Spo13281.1 (mRNA)

Overview
NameSpo13281.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionConcanavalin A-like lectin protein kinase family protein
Locationchr2 : 14962247 .. 14962957 (-)
Sequence length297
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTCCGGGATTAATACCGATCAAGCCGTTCGGGTTGTCGACATAGCATTGCTTTGTACCTTGCCCGAGAACAATGGAAGGCCAAAAACGGATGAAATAGTAACGTTCTTGACCACGGACAGCCTCTTACCGCAACTGCCTCCAAATCGGCCTATTGTGTTGTTTCCGTACAATAGCGGCCCTCATATATGCGGAGGTTATGCCTGTGCTCCCTTCGGCTAAAGATCGAGGACACCAGCATACGAAAGAATTGTGTAAACATAAATTAGAGGAACCATTTTTTTGCATTTAGAAAAACAGTACTATTTGGTTGTAAATACTTGCTGTAAGTATAAAATGCTTGGACAAATCACAAAACTTCTCTTAAAACGAGAAACTATAGAGTATTGACCAGCTGAATAGTATACACACATGAAACTTAAAAGCACATCAGAAATGTTCACACTACTGAATTACTGGTTTGCAGCAGCAAATAAACATTTCAATTCCCAAGTACTTTAAACATTTCAATCAAGAGGAACGGAGAGCACGCAATTAAAACTGATCTGAAGATTCATTCAACTCTACATACGCGTTCCAAAGAAATGTATATCAATTTAAATATAAAGAGTGCGCATTGCTGAAAGAAGCTCTAGTACAGCTTTGATTCTTATAGAAAATCCATATAATCCAAAATTCAAGAAACAAGAGACAAAAAACTTAAGCTAA

mRNA sequence

ATGAGCTCCGGGATTAATACCGATCAAGCCGTTCGGGTTGTCGACATAGCATTGCTTTGTACCTTGCCCGAGAACAATGGAAGGCCAAAAACGGATGAAATAGTAACGTTCTTGACCACGGACAGCCTCTTACCGCAACTGCCTCCAAATCGGCCTATTGTGTTGTTTCCGTACAATAGCGGCCCTCATATATGCGGAGTGCGCATTGCTGAAAGAAGCTCTAGTACAGCTTTGATTCTTATAGAAAATCCATATAATCCAAAATTCAAGAAACAAGAGACAAAAAACTTAAGCTAA

Coding sequence (CDS)

ATGAGCTCCGGGATTAATACCGATCAAGCCGTTCGGGTTGTCGACATAGCATTGCTTTGTACCTTGCCCGAGAACAATGGAAGGCCAAAAACGGATGAAATAGTAACGTTCTTGACCACGGACAGCCTCTTACCGCAACTGCCTCCAAATCGGCCTATTGTGTTGTTTCCGTACAATAGCGGCCCTCATATATGCGGAGTGCGCATTGCTGAAAGAAGCTCTAGTACAGCTTTGATTCTTATAGAAAATCCATATAATCCAAAATTCAAGAAACAAGAGACAAAAAACTTAAGCTAA

Protein sequence

MSSGINTDQAVRVVDIALLCTLPENNGRPKTDEIVTFLTTDSLLPQLPPNRPIVLFPYNSGPHICGVRIAERSSSTALILIENPYNPKFKKQETKNLS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo13281Spo13281gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo13281.1Spo13281.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo13281.1.CDS.2Spo13281.1.CDS.2CDS
Spo13281.1.CDS.1Spo13281.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo13281.1.exon.2Spo13281.1.exon.2exon
Spo13281.1.exon.1Spo13281.1.exon.1exon


Homology
[Close]
BLAST of Spo13281.1 vs. NCBI nr
Match: gi|902160300|gb|KNA06417.1| (hypothetical protein SOVF_181320 [Spinacia oleracea])

HSP 1 Score: 134.4 bits (337), Expect = 1.100e-28
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 1 

		  

Query: 1   MSSGINTDQAVRVVDIALLCTLPENNGRPKTDEIVTFLTTDSLLPQLPPNRPIVLFPYNS 60
           M SGINTDQAVRVVDIALLCTLPENNGRPKTDEIVTFLTT SLLPQLPPNRPIVLFPYNS
Sbjct: 580 MGSGINTDQAVRVVDIALLCTLPENNGRPKTDEIVTFLTTVSLLPQLPPNRPIVLFPYNS 639

Query: 61  GPHICG 67
           GPH+CG
Sbjct: 640 GPHLCG 645
[Close]
BLAST of Spo13281.1 vs. NCBI nr
Match: gi|731321328|ref|XP_010671293.1| (PREDICTED: probable L-type lectin-domain containing receptor kinase S.7 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 118.2 bits (295), Expect = 7.900e-24
Identity = 52/66 (78.79%), Postives = 61/66 (92.42%), Query Frame = 1 

		  

Query: 1   MSSGINTDQAVRVVDIALLCTLPENNGRPKTDEIVTFLTTDSLLPQLPPNRPIVLFPYNS 60
           M S ++T+QA+RV+DIALLCTLPENNGRPK +EIVTFLT D +LP+LPPNRPIVLFPYNS
Sbjct: 618 MGSIVDTNQALRVIDIALLCTLPENNGRPKMEEIVTFLTMDCILPELPPNRPIVLFPYNS 677

Query: 61  GPHICG 67
           GPH+CG
Sbjct: 678 GPHLCG 683
[Close]
BLAST of Spo13281.1 vs. NCBI nr
Match: gi|914726373|gb|AKV93707.1| (clade XV lectin receptor kinase [Nicotiana benthamiana])

HSP 1 Score: 82.4 bits (202), Expect = 4.800e-13
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1 

		  

Query: 1   MSSGINTDQAVRVVDIALLCTLPENNGRPKTDEIVTFLTTDSLLPQLPPNRPIVLFPYNS 60
           M + +N +QA+RV+DI LLCTL EN GRP  +E+V FL  +  +P+LPP RP+ LFPYNS
Sbjct: 589 MGAVVNLEQAIRVLDIGLLCTLNENKGRPTIEEVVEFLNMEKPIPELPPGRPVCLFPYNS 648

Query: 61  GPHIC 66
              +C
Sbjct: 649 TTGLC 653
[Close]
BLAST of Spo13281.1 vs. NCBI nr
Match: gi|697175431|ref|XP_009596657.1| (PREDICTED: L-type lectin-domain containing receptor kinase VIII.1-like [Nicotiana tomentosiformis])

HSP 1 Score: 82.4 bits (202), Expect = 4.800e-13
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1 

		  

Query: 1   MSSGINTDQAVRVVDIALLCTLPENNGRPKTDEIVTFLTTDSLLPQLPPNRPIVLFPYNS 60
           M + +N +QA+RV+DI LLCTL EN GRP  +E+V FL  +  +P+LPP RP+ LFPYNS
Sbjct: 589 MGAVVNLEQAIRVLDIGLLCTLNENKGRPTMEEVVEFLNMEKPIPELPPGRPVCLFPYNS 648

Query: 61  GPHIC 66
              +C
Sbjct: 649 TTGLC 653
[Close]
BLAST of Spo13281.1 vs. NCBI nr
Match: gi|698476241|ref|XP_009785450.1| (PREDICTED: L-type lectin-domain containing receptor kinase VIII.2-like [Nicotiana sylvestris])

HSP 1 Score: 82.4 bits (202), Expect = 4.800e-13
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1 

		  

Query: 1   MSSGINTDQAVRVVDIALLCTLPENNGRPKTDEIVTFLTTDSLLPQLPPNRPIVLFPYNS 60
           M + +N +QA+RV+DI LLCTL EN GRP  +E+V FL  +  +P+LPP RP+ LFPYNS
Sbjct: 589 MGAVVNLEQAIRVLDIGLLCTLNENKGRPTMEEVVEFLNMEKPIPELPPGRPVCLFPYNS 648

Query: 61  GPHIC 66
              +C
Sbjct: 649 TTGLC 653
[Close]
BLAST of Spo13281.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QGQ7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_181320 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.400e-29
Identity = 63/66 (95.45%), Postives = 64/66 (96.97%), Query Frame = 1 

		  

Query: 1   MSSGINTDQAVRVVDIALLCTLPENNGRPKTDEIVTFLTTDSLLPQLPPNRPIVLFPYNS 60
           M SGINTDQAVRVVDIALLCTLPENNGRPKTDEIVTFLTT SLLPQLPPNRPIVLFPYNS
Sbjct: 580 MGSGINTDQAVRVVDIALLCTLPENNGRPKTDEIVTFLTTVSLLPQLPPNRPIVLFPYNS 639

Query: 61  GPHICG 67
           GPH+CG
Sbjct: 640 GPHLCG 645
[Close]
BLAST of Spo13281.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWW1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g050710 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.500e-24
Identity = 52/66 (78.79%), Postives = 61/66 (92.42%), Query Frame = 1 

		  

Query: 1   MSSGINTDQAVRVVDIALLCTLPENNGRPKTDEIVTFLTTDSLLPQLPPNRPIVLFPYNS 60
           M S ++T+QA+RV+DIALLCTLPENNGRPK +EIVTFLT D +LP+LPPNRPIVLFPYNS
Sbjct: 618 MGSIVDTNQALRVIDIALLCTLPENNGRPKMEEIVTFLTMDCILPELPPNRPIVLFPYNS 677

Query: 61  GPHICG 67
           GPH+CG
Sbjct: 678 GPHLCG 683
[Close]
BLAST of Spo13281.1 vs. UniProtKB/TrEMBL
Match: A0A0K1U1X2_NICBE (Clade XV lectin receptor kinase OS=Nicotiana benthamiana GN=LecRK PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.300e-13
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1 

		  

Query: 1   MSSGINTDQAVRVVDIALLCTLPENNGRPKTDEIVTFLTTDSLLPQLPPNRPIVLFPYNS 60
           M + +N +QA+RV+DI LLCTL EN GRP  +E+V FL  +  +P+LPP RP+ LFPYNS
Sbjct: 589 MGAVVNLEQAIRVLDIGLLCTLNENKGRPTIEEVVEFLNMEKPIPELPPGRPVCLFPYNS 648

Query: 61  GPHIC 66
              +C
Sbjct: 649 TTGLC 653
[Close]
BLAST of Spo13281.1 vs. UniProtKB/TrEMBL
Match: A0A0D2UZS4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G001800 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 9.700e-13
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 1 

		  

Query: 1   MSSGINTDQAVRVVDIALLCTLPENNGRPKTDEIVTFLTTDSLLPQLPPNRPIVLFPYNS 60
           M S +N +QA+R +DI LLCTL E+ GRPK +E+V FL+ D  +P+LP  RP+ LFPYNS
Sbjct: 617 MGSLVNLEQAIRALDIGLLCTLNESKGRPKMEEVVEFLSMDKQIPELPACRPVSLFPYNS 676

Query: 61  GPHIC 66
              +C
Sbjct: 677 ATSLC 681
[Close]
BLAST of Spo13281.1 vs. UniProtKB/TrEMBL
Match: A0A061G1N4_THECC (Concanavalin A-like lectin protein kinase family protein OS=Theobroma cacao GN=TCM_015541 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.300e-12
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 1 

		  

Query: 1   MSSGINTDQAVRVVDIALLCTLPENNGRPKTDEIVTFLTTDSLLPQLPPNRPIVLFPYNS 60
           M S +N +QA+RV+DI LLCTL E+ GRP  +E+V FL+ +  +P+LP +RP+ LFPYNS
Sbjct: 614 MGSLVNLEQAIRVLDIGLLCTLNESKGRPTVEEVVEFLSMERQIPELPASRPVALFPYNS 673

Query: 61  GPHIC 66
              +C
Sbjct: 674 ATGLC 678
The following BLAST results are available for this feature:
BLAST of Spo13281.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902160300|gb|KNA06417.1|1.1e-2895.4hypothetical protein SOVF_1813... [more]
gi|731321328|ref|XP_010671293.1|7.9e-2478.7PREDICTED: probable L-type lec... [more]
gi|914726373|gb|AKV93707.1|4.8e-1353.8clade XV lectin receptor kinas... [more]
gi|697175431|ref|XP_009596657.1|4.8e-1353.8PREDICTED: L-type lectin-domai... [more]
gi|698476241|ref|XP_009785450.1|4.8e-1353.8PREDICTED: L-type lectin-domai... [more]
back to top
BLAST of Spo13281.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QGQ7_SPIOL7.4e-2995.4Uncharacterized protein OS=Spi... [more]
A0A0J8CWW1_BETVU5.5e-2478.7Uncharacterized protein OS=Bet... [more]
A0A0K1U1X2_NICBE3.3e-1353.8Clade XV lectin receptor kinas... [more]
A0A0D2UZS4_GOSRA9.7e-1353.8Uncharacterized protein OS=Gos... [more]
A0A061G1N4_THECC1.3e-1252.3Concanavalin A-like lectin pro... [more]
back to top
BLAST of Spo13281.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo13281.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR27007FAMILY NOT NAMEDcoord: 1..92
score: 7.0
NoneNo IPR availablePANTHERPTHR27007:SF39SUBFAMILY NOT NAMEDcoord: 1..92
score: 7.0

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016310 phosphorylation
molecular_function GO:0005488 binding
molecular_function GO:0016301 kinase activity