BLAST results are available for this feature:

BLAST of Spo13270.1 vs. NCBI nr
BLAST of Spo13270.1 vs. UniProtKB/TrEMBL
BLAST of Spo13270.1 vs. ExPASy Swiss-Prot
BLAST of Spo13270.1 vs. TAIR (Arabidopsis)

BLAST of Spo13270.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902191112\|gb\|KNA11771.1\|	4.7e-122	100.	hypothetical protein SOVF_1320...	[more]
gi\|731315954\|ref\|XP_010693624.1\|	5.4e-102	82.1	PREDICTED: E3 ubiquitin-protei...	[more]
gi\|747098290\|ref\|XP_011097148.1\|	1.1e-59	52.7	PREDICTED: uncharacterized pro...	[more]
gi\|1009128326\|ref\|XP_015881170.1\|	3.3e-59	58.1	PREDICTED: uncharacterized pro...	[more]
gi\|590652324\|ref\|XP_007033119.1\|	4.3e-59	54.9	RING/FYVE/PHD zinc finger supe...	[more]

BLAST of Spo13270.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QZ17_SPIOL	3.3e-122	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CY04_BETVU	3.8e-102	82.1	Uncharacterized protein OS=Bet...	[more]
A0A061EGA0_THECC	3.0e-59	54.9	RING/FYVE/PHD zinc finger supe...	[more]
D7TSV4_VITVI	5.2e-59	55.4	Putative uncharacterized prote...	[more]
D7T8W0_VITVI	1.8e-56	51.8	Putative uncharacterized prote...	[more]

BLAST of Spo13270.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3


Match Name	E-value	Identity	Description
MARH2_RAT	5.6e-6	38.0	E3 ubiquitin-protein ligase MA...	[more]
MARH2_MOUSE	5.6e-6	38.0	E3 ubiquitin-protein ligase MA...	[more]
MARHB_HUMAN	9.5e-6	25.6	E3 ubiquitin-protein ligase MA...	[more]

BLAST of Spo13270.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT2G01275.1	3.4e-46	48.2	RING/FYVE/PHD zinc finger supe...	[more]
AT5G38070.1	2.5e-41	44.2	RING/FYVE/PHD zinc finger supe...	[more]
AT5G62460.1	3.1e-31	38.5	RING/FYVE/PHD zinc finger supe...	[more]
AT3G47550.3	6.9e-31	37.3	RING/FYVE/PHD zinc finger supe...	[more]
AT1G14260.1	9.1e-31	38.6	RING/FYVE/PHD zinc finger supe...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 15..60 score: 1.6
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 14..61 score: 3.6
IPR011016	Zinc finger, RING-CH-type	PROFILE	PS51292	ZF_RING_CH	coord: 7..67 score: 20
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 12..65 score: 8.0
IPR022143	Protein of unknown function DUF3675	PFAM	PF12428	DUF3675	coord: 67..178 score: 3.0
None	No IPR available	PANTHER	PTHR23012:SF89	SUBFAMILY NOT NAMED	coord: 1..214 score: 6.3
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 13..64 score: 2.37

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding